Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011770.1

Orthogroup ID

OG0017044

Physical Location & Seq

Genomic Coordinates Reverse (-)

6472 .. 6888

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011770.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggcttccaaggctttagctaccactgcttttctcctctcccttaacctcctcttcttcactttggtcacctccacaagcactccttgcccaccaccgcctaagaagcaccaccaccacccaaaaaacgcaagccctgcaccgcccaagccctctaaggccgtgtgccccaaggacaccttgaagttgggagcttgcgctgacgtgttgaacggcttggtgcaccttgtggttggtccaccaaagttcccttgctgcagcctcattcagggtctggttgacctcgatgccgctgtgtgcctctgcactgctattaaggctaatgttctgggcatcaaccttaacgtccccgtttcgttgagcttgctcttgaactactgtggcaaaaaggttccatctggctacgaatgtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrophob_seed

Protein Analysis

138

Amino Acids

14.38

Weight (kDa)

9.03

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45180
fragaria_vesca	FvH4_5g00110
prunus_persica	Prupe.5G072800_v2.0.a1
pyrus_communis	pycom06g06270
rosa_chinensis	RchiOBHm_Chr7g0202821
rosa_laevigata	RLG00000003569
rosa_multiflora	Rmu_sc0011770.1_g000001
rosa_rugosa	Rorug07G0073300
rosa_samantha	Rh7AG201100 Rh7BG201300 Rh7CG212500 Rh7DG208000
rosa_wichuraiana	Rw7G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	98, 143, 291
AdeI	CACNNNGTG	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	3 cut(s)	184, 211, 373
AjiI	CACGTC	1 cut(s)	205
AluBI	AGCT	3 cut(s)	20, 194, 363
AluI	AGCT	3 cut(s)	20, 194, 363
Alw21I	GWGCWC	1 cut(s)	225
Alw44I	GTGCAC	1 cut(s)	221
AlwNI	CAGNNNCTG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	255, 258
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	2 cut(s)	170, 225
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	242, 270
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	2 cut(s)	146, 229
BfmI	CTRYAG	1 cut(s)	256
BisI	GCNGC	3 cut(s)	256, 259, 291
BlsI	GCNGC	3 cut(s)	257, 260, 292
Bme18I	GGWCC	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	393
BmsI	GCATC	2 cut(s)	277, 342
BsaJI	CCNNGG	2 cut(s)	9, 171
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	9, 171
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseRI	GAGGAG	2 cut(s)	26, 41
BseSI	GKGCMC	2 cut(s)	170, 225
BseXI	GCAGC	2 cut(s)	242, 270
BsgI	GTGCAG	2 cut(s)	123, 289
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	170, 225
BspACI	CCGC	3 cut(s)	98, 143, 291
BspANI	GGCC	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	393
BspMAI	CTGCAG	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	9, 171
BssT1I	CCWWGG	2 cut(s)	9, 171
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	59
BstAPI	GCANNNNNTGC	2 cut(s)	87, 137
BstC8I	GCNNGC	3 cut(s)	133, 196, 365
BstDEI	CTNAG	2 cut(s)	102, 156
BstEII	GGTNACC	1 cut(s)	67
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 26, 87, 106, 137, 317
BstPI	GGTNACC	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	256
BstSLI	GKGCMC	2 cut(s)	170, 225
BstV1I	GCAGC	2 cut(s)	242, 270
BsuRI	GGCC	1 cut(s)	161
BtrI	CACGTC	1 cut(s)	205
BtsI	GCAGTG	2 cut(s)	24, 306
BtsIMutI	CAGTG	2 cut(s)	24, 306
Cac8I	GCNNGC	3 cut(s)	133, 196, 365
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	102, 156
DraIII	CACNNNGTG	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	2 cut(s)	9, 171
Eco47I	GGWCC	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	9, 171
ErhI	CCWWGG	2 cut(s)	9, 171
FalI	AAGNNNNNCTT	4 cut(s)	70, 102, 164, 196
FaqI	GGGAC	1 cut(s)	332
Fnu4HI	GCNGC	3 cut(s)	256, 259, 291
Fsp4HI	GCNGC	3 cut(s)	256, 259, 291
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	256, 259, 291
HaeIII	GGCC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	3 cut(s)	223, 239, 280
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	3 cut(s)	223, 239, 280
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	2 cut(s)	204, 345
HpyCH4V	TGCA	4 cut(s)	140, 223, 258, 306
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 26, 87, 106, 137, 317
HpyF3I	CTNAG	2 cut(s)	102, 156
HpySE526I	ACGT	2 cut(s)	204, 345
HspAI	GCGC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	5 cut(s)	150, 254, 260, 314, 384
Lsp1109I	GCAGC	2 cut(s)	242, 270
LweI	GCATC	2 cut(s)	277, 342
MaeII	ACGT	2 cut(s)	204, 345
MaeIII	GTNAC	1 cut(s)	67
MboII	GAAGA	2 cut(s)	46, 49
MhlI	GDGCHC	2 cut(s)	170, 225
MnlI	CCTC	8 cut(s)	47, 59, 62, 82, 163, 272, 293, 311
MseI	TTAA	3 cut(s)	45, 315, 342
MspA1I	CMGCKG	1 cut(s)	293
MwoI	GCNNNNNNNGC	6 cut(s)	11, 26, 87, 106, 137, 317
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	67
PkrI	GCNGC	3 cut(s)	257, 260, 292
PspEI	GGTNACC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	274
SaqAI	TTAA	3 cut(s)	45, 315, 342
SatI	GCNGC	3 cut(s)	256, 259, 291
Sau96I	GGNCC	1 cut(s)	236
SduI	GDGCHC	2 cut(s)	170, 225
SfaNI	GCATC	2 cut(s)	277, 342
SfcI	CTRYAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	236
SsiI	CCGC	3 cut(s)	98, 143, 291
StyI	CCWWGG	2 cut(s)	9, 171
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	2 cut(s)	207, 348
TaqI	TCGA	1 cut(s)	285
TauI	GCSGC	1 cut(s)	293
Tru1I	TTAA	3 cut(s)	45, 315, 342
Tru9I	TTAA	3 cut(s)	45, 315, 342
TscAI	CASTG	2 cut(s)	31, 313
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	255, 258
Tsp45I	GTSAC	1 cut(s)	67
TspRI	CASTG	2 cut(s)	31, 313
VneI	GTGCAC	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	236
XagI	CCTNNNNNAGG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.