Rh4DG411500

clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0008006
Physical Location & Seq
Reverse (-)
62307401 .. 62312172
4772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG411500.1

Sequence Viewer

Length: 1272 bp
ATGGGGACGCTTCAGTCGTGGAGAAAAGCCTACGGCGCCCTCAAGGACACCACCAAAGTCGGACTCGCCCACGTCAACAGCGATTACGCCGATTTGGATGTTGCTATAGTGAAGGCGACGAACCACGTCGAGTGTCCTCCCAAGGAGAGACACCTCAGAAAAATTCTGTTTGCCACGTCGGCGATTCGTCCCCGGGCAGATGTTGCTTATTGCATTCATGCTCTTTCGAGACGATTGAACAAGACTCACAATTGGACGGTGGCTTTAAAAACGCTGATAGTTATTCATAGGACTTTGAGGGAGGGTGATCCTACCTTCAGAGAAGAACTTGTAAATTTCTCTCAGAGAGGACGTATTCTCCAGCTTTCTAATTTTAAAGACGACTCCAGTCCCATTGCTTGGGATTGCTCTGCCTGGGTGCGTACATACGCATTGTTTTTAGAGGAACGACTTGAATGCTTTAGGGTTCTGAAGTATGACATTGAAGCTGAACGTCTTCCAAGACCTGCCCAGGCGCAGGAGAAGGGATACAGTAGAACTCGAGAATTGGATAGTGAAGAACTGTTGGACCACTTGCCTGCTTTACAGCAGCTGTTGTATCGCCTCATTGGTTGCCGGCCAGAAGGAGCAGCTGTCATGAATTATGTTATACAGTACGCACTGGCGCTGGTACTGAAAGAGAGCTTTAAAATATATTGTGCTGTCAATGATGGAATTATAAATCTTATTGATAAGTTTTTTGAGATGCCAAGACATGAAGCGGTTAAAGCCCTTGATGTTTATAAGCGAGCTGGCCAACAGGCTGCCGGTCTCTCTGATTTTTATGAAATTTGCAAAGGGTTGGAACTTGCTAGGAATTTCCAGTTTCCTGTCTTGAGAGAGCCTCCTCAGTCCTTCCTTACAACAATGGAAGAATATATAAGAGAAGCACCACGGGCTGTTAATGTTCCAACTGAGCCATTGCTTCTTTTGACATATAGACCAGAGGAGCCTCTACCTGAAGACACAAACTTATCTAGTGATGAACCTGAGCAGCTACCTTCAGACTTTCTAGCACAATCTGATGTTGAGACTGCGACTCCACCAACACCACCTCCTCCTCCTGCTCCTCAAAGTAACCTGGCTACTGGAGATTTACTGGGATTGGACTTTGCTACAGGTGATGCATCTGCCATTGAGGAAAGCAATGCTTTGGCTCTAGCCATAGTACCATCTGAAACTGGTAATCATTTTTTTTCTTATTTGTTTATTTTGTCTTCACTTGTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

423

Amino Acids

47.66

Weight (kDa)

5.44

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 31 - 309 1.7e-95 ANTH domain
ENTH PF01417 31 - 127 8.3e-06 ENTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 719, 783
AasI GACNNNNNNGTC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 514
AccB1I GGYRCC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 399
AciI CCGC 1 cut(s) 761
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 2 cut(s) 617, 793
AcsI RAATTY 4 cut(s) 162, 334, 828, 856
AcuI CTGAAG 4 cut(s) 301, 491, 1020, 1026
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 4 cut(s) 424, 656, 672, 1209
AfiI CCNNNNNNNGG 2 cut(s) 399, 517
AgsI TTSAA 3 cut(s) 238, 455, 485
AjiI CACGTC 3 cut(s) 73, 127, 177
AjnI CCWGG 3 cut(s) 413, 510, 1119
AluBI AGCT 7 cut(s) 364, 488, 592, 632, 684, 791, 1036
AluI AGCT 7 cut(s) 364, 488, 592, 632, 684, 791, 1036
Alw26I GTCTC 4 cut(s) 142, 223, 815, 1064
AlwI GGATC 1 cut(s) 302
AlwNI CAGNNNCTG 1 cut(s) 592
Ama87I CYCGRG 2 cut(s) 192, 540
AoxI GGCC 2 cut(s) 617, 793
ApeKI GCWGC 4 cut(s) 589, 629, 803, 1033
ApoI RAATTY 4 cut(s) 162, 334, 828, 856
Asp700I GAANNNNTTC 1 cut(s) 495
AspLEI GCGC 3 cut(s) 38, 517, 667
AspS9I GGNCC 1 cut(s) 568
AsuC2I CCSGG 2 cut(s) 193, 194
AsuHPI GGTGA 2 cut(s) 317, 1172
AvaI CYCGRG 2 cut(s) 192, 540
AvaII GGWCC 1 cut(s) 568
BalI TGGCCA 1 cut(s) 795
BanI GGYRCC 1 cut(s) 35
BbsI GAAGAC 3 cut(s) 488, 1008, 1248
BbvI GCAGC 4 cut(s) 601, 641, 790, 1045
BccI CCATC 2 cut(s) 704, 1219
BceAI ACGGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 438, 472
BciT130I CCWGG 3 cut(s) 415, 512, 1121
BciVI GTATCC 1 cut(s) 521
BcnI CCSGG 2 cut(s) 193, 194
BcoDI GTCTC 4 cut(s) 142, 223, 815, 1064
BfaI CTAG 4 cut(s) 852, 1017, 1052, 1199
BfmI CTRYAG 2 cut(s) 105, 1155
BfoI RGCGCY 2 cut(s) 39, 668
BfuAI ACCTGC 1 cut(s) 514
BfuI GTATCC 1 cut(s) 521
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 4 cut(s) 590, 630, 804, 1034
BlsI GCNGC 4 cut(s) 591, 631, 805, 1035
Bme1390I CCNGG 5 cut(s) 193, 194, 415, 512, 1121
Bme18I GGWCC 1 cut(s) 568
BmeT110I CYCGRG 2 cut(s) 192, 540
BmgBI CACGTC 3 cut(s) 73, 127, 177
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 2 cut(s) 37, 990
BmrFI CCNGG 5 cut(s) 193, 194, 415, 512, 1121
BmrI ACTGGG 1 cut(s) 1148
BmsI GCATC 3 cut(s) 735, 1153, 1175
BmuI ACTGGG 1 cut(s) 1148
BoxI GACNNNNGTC 1 cut(s) 387
BpiI GAAGAC 3 cut(s) 488, 1008, 1248
BplI GAGNNNNNCTC 2 cut(s) 868, 900
BpmI CTGGAG 3 cut(s) 344, 370, 1149
Bpu10I CCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 2 cut(s) 26, 895
BpuMI CCSGG 2 cut(s) 193, 194
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 815
BsaJI CCNNGG 6 cut(s) 141, 191, 192, 414, 510, 932
BsaXI ACNNNNNCTCC 8 cut(s) 342, 372, 618, 648, 1063, 1078, 1093, 1108
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 517
Bse118I RCCGGY 2 cut(s) 615, 806
Bse1I ACTGG 6 cut(s) 387, 666, 862, 1132, 1143, 1225
Bse3DI GCAATG 3 cut(s) 393, 959, 1192
BseBI CCWGG 3 cut(s) 415, 512, 1121
BseDI CCNNGG 6 cut(s) 141, 191, 192, 414, 510, 932
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 399, 517
BseMI GCAATG 3 cut(s) 393, 959, 1192
BseMII CTCAG 5 cut(s) 169, 356, 902, 945, 1020
BseNI ACTGG 6 cut(s) 387, 666, 862, 1132, 1143, 1225
BseRI GAGGAG 5 cut(s) 876, 1001, 1086, 1089, 1098
BseXI GCAGC 4 cut(s) 601, 641, 790, 1045
BshFI GGCC 2 cut(s) 619, 795
BshNI GGYRCC 1 cut(s) 35
BsiHKCI CYCGRG 2 cut(s) 192, 540
BsiSI CCGG 3 cut(s) 193, 616, 807
BslFI GGGAC 3 cut(s) 19, 174, 375
BslI CCNNNNNNNGG 2 cut(s) 399, 517
BsmAI GTCTC 4 cut(s) 142, 223, 815, 1064
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 3 cut(s) 19, 174, 375
BsmI GAATGC 2 cut(s) 213, 461
BsnI GGCC 2 cut(s) 619, 795
Bso31I GGTCTC 1 cut(s) 815
BsoBI CYCGRG 2 cut(s) 192, 540
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 1 cut(s) 761
BspANI GGCC 2 cut(s) 619, 795
BspCNI CTCAG 5 cut(s) 168, 355, 901, 946, 1021
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 2 cut(s) 37, 990
BspMI ACCTGC 1 cut(s) 514
BspPI GGATC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 815
BsrDI GCAATG 3 cut(s) 393, 959, 1192
BsrFI RCCGGY 2 cut(s) 615, 806
BsrI ACTGG 6 cut(s) 387, 666, 862, 1132, 1143, 1225
BssAI RCCGGY 2 cut(s) 615, 806
BssECI CCNNGG 6 cut(s) 141, 191, 192, 414, 510, 932
BssMI GATC 1 cut(s) 307
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 3 cut(s) 415, 512, 1121
Bst4CI ACNGT 4 cut(s) 259, 533, 564, 654
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 203
BstC8I GCNNGC 4 cut(s) 579, 617, 789, 793
BstDEI CTNAG 5 cut(s) 155, 342, 888, 954, 1029
BstDSI CCRYGG 1 cut(s) 932
BstF5I GGATG 1 cut(s) 103
BstH2I RGCGCY 2 cut(s) 39, 668
BstHHI GCGC 3 cut(s) 38, 517, 667
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 4 cut(s) 142, 223, 815, 1064
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 5 cut(s) 35, 179, 203, 767, 935
BstNI CCWGG 3 cut(s) 415, 512, 1121
BstPAI GACNNNNGTC 1 cut(s) 387
BstSCI CCNGG 5 cut(s) 191, 192, 413, 510, 1119
BstSFI CTRYAG 2 cut(s) 105, 1155
BstV1I GCAGC 4 cut(s) 601, 641, 790, 1045
BstV2I GAAGAC 3 cut(s) 488, 1008, 1248
BsuI GTATCC 1 cut(s) 521
BsuRI GGCC 2 cut(s) 619, 795
BtgI CCRYGG 1 cut(s) 932
BtrI CACGTC 3 cut(s) 73, 127, 177
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 659
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 4 cut(s) 579, 617, 789, 793
CaiI CAGNNNCTG 1 cut(s) 592
CciI TCATGA 1 cut(s) 636
CfoI GCGC 3 cut(s) 38, 517, 667
Cfr10I RCCGGY 2 cut(s) 615, 806
Cfr13I GGNCC 1 cut(s) 568
Cfr9I CCCGGG 1 cut(s) 192
CseI GACGC 1 cut(s) 16
Csp6I GTAC 4 cut(s) 423, 655, 671, 1208
CviAII CATG 3 cut(s) 218, 637, 755
CviQI GTAC 4 cut(s) 423, 655, 671, 1208
DdeI CTNAG 5 cut(s) 155, 342, 888, 954, 1029
DinI GGCGCC 1 cut(s) 37
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DraI TTTAAA 3 cut(s) 267, 376, 688
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 2 cut(s) 617, 793
Eco130I CCWWGG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 815
Eco47I GGWCC 1 cut(s) 568
Eco57I CTGAAG 4 cut(s) 301, 491, 1020, 1026
Eco88I CYCGRG 2 cut(s) 192, 540
EcoRII CCWGG 3 cut(s) 413, 510, 1119
EcoT14I CCWWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 1168
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 3 cut(s) 221, 640, 758
FalI AAGNNNNNCTT 2 cut(s) 1174, 1206
FaqI GGGAC 3 cut(s) 19, 174, 375
FatI CATG 3 cut(s) 217, 636, 754
Fnu4HI GCNGC 4 cut(s) 590, 630, 804, 1034
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 4 cut(s) 590, 630, 804, 1034
FspBI CTAG 4 cut(s) 852, 1017, 1052, 1199
GlaI GCGC 3 cut(s) 37, 516, 666
GluI GCNGC 4 cut(s) 590, 630, 804, 1034
GsuI CTGGAG 3 cut(s) 344, 370, 1149
HaeII RGCGCY 2 cut(s) 39, 668
HaeIII GGCC 2 cut(s) 619, 795
HapII CCGG 3 cut(s) 193, 616, 807
HgaI GACGC 1 cut(s) 16
HhaI GCGC 3 cut(s) 38, 517, 667
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 3 cut(s) 221, 640, 758
Hin6I GCGC 3 cut(s) 36, 515, 665
HinP1I GCGC 3 cut(s) 36, 515, 665
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 5 cut(s) 63, 184, 244, 383, 1078
HpaII CCGG 3 cut(s) 193, 616, 807
HphI GGTGA 2 cut(s) 317, 1172
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 9 cut(s) 62, 158, 320, 345, 471, 817, 1045, 1063, 1216
Hpy188III TCNNGA 4 cut(s) 228, 542, 637, 874
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 3 cut(s) 121, 131, 181
HpyAV CCTTC 6 cut(s) 106, 325, 517, 617, 904, 1050
HpyCH4III ACNGT 4 cut(s) 259, 533, 564, 654
HpyCH4IV ACGT 5 cut(s) 72, 126, 176, 352, 493
HpyCH4V TGCA 3 cut(s) 213, 834, 1166
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 179, 203, 767, 935
HpyF3I CTNAG 5 cut(s) 155, 342, 888, 954, 1029
HpySE526I ACGT 5 cut(s) 72, 126, 176, 352, 493
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 3 cut(s) 221, 640, 758
HspAI GCGC 3 cut(s) 36, 515, 665
KasI GGCGCC 1 cut(s) 35
KroI GCCGGC 1 cut(s) 615
KroNI GCCGGC 1 cut(s) 617
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 3 cut(s) 626, 988, 1111
Lsp1109I GCAGC 4 cut(s) 601, 641, 790, 1045
LweI GCATC 3 cut(s) 735, 1153, 1175
MaeI CTAG 4 cut(s) 852, 1017, 1052, 1199
MaeII ACGT 5 cut(s) 72, 126, 176, 352, 493
MaeIII GTNAC 1 cut(s) 1115
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 6 cut(s) 335, 488, 569, 923, 1013, 1248
MfeI CAATTG 1 cut(s) 250
MlsI TGGCCA 1 cut(s) 795
MluCI AATT 9 cut(s) 162, 250, 334, 370, 545, 640, 714, 828, 856
MluNI TGGCCA 1 cut(s) 795
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 4 cut(s) 57, 238, 377, 1072
MmeI TCCRAC 4 cut(s) 40, 546, 822, 974
Mox20I TGGCCA 1 cut(s) 795
Mph1103I ATGCAT 1 cut(s) 1168
MroNI GCCGGC 1 cut(s) 615
MroXI GAANNNNTTC 1 cut(s) 495
MscI TGGCCA 1 cut(s) 795
MseI TTAA 5 cut(s) 266, 375, 687, 765, 942
Msp20I TGGCCA 1 cut(s) 795
MspA1I CMGCKG 2 cut(s) 592, 632
MspI CCGG 3 cut(s) 193, 616, 807
MspR9I CCNGG 5 cut(s) 193, 194, 415, 512, 1121
MunI CAATTG 1 cut(s) 250
Mva1269I GAATGC 2 cut(s) 213, 461
MvaI CCWGG 3 cut(s) 415, 512, 1121
MwoI GCNNNNNNNGC 5 cut(s) 35, 179, 203, 767, 935
NaeI GCCGGC 1 cut(s) 617
NarI GGCGCC 1 cut(s) 36
NciI CCSGG 2 cut(s) 193, 194
NdeII GATC 1 cut(s) 307
NgoMIV GCCGGC 1 cut(s) 615
NlaIII CATG 3 cut(s) 221, 640, 758
NlaIV GGNNCC 2 cut(s) 37, 990
NsiI ATGCAT 1 cut(s) 1168
PaeR7I CTCGAG 1 cut(s) 540
PagI TCATGA 1 cut(s) 636
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 78
PctI GAATGC 2 cut(s) 213, 461
PdiI GCCGGC 1 cut(s) 617
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 1 cut(s) 184
PflMI CCANNNNNTGG 1 cut(s) 399
PkrI GCNGC 4 cut(s) 591, 631, 805, 1035
PleI GAGTC 4 cut(s) 57, 238, 377, 1072
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 4 cut(s) 57, 238, 377, 1072
PshAI GACNNNNGTC 1 cut(s) 387
PsiI TTATAA 2 cut(s) 719, 783
Psp6I CCWGG 3 cut(s) 413, 510, 1119
PspGI CCWGG 3 cut(s) 413, 510, 1119
PspN4I GGNNCC 2 cut(s) 37, 990
PspPI GGNCC 1 cut(s) 568
PstNI CAGNNNCTG 1 cut(s) 592
PvuII CAGCTG 2 cut(s) 592, 632
RsaI GTAC 4 cut(s) 424, 656, 672, 1209
RsaNI GTAC 4 cut(s) 423, 655, 671, 1208
SaqAI TTAA 5 cut(s) 266, 375, 687, 765, 942
SatI GCNGC 4 cut(s) 590, 630, 804, 1034
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 568
SchI GAGTC 4 cut(s) 57, 238, 377, 1072
ScrFI CCNGG 5 cut(s) 193, 194, 415, 512, 1121
SfaNI GCATC 3 cut(s) 735, 1153, 1175
SfcI CTRYAG 2 cut(s) 105, 1155
SfoI GGCGCC 1 cut(s) 37
Sfr274I CTCGAG 1 cut(s) 540
SinI GGWCC 1 cut(s) 568
SlaI CTCGAG 1 cut(s) 540
SmaI CCCGGG 1 cut(s) 194
SmlI CTYRAG 3 cut(s) 41, 540, 874
SmoI CTYRAG 3 cut(s) 41, 540, 874
Sse9I AATT 9 cut(s) 162, 250, 334, 370, 545, 640, 714, 828, 856
SsiI CCGC 1 cut(s) 761
SspDI GGCGCC 1 cut(s) 35
SspMI CTAG 4 cut(s) 852, 1017, 1052, 1199
StyD4I CCNGG 5 cut(s) 191, 192, 413, 510, 1119
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 4 cut(s) 259, 533, 564, 654
TaiI ACGT 5 cut(s) 75, 129, 179, 355, 496
TaqI TCGA 3 cut(s) 129, 227, 541
TasI AATT 9 cut(s) 162, 250, 334, 370, 545, 640, 714, 828, 856
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 5 cut(s) 266, 375, 687, 765, 942
Tru9I TTAA 5 cut(s) 266, 375, 687, 765, 942
TscAI CASTG 1 cut(s) 666
TseI GCWGC 4 cut(s) 589, 629, 803, 1033
TspDTI ATGAA 6 cut(s) 206, 275, 653, 771, 840, 1038
TspMI CCCGGG 1 cut(s) 192
TspRI CASTG 1 cut(s) 666
Van91I CCANNNNNTGG 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 4 cut(s) 162, 334, 828, 856
XhoI CTCGAG 1 cut(s) 540
XmaI CCCGGG 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 4 cut(s) 852, 1017, 1052, 1199
Zsp2I ATGCAT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.