FvH4_5g00110

14 kDa proline-rich protein DC2.15-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
66843 .. 67783
941 bp
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UTR
Exon/CDS
Intron
FvH4_5g00110.t1

Sequence Viewer

Length: 417 bp
ATGGCCTCCAAGGCTACTACCACTGCTTTTTTCCTCTCCCTCAATCTCCTCTTCTTCACTTTGGTCACTTCCACAAGCACTCCTTGCCCACCACCGCCTAAGAAGCACCACCACCACCACCCAAAGAACGTGAGCCCCGCACCACCCAAGCCCTCTAAGGCCGTGTGCCCCAAGGACACCTTGAAGTTGGGAGCTTGTGCCGACGTGTTGAACGGCTTGGTGCACCTTGTGGTTGGTCCACCAAAGTTCCCTTGCTGCAGCCTCATTCAGGGTCTCGTTGATCTTGACGCCGCTGTGTGCCTTTGCACTGCTATTAAGGCTAATGTTCTGGGCATCAACCTTAACGTCCCCGTCTCGTTGAGCTTGCTCTTGAACTACTGTGGCAAGAAGGTTCCATCTGGTTATGAATGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

14.5

Weight (kDa)

9.03

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 47 - 137 9.8e-08 Probable lipid transfer
Hydrophob_seed PF14547 55 - 138 1.1e-25 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 56 - 137 3.3e-17 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45180
fragaria_vesca FvH4_5g00110
prunus_persica Prupe.5G072800_v2.0.a1
pyrus_communis pycom06g06270
rosa_chinensis RchiOBHm_Chr7g0202821
rosa_laevigata RLG00000003569
rosa_multiflora Rmu_sc0011770.1_g000001
rosa_rugosa Rorug07G0073300
rosa_samantha Rh7AG201100 Rh7BG201300 Rh7CG212500 Rh7DG208000
rosa_wichuraiana Rw7G017590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 95, 138, 291
AcyI GRCGYC 1 cut(s) 288
AdeI CACNNNGTG 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 268
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 3 cut(s) 184, 211, 373
AjiI CACGTC 1 cut(s) 205
AluBI AGCT 2 cut(s) 194, 363
AluI AGCT 2 cut(s) 194, 363
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 2 cut(s) 278, 358
Alw44I GTGCAC 1 cut(s) 221
AoxI GGCC 2 cut(s) 3, 159
ApaLI GTGCAC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 255, 258
AspS9I GGNCC 1 cut(s) 236
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 2 cut(s) 170, 225
BanII GRGCYC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 242, 270
BccI CCATC 1 cut(s) 403
BceAI ACGGC 2 cut(s) 146, 229
BcoDI GTCTC 2 cut(s) 278, 358
BfmI CTRYAG 1 cut(s) 256
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 3 cut(s) 256, 259, 291
BlsI GCNGC 3 cut(s) 257, 260, 292
Bme18I GGWCC 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 393
BmsI GCATC 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 9, 171
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 9, 171
BseLI CCNNNNNNNGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 2 cut(s) 170, 225
BseXI GCAGC 2 cut(s) 242, 270
BshFI GGCC 2 cut(s) 5, 161
BsiHKAI GWGCWC 1 cut(s) 225
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 278, 358
BsmBI CGTCTC 1 cut(s) 358
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 2 cut(s) 5, 161
Bso31I GGTCTC 1 cut(s) 278
Bsp1286I GDGCHC 3 cut(s) 137, 170, 225
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 3 cut(s) 95, 138, 291
BspANI GGCC 2 cut(s) 5, 161
BspLI GGNNCC 1 cut(s) 393
BspMAI CTGCAG 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 9, 171
BssMI GATC 1 cut(s) 280
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 9, 171
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 2 cut(s) 99, 156
BstENI CCTNNNNNAGG 1 cut(s) 266
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 2 cut(s) 278, 358
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 4 cut(s) 11, 84, 103, 317
BstSFI CTRYAG 1 cut(s) 256
BstSLI GKGCMC 2 cut(s) 170, 225
BstV1I GCAGC 2 cut(s) 242, 270
BsuRI GGCC 2 cut(s) 5, 161
BtrI CACGTC 1 cut(s) 205
BtsI GCAGTG 2 cut(s) 21, 306
BtsIMutI CAGTG 2 cut(s) 21, 306
Cac8I GCNNGC 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 236
CseI GACGC 1 cut(s) 296
DdeI CTNAG 2 cut(s) 99, 156
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
DraIII CACNNNGTG 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco130I CCWWGG 2 cut(s) 9, 171
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 266
EcoT14I CCWWGG 2 cut(s) 9, 171
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 2 cut(s) 9, 171
Esp3I CGTCTC 1 cut(s) 358
FaiI YATR 1 cut(s) 405
FalI AAGNNNNNCTT 4 cut(s) 67, 99, 164, 196
FaqI GGGAC 1 cut(s) 332
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 256, 259, 291
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 256, 259, 291
GluI GCNGC 3 cut(s) 256, 259, 291
HaeIII GGCC 2 cut(s) 5, 161
HgaI GACGC 1 cut(s) 296
Hin1I GRCGYC 1 cut(s) 288
Hpy166II GTNNAC 2 cut(s) 223, 239
Hpy188III TCNNGA 2 cut(s) 284, 370
Hpy8I GTNNAC 2 cut(s) 223, 239
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 3 cut(s) 129, 204, 345
HpyCH4V TGCA 3 cut(s) 223, 258, 306
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 84, 103, 317
HpyF3I CTNAG 2 cut(s) 99, 156
HpySE526I ACGT 3 cut(s) 129, 204, 345
Hsp92I GRCGYC 1 cut(s) 288
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 3 cut(s) 254, 314, 384
Lsp1109I GCAGC 2 cut(s) 242, 270
LweI GCATC 1 cut(s) 342
MaeII ACGT 3 cut(s) 129, 204, 345
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 2 cut(s) 43, 46
MhlI GDGCHC 3 cut(s) 137, 170, 225
MnlI CCTC 6 cut(s) 16, 44, 50, 59, 163, 272
MseI TTAA 2 cut(s) 315, 342
MspA1I CMGCKG 1 cut(s) 293
MwoI GCNNNNNNNGC 4 cut(s) 11, 84, 103, 317
NdeII GATC 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 64
PkrI GCNGC 3 cut(s) 257, 260, 292
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 260
SaqAI TTAA 2 cut(s) 315, 342
SatI GCNGC 3 cut(s) 256, 259, 291
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 236
SduI GDGCHC 3 cut(s) 137, 170, 225
SetI ASST 9 cut(s) 132, 182, 196, 207, 228, 342, 348, 365, 393
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 1 cut(s) 256
SinI GGWCC 1 cut(s) 236
SsiI CCGC 3 cut(s) 95, 138, 291
StyI CCWWGG 2 cut(s) 9, 171
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 3 cut(s) 132, 207, 348
TauI GCSGC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 315, 342
Tru9I TTAA 2 cut(s) 315, 342
TscAI CASTG 2 cut(s) 28, 313
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 255, 258
Tsp45I GTSAC 1 cut(s) 64
TspRI CASTG 2 cut(s) 28, 313
VneI GTGCAC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 236
XagI CCTNNNNNAGG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.