clathrin assembly protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G14910 AT1G14910 AT2G01600 |
| fragaria_vesca | FvH4_4g34060 FvH4_4g34060 FvH4_4g34060 |
| malus_domestica | MD13G1021600.v1.1 |
| prunus_persica | Prupe.1G330300_v2.0.a1 Prupe.1G330300_v2.0.a1 Prupe.1G330300_v2.0.a1 |
| pyrus_communis | pycom13g02020 pycom16g02000 |
| rosa_chinensis | RchiOBHm_Chr4g0443561 |
| rosa_laevigata | RLG00000005915 |
| rosa_multiflora | Rmu_sc0001118.1_g000019 |
| rosa_roxburghii | Rroxscaffold_5G00384120 |
| rosa_rugosa | Rorug02G0169900 |
| rosa_samantha | Rh4AG403000 Rh4AG404900 Rh4BG415900 Rh4CG430400 Rh4DG410300 Rh4DG411500 |
| rosa_wichuraiana | Rw4G034760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 719, 783 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 13 |
| Acc36I | ACCTGC | 3 cut(s) | 514, 586, 1423 |
| AccB1I | GGYRCC | 3 cut(s) | 35, 928, 1574 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 399, 1266 |
| AccII | CGCG | 2 cut(s) | 89, 934 |
| AciI | CCGC | 7 cut(s) | 89, 197, 932, 934, 1493, 1550, 1634 |
| AclWI | GGATC | 3 cut(s) | 302, 1250, 1436 |
| AcoI | YGGCCR | 2 cut(s) | 617, 793 |
| AcsI | RAATTY | 3 cut(s) | 162, 334, 856 |
| AcuI | CTGAAG | 4 cut(s) | 301, 491, 695, 1026 |
| AcyI | GRCGYC | 3 cut(s) | 36, 929, 1575 |
| AfaI | GTAC | 6 cut(s) | 424, 672, 1209, 1297, 1437, 1615 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 399, 517, 1266, 1406 |
| AflIII | ACRYGT | 1 cut(s) | 70 |
| AgsI | TTSAA | 4 cut(s) | 455, 485, 1234, 1487 |
| AhlI | ACTAGT | 1 cut(s) | 1640 |
| AjiI | CACGTC | 3 cut(s) | 73, 127, 177 |
| AjnI | CCWGG | 4 cut(s) | 398, 413, 510, 1278 |
| AluBI | AGCT | 9 cut(s) | 364, 488, 592, 632, 684, 791, 1036, 1055, 1313 |
| AluI | AGCT | 9 cut(s) | 364, 488, 592, 632, 684, 791, 1036, 1055, 1313 |
| Alw26I | GTCTC | 5 cut(s) | 142, 223, 496, 815, 996 |
| AlwI | GGATC | 3 cut(s) | 302, 1250, 1436 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 592 |
| Ama87I | CYCGRG | 1 cut(s) | 540 |
| AoxI | GGCC | 3 cut(s) | 617, 793, 1663 |
| ApeKI | GCWGC | 5 cut(s) | 589, 629, 803, 1033, 1469 |
| ApoI | RAATTY | 3 cut(s) | 162, 334, 856 |
| AseI | ATTAAT | 1 cut(s) | 216 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 495 |
| AspLEI | GCGC | 6 cut(s) | 38, 517, 667, 701, 931, 1577 |
| AspS9I | GGNCC | 4 cut(s) | 568, 947, 1526, 1663 |
| AsuHPI | GGTGA | 3 cut(s) | 317, 1172, 1607 |
| AvaI | CYCGRG | 1 cut(s) | 540 |
| AvaII | GGWCC | 3 cut(s) | 568, 947, 1526 |
| AxyI | CCTNAGG | 1 cut(s) | 999 |
| BalI | TGGCCA | 1 cut(s) | 795 |
| BanI | GGYRCC | 3 cut(s) | 35, 928, 1574 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 978, 1010 |
| BbsI | GAAGAC | 1 cut(s) | 488 |
| BbvI | GCAGC | 5 cut(s) | 601, 641, 790, 1045, 1456 |
| BccI | CCATC | 6 cut(s) | 47, 704, 1066, 1219, 1260, 1564 |
| BceAI | ACGGC | 2 cut(s) | 49, 464 |
| BciT130I | CCWGG | 4 cut(s) | 400, 415, 512, 1280 |
| BciVI | GTATCC | 1 cut(s) | 521 |
| BcoDI | GTCTC | 5 cut(s) | 142, 223, 496, 815, 996 |
| BcuI | ACTAGT | 1 cut(s) | 1640 |
| BfaI | CTAG | 5 cut(s) | 852, 1017, 1052, 1199, 1641 |
| BfmI | CTRYAG | 3 cut(s) | 105, 1155, 1479 |
| BfoI | RGCGCY | 4 cut(s) | 39, 668, 932, 1578 |
| BfuAI | ACCTGC | 3 cut(s) | 514, 586, 1423 |
| BfuI | GTATCC | 1 cut(s) | 521 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 179 |
| BisI | GCNGC | 8 cut(s) | 590, 630, 804, 932, 1034, 1470, 1494, 1550 |
| BlsI | GCNGC | 8 cut(s) | 591, 631, 805, 933, 1035, 1471, 1495, 1551 |
| Bme1390I | CCNGG | 4 cut(s) | 400, 415, 512, 1280 |
| Bme18I | GGWCC | 3 cut(s) | 568, 947, 1526 |
| BmeT110I | CYCGRG | 1 cut(s) | 540 |
| BmgBI | CACGTC | 3 cut(s) | 73, 127, 177 |
| BmgT120I | GGNCC | 4 cut(s) | 568, 947, 1526, 1663 |
| BmiI | GGNNCC | 4 cut(s) | 37, 930, 949, 1576 |
| BmrFI | CCNGG | 4 cut(s) | 400, 415, 512, 1280 |
| BmrI | ACTGGG | 3 cut(s) | 1148, 1254, 1614 |
| BmsI | GCATC | 3 cut(s) | 735, 1153, 1175 |
| BmuI | ACTGGG | 3 cut(s) | 1148, 1254, 1614 |
| BoxI | GACNNNNGTC | 1 cut(s) | 387 |
| BpiI | GAAGAC | 1 cut(s) | 488 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 229, 261, 868, 900 |
| BpmI | CTGGAG | 2 cut(s) | 344, 370 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1029 |
| BpuEI | CTTGAG | 1 cut(s) | 895 |
| BsaBI | GATNNNNATC | 2 cut(s) | 281, 1254 |
| BsaHI | GRCGYC | 3 cut(s) | 36, 929, 1575 |
| BsaI | GGTCTC | 2 cut(s) | 496, 815 |
| BsaJI | CCNNGG | 6 cut(s) | 191, 399, 414, 510, 932, 1278 |
| BsaWI | WCCGGW | 1 cut(s) | 1127 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 342, 372, 618, 648, 1069, 1099 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 399, 517, 1266, 1406 |
| Bse118I | RCCGGY | 2 cut(s) | 615, 806 |
| Bse1I | ACTGG | 6 cut(s) | 387, 666, 862, 1143, 1260, 1609 |
| Bse21I | CCTNAGG | 1 cut(s) | 999 |
| Bse3DI | GCAATG | 4 cut(s) | 393, 959, 1192, 1503 |
| Bse8I | GATNNNNATC | 2 cut(s) | 281, 1254 |
| BseBI | CCWGG | 4 cut(s) | 400, 415, 512, 1280 |
| BseDI | CCNNGG | 6 cut(s) | 191, 399, 414, 510, 932, 1278 |
| BseGI | GGATG | 3 cut(s) | 103, 205, 1271 |
| BseJI | GATNNNNATC | 2 cut(s) | 281, 1254 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 399, 517, 1266, 1406 |
| BseMI | GCAATG | 4 cut(s) | 393, 959, 1192, 1503 |
| BseMII | CTCAG | 6 cut(s) | 169, 356, 945, 990, 1020, 1406 |
| BseNI | ACTGG | 6 cut(s) | 387, 666, 862, 1143, 1260, 1609 |
| BseRI | GAGGAG | 3 cut(s) | 1074, 1089, 1098 |
| BseXI | GCAGC | 5 cut(s) | 601, 641, 790, 1045, 1456 |
| BsgI | GTGCAG | 1 cut(s) | 1206 |
| Bsh1236I | CGCG | 2 cut(s) | 89, 934 |
| BshFI | GGCC | 3 cut(s) | 619, 795, 1665 |
| BshNI | GGYRCC | 3 cut(s) | 35, 928, 1574 |
| BsiHKCI | CYCGRG | 1 cut(s) | 540 |
| BsiSI | CCGG | 3 cut(s) | 616, 807, 1128 |
| BslFI | GGGAC | 3 cut(s) | 19, 375, 933 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 399, 517, 1266, 1406 |
| BsmAI | GTCTC | 5 cut(s) | 142, 223, 496, 815, 996 |
| BsmBI | CGTCTC | 1 cut(s) | 223 |
| BsmFI | GGGAC | 3 cut(s) | 19, 375, 933 |
| BsmI | GAATGC | 2 cut(s) | 354, 461 |
| BsnI | GGCC | 3 cut(s) | 619, 795, 1665 |
| Bso31I | GGTCTC | 2 cut(s) | 496, 815 |
| BsoBI | CYCGRG | 1 cut(s) | 540 |
| Bsp143I | GATC | 3 cut(s) | 307, 1255, 1441 |
| BspACI | CCGC | 7 cut(s) | 89, 197, 932, 934, 1493, 1550, 1634 |
| BspANI | GGCC | 3 cut(s) | 619, 795, 1665 |
| BspCNI | CTCAG | 6 cut(s) | 168, 355, 946, 991, 1021, 1405 |
| BspFNI | CGCG | 2 cut(s) | 89, 934 |
| BspHI | TCATGA | 1 cut(s) | 636 |
| BspLI | GGNNCC | 4 cut(s) | 37, 930, 949, 1576 |
| BspMAI | CTGCAG | 1 cut(s) | 1483 |
| BspMI | ACCTGC | 3 cut(s) | 514, 586, 1423 |
| BspPI | GGATC | 3 cut(s) | 302, 1250, 1436 |
| BspT107I | GGYRCC | 3 cut(s) | 35, 928, 1574 |
| BspTNI | GGTCTC | 2 cut(s) | 496, 815 |
| BsrDI | GCAATG | 4 cut(s) | 393, 959, 1192, 1503 |
| BsrFI | RCCGGY | 2 cut(s) | 615, 806 |
| BsrI | ACTGG | 6 cut(s) | 387, 666, 862, 1143, 1260, 1609 |
| BssAI | RCCGGY | 2 cut(s) | 615, 806 |
| BssECI | CCNNGG | 6 cut(s) | 191, 399, 414, 510, 932, 1278 |
| BssMI | GATC | 3 cut(s) | 307, 1255, 1441 |
| BssNI | GRCGYC | 3 cut(s) | 36, 929, 1575 |
| Bst2UI | CCWGG | 4 cut(s) | 400, 415, 512, 1280 |
| Bst4CI | ACNGT | 5 cut(s) | 259, 533, 654, 891, 1361 |
| Bst6I | CTCTTC | 1 cut(s) | 981 |
| BstACI | GRCGYC | 3 cut(s) | 36, 929, 1575 |
| BstC8I | GCNNGC | 5 cut(s) | 617, 789, 793, 936, 1667 |
| BstDEI | CTNAG | 6 cut(s) | 155, 342, 954, 999, 1029, 1392 |
| BstDSI | CCRYGG | 2 cut(s) | 191, 932 |
| BstF5I | GGATG | 3 cut(s) | 103, 205, 1271 |
| BstFNI | CGCG | 2 cut(s) | 89, 934 |
| BstH2I | RGCGCY | 4 cut(s) | 39, 668, 932, 1578 |
| BstHHI | GCGC | 6 cut(s) | 38, 517, 667, 701, 931, 1577 |
| BstKTI | GATC | 3 cut(s) | 310, 1258, 1444 |
| BstMAI | GTCTC | 5 cut(s) | 142, 223, 496, 815, 996 |
| BstMBI | GATC | 3 cut(s) | 307, 1255, 1441 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 35, 179, 203, 767, 935, 1478, 1499, 1555 |
| BstNI | CCWGG | 4 cut(s) | 400, 415, 512, 1280 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 387 |
| BstSCI | CCNGG | 4 cut(s) | 398, 413, 510, 1278 |
| BstSFI | CTRYAG | 3 cut(s) | 105, 1155, 1479 |
| BstUI | CGCG | 2 cut(s) | 89, 934 |
| BstV1I | GCAGC | 5 cut(s) | 601, 641, 790, 1045, 1456 |
| BstV2I | GAAGAC | 1 cut(s) | 488 |
| BstX2I | RGATCY | 1 cut(s) | 1441 |
| BstYI | RGATCY | 1 cut(s) | 1441 |
| Bsu36I | CCTNAGG | 1 cut(s) | 999 |
| BsuI | GTATCC | 1 cut(s) | 521 |
| BsuRI | GGCC | 3 cut(s) | 619, 795, 1665 |
| BtgI | CCRYGG | 2 cut(s) | 191, 932 |
| BtrI | CACGTC | 3 cut(s) | 73, 127, 177 |
| BtsCI | GGATG | 3 cut(s) | 103, 205, 1271 |
| BtsIMutI | CAGTG | 3 cut(s) | 659, 951, 1267 |
| BveI | ACCTGC | 3 cut(s) | 514, 586, 1423 |
| Cac8I | GCNNGC | 5 cut(s) | 617, 789, 793, 936, 1667 |
| CaiI | CAGNNNCTG | 1 cut(s) | 592 |
| CciI | TCATGA | 1 cut(s) | 636 |
| CfoI | GCGC | 6 cut(s) | 38, 517, 667, 701, 931, 1577 |
| Cfr10I | RCCGGY | 2 cut(s) | 615, 806 |
| Cfr13I | GGNCC | 4 cut(s) | 568, 947, 1526, 1663 |
| Cfr42I | CCGCGG | 1 cut(s) | 935 |
| CseI | GACGC | 2 cut(s) | 16, 360 |
| Csp6I | GTAC | 6 cut(s) | 423, 671, 1208, 1296, 1436, 1614 |
| CviAII | CATG | 3 cut(s) | 637, 755, 1120 |
| CviQI | GTAC | 6 cut(s) | 423, 671, 1208, 1296, 1436, 1614 |
| DdeI | CTNAG | 6 cut(s) | 155, 342, 954, 999, 1029, 1392 |
| DinI | GGCGCC | 3 cut(s) | 37, 930, 1576 |
| DpnI | GATC | 3 cut(s) | 309, 1257, 1443 |
| DpnII | GATC | 3 cut(s) | 307, 1255, 1441 |
| DraI | TTTAAA | 3 cut(s) | 267, 376, 688 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 13 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 13 |
| EaeI | YGGCCR | 2 cut(s) | 617, 793 |
| Eam1104I | CTCTTC | 1 cut(s) | 981 |
| EarI | CTCTTC | 1 cut(s) | 981 |
| EciI | GGCGGA | 1 cut(s) | 212 |
| Eco31I | GGTCTC | 2 cut(s) | 496, 815 |
| Eco47I | GGWCC | 3 cut(s) | 568, 947, 1526 |
| Eco57I | CTGAAG | 4 cut(s) | 301, 491, 695, 1026 |
| Eco81I | CCTNAGG | 1 cut(s) | 999 |
| Eco88I | CYCGRG | 1 cut(s) | 540 |
| EcoRII | CCWGG | 4 cut(s) | 398, 413, 510, 1278 |
| EcoT22I | ATGCAT | 2 cut(s) | 433, 1168 |
| EgeI | GGCGCC | 3 cut(s) | 37, 930, 1576 |
| EheI | GGCGCC | 3 cut(s) | 37, 930, 1576 |
| Esp3I | CGTCTC | 1 cut(s) | 223 |
| FaeI | CATG | 3 cut(s) | 640, 758, 1123 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 668, 700, 1174, 1206 |
| FaqI | GGGAC | 3 cut(s) | 19, 375, 933 |
| FatI | CATG | 3 cut(s) | 636, 754, 1119 |
| FauI | CCCGC | 1 cut(s) | 927 |
| FauNDI | CATATG | 1 cut(s) | 427 |
| Fnu4HI | GCNGC | 8 cut(s) | 590, 630, 804, 932, 1034, 1470, 1494, 1550 |
| FokI | GGATG | 3 cut(s) | 110, 212, 1278 |
| Fsp4HI | GCNGC | 8 cut(s) | 590, 630, 804, 932, 1034, 1470, 1494, 1550 |
| FspBI | CTAG | 5 cut(s) | 852, 1017, 1052, 1199, 1641 |
| GlaI | GCGC | 6 cut(s) | 37, 516, 666, 700, 930, 1576 |
| GluI | GCNGC | 8 cut(s) | 590, 630, 804, 932, 1034, 1470, 1494, 1550 |
| GsuI | CTGGAG | 2 cut(s) | 344, 370 |
| HaeII | RGCGCY | 4 cut(s) | 39, 668, 932, 1578 |
| HaeIII | GGCC | 3 cut(s) | 619, 795, 1665 |
| HapII | CCGG | 3 cut(s) | 616, 807, 1128 |
| HgaI | GACGC | 2 cut(s) | 16, 360 |
| HhaI | GCGC | 6 cut(s) | 38, 517, 667, 701, 931, 1577 |
| Hin1I | GRCGYC | 3 cut(s) | 36, 929, 1575 |
| Hin1II | CATG | 3 cut(s) | 640, 758, 1123 |
| Hin6I | GCGC | 6 cut(s) | 36, 515, 665, 699, 929, 1575 |
| HinP1I | GCGC | 6 cut(s) | 36, 515, 665, 699, 929, 1575 |
| HincII | GTYRAC | 1 cut(s) | 76 |
| HindII | GTYRAC | 1 cut(s) | 76 |
| HinfI | GANTC | 6 cut(s) | 63, 184, 244, 383, 989, 1343 |
| HpaII | CCGG | 3 cut(s) | 616, 807, 1128 |
| HphI | GGTGA | 3 cut(s) | 317, 1172, 1607 |
| Hpy166II | GTNNAC | 1 cut(s) | 76 |
| Hpy188III | TCNNGA | 4 cut(s) | 228, 542, 637, 874 |
| Hpy8I | GTNNAC | 1 cut(s) | 76 |
| Hpy99I | CGWCG | 3 cut(s) | 121, 131, 181 |
| HpyAV | CCTTC | 8 cut(s) | 325, 517, 617, 670, 904, 1050, 1367, 1660 |
| HpyCH4III | ACNGT | 5 cut(s) | 259, 533, 654, 891, 1361 |
| HpyCH4IV | ACGT | 4 cut(s) | 72, 126, 176, 493 |
| HpyCH4V | TGCA | 9 cut(s) | 213, 431, 659, 834, 1166, 1172, 1223, 1240, 1481 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 35, 179, 203, 767, 935, 1478, 1499, 1555 |
| HpyF3I | CTNAG | 6 cut(s) | 155, 342, 954, 999, 1029, 1392 |
| HpySE526I | ACGT | 4 cut(s) | 72, 126, 176, 493 |
| Hsp92I | GRCGYC | 3 cut(s) | 36, 929, 1575 |
| Hsp92II | CATG | 3 cut(s) | 640, 758, 1123 |
| HspAI | GCGC | 6 cut(s) | 36, 515, 665, 699, 929, 1575 |
| KasI | GGCGCC | 3 cut(s) | 35, 928, 1574 |
| KroI | GCCGGC | 1 cut(s) | 615 |
| KroNI | GCCGGC | 1 cut(s) | 617 |
| KspI | CCGCGG | 1 cut(s) | 935 |
| Kzo9I | GATC | 3 cut(s) | 307, 1255, 1441 |
| LmnI | GCTCC | 3 cut(s) | 626, 1111, 1423 |
| Lsp1109I | GCAGC | 5 cut(s) | 601, 641, 790, 1045, 1456 |
| LweI | GCATC | 3 cut(s) | 735, 1153, 1175 |
| MaeI | CTAG | 5 cut(s) | 852, 1017, 1052, 1199, 1641 |
| MaeII | ACGT | 4 cut(s) | 72, 126, 176, 493 |
| MaeIII | GTNAC | 2 cut(s) | 1115, 1643 |
| MalI | GATC | 3 cut(s) | 309, 1257, 1443 |
| MboI | GATC | 3 cut(s) | 307, 1255, 1441 |
| MboII | GAAGA | 5 cut(s) | 335, 488, 569, 923, 998 |
| MfeI | CAATTG | 3 cut(s) | 250, 1173, 1325 |
| MflI | RGATCY | 1 cut(s) | 1441 |
| MlsI | TGGCCA | 1 cut(s) | 795 |
| MluNI | TGGCCA | 1 cut(s) | 795 |
| Mly113I | GGCGCC | 3 cut(s) | 36, 929, 1575 |
| MlyI | GAGTC | 5 cut(s) | 57, 238, 377, 998, 1337 |
| MmeI | TCCRAC | 4 cut(s) | 40, 822, 1320, 1539 |
| Mox20I | TGGCCA | 1 cut(s) | 795 |
| Mph1103I | ATGCAT | 2 cut(s) | 433, 1168 |
| MroNI | GCCGGC | 1 cut(s) | 615 |
| MroXI | GAANNNNTTC | 1 cut(s) | 495 |
| MscI | TGGCCA | 1 cut(s) | 795 |
| MseI | TTAA | 5 cut(s) | 216, 266, 375, 687, 765 |
| Msp20I | TGGCCA | 1 cut(s) | 795 |
| MspA1I | CMGCKG | 3 cut(s) | 592, 632, 934 |
| MspI | CCGG | 3 cut(s) | 616, 807, 1128 |
| MspR9I | CCNGG | 4 cut(s) | 400, 415, 512, 1280 |
| MunI | CAATTG | 3 cut(s) | 250, 1173, 1325 |
| Mva1269I | GAATGC | 2 cut(s) | 354, 461 |
| MvaI | CCWGG | 4 cut(s) | 400, 415, 512, 1280 |
| MvnI | CGCG | 2 cut(s) | 89, 934 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 35, 179, 203, 767, 935, 1478, 1499, 1555 |
| NaeI | GCCGGC | 1 cut(s) | 617 |
| NarI | GGCGCC | 3 cut(s) | 36, 929, 1575 |
| NdeI | CATATG | 1 cut(s) | 427 |
| NdeII | GATC | 3 cut(s) | 307, 1255, 1441 |
| NgoMIV | GCCGGC | 1 cut(s) | 615 |
| NlaIII | CATG | 3 cut(s) | 640, 758, 1123 |
| NlaIV | GGNNCC | 4 cut(s) | 37, 930, 949, 1576 |
| NsiI | ATGCAT | 2 cut(s) | 433, 1168 |
| PaeR7I | CTCGAG | 1 cut(s) | 540 |
| PagI | TCATGA | 1 cut(s) | 636 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 14, 78 |
| PctI | GAATGC | 2 cut(s) | 354, 461 |
| PdiI | GCCGGC | 1 cut(s) | 617 |
| PdmI | GAANNNNTTC | 1 cut(s) | 495 |
| PfeI | GAWTC | 1 cut(s) | 184 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 399, 1266 |
| PkrI | GCNGC | 8 cut(s) | 591, 631, 805, 933, 1035, 1471, 1495, 1551 |
| PleI | GAGTC | 5 cut(s) | 57, 238, 377, 997, 1337 |
| PluTI | GGCGCC | 3 cut(s) | 39, 932, 1578 |
| PpsI | GAGTC | 5 cut(s) | 57, 238, 377, 997, 1337 |
| PshAI | GACNNNNGTC | 1 cut(s) | 387 |
| PshBI | ATTAAT | 1 cut(s) | 216 |
| PsiI | TTATAA | 2 cut(s) | 719, 783 |
| Psp6I | CCWGG | 4 cut(s) | 398, 413, 510, 1278 |
| PspGI | CCWGG | 4 cut(s) | 398, 413, 510, 1278 |
| PspN4I | GGNNCC | 4 cut(s) | 37, 930, 949, 1576 |
| PspPI | GGNCC | 4 cut(s) | 568, 947, 1526, 1663 |
| PstI | CTGCAG | 1 cut(s) | 1483 |
| PstNI | CAGNNNCTG | 1 cut(s) | 592 |
| PsuI | RGATCY | 1 cut(s) | 1441 |
| PvuII | CAGCTG | 2 cut(s) | 592, 632 |
| RsaI | GTAC | 6 cut(s) | 424, 672, 1209, 1297, 1437, 1615 |
| RsaNI | GTAC | 6 cut(s) | 423, 671, 1208, 1296, 1436, 1614 |
| SacII | CCGCGG | 1 cut(s) | 935 |
| SaqAI | TTAA | 5 cut(s) | 216, 266, 375, 687, 765 |
| SatI | GCNGC | 8 cut(s) | 590, 630, 804, 932, 1034, 1470, 1494, 1550 |
| Sau3AI | GATC | 3 cut(s) | 307, 1255, 1441 |
| Sau96I | GGNCC | 4 cut(s) | 568, 947, 1526, 1663 |
| SchI | GAGTC | 5 cut(s) | 57, 238, 377, 998, 1337 |
| ScrFI | CCNGG | 4 cut(s) | 400, 415, 512, 1280 |
| SfaNI | GCATC | 3 cut(s) | 735, 1153, 1175 |
| SfcI | CTRYAG | 3 cut(s) | 105, 1155, 1479 |
| SfoI | GGCGCC | 3 cut(s) | 37, 930, 1576 |
| Sfr274I | CTCGAG | 1 cut(s) | 540 |
| Sfr303I | CCGCGG | 1 cut(s) | 935 |
| SgrBI | CCGCGG | 1 cut(s) | 935 |
| SinI | GGWCC | 3 cut(s) | 568, 947, 1526 |
| SlaI | CTCGAG | 1 cut(s) | 540 |
| SmlI | CTYRAG | 2 cut(s) | 540, 874 |
| SmoI | CTYRAG | 2 cut(s) | 540, 874 |
| SpeI | ACTAGT | 1 cut(s) | 1640 |
| SsiI | CCGC | 7 cut(s) | 89, 197, 932, 934, 1493, 1550, 1634 |
| SspDI | GGCGCC | 3 cut(s) | 35, 928, 1574 |
| SspMI | CTAG | 5 cut(s) | 852, 1017, 1052, 1199, 1641 |
| StyD4I | CCNGG | 4 cut(s) | 398, 413, 510, 1278 |
| TaaI | ACNGT | 5 cut(s) | 259, 533, 654, 891, 1361 |
| TaiI | ACGT | 4 cut(s) | 75, 129, 179, 496 |
| TaqI | TCGA | 7 cut(s) | 129, 187, 227, 541, 1244, 1284, 1431 |
| TauI | GCSGC | 3 cut(s) | 934, 1496, 1552 |
| TfiI | GAWTC | 1 cut(s) | 184 |
| Tru1I | TTAA | 5 cut(s) | 216, 266, 375, 687, 765 |
| Tru9I | TTAA | 5 cut(s) | 216, 266, 375, 687, 765 |
| TscAI | CASTG | 3 cut(s) | 666, 958, 1267 |
| TseI | GCWGC | 5 cut(s) | 589, 629, 803, 1033, 1469 |
| TspDTI | ATGAA | 6 cut(s) | 653, 771, 840, 1038, 1047, 1386 |
| TspGWI | ACGGA | 1 cut(s) | 1434 |
| TspRI | CASTG | 3 cut(s) | 666, 958, 1267 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 399, 1266 |
| VpaK11BI | GGWCC | 3 cut(s) | 568, 947, 1526 |
| VspI | ATTAAT | 1 cut(s) | 216 |
| XapI | RAATTY | 3 cut(s) | 162, 334, 856 |
| XhoI | CTCGAG | 1 cut(s) | 540 |
| XmnI | GAANNNNTTC | 1 cut(s) | 495 |
| XspI | CTAG | 5 cut(s) | 852, 1017, 1052, 1199, 1641 |
| Zsp2I | ATGCAT | 2 cut(s) | 433, 1168 |