Prupe.5G072800_v2.0.a1

14 kDa proline-rich protein DC2.15-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0017044
Physical Location & Seq
Forward (+)
8740555 .. 8741387
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G072800.1

Sequence Viewer

Length: 429 bp
ATGGCTTCCAAGGCTCTAGCTTCCACTGCTCTCCTCCTCTCCCTTAACCTCCTCTTCTTCACTTTGGTCACCTCCACCAATGTTGCTTGCCCACCACCTCAGAAAAAGGGTCATAAACACCAGCCCAAGCATGCAAGTCCTGCACTACCCAACCCTAACCCCTCTAAGCCTGCCACGTGCCCCAAAGACACATTGAAATTGGGGGCATGTGCTGACTTGTTGAATGGTTTGGTGCACCTTGTTGTTGGTCCACCAAAGTTCCCTTGCTGCAGCCTCATTGAGGGCCTTGTTGATCTTGATGCTGCTGTGTGCCTTTGCACTGCAATCAAAGCTAATGTCTTGGGGATCCACTTAAACATCCCCGTTTCACTCAGCCTGCTCTTGAACTACTGCGGGAAGCAGGTCCCAAGTGGCTACGAGTGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

143

Amino Acids

14.79

Weight (kDa)

8.76

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45180
fragaria_vesca FvH4_5g00110
prunus_persica Prupe.5G072800_v2.0.a1
pyrus_communis pycom06g06270
rosa_chinensis RchiOBHm_Chr7g0202821
rosa_laevigata RLG00000003569
rosa_multiflora Rmu_sc0011770.1_g000001
rosa_rugosa Rorug07G0073300
rosa_samantha Rh7AG201100 Rh7BG201300 Rh7CG212500 Rh7DG208000
rosa_wichuraiana Rw7G017590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 391
AciI CCGC 1 cut(s) 393
AclWI GGATC 2 cut(s) 340, 353
AcvI CACGTG 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 3 cut(s) 196, 223, 385
AluBI AGCT 2 cut(s) 20, 332
AluI AGCT 2 cut(s) 20, 332
Alw21I GWGCWC 1 cut(s) 237
Alw44I GTGCAC 1 cut(s) 233
AlwI GGATC 2 cut(s) 340, 353
AoxI GGCC 1 cut(s) 283
ApaLI GTGCAC 1 cut(s) 233
ApeKI GCWGC 3 cut(s) 267, 270, 302
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AspS9I GGNCC 3 cut(s) 248, 283, 403
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 2 cut(s) 248, 403
BaeGI GKGCMC 2 cut(s) 182, 237
BamHI GGATCC 1 cut(s) 345
BbrPI CACGTG 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 254, 282, 289
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 391
BisI GCNGC 3 cut(s) 268, 271, 303
BlsI GCNGC 3 cut(s) 269, 272, 304
Bme18I GGWCC 2 cut(s) 248, 403
BmgT120I GGNCC 3 cut(s) 248, 283, 403
BmiI GGNNCC 2 cut(s) 347, 405
BmsI GCATC 1 cut(s) 289
BsaAI YACGTR 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 113, 385
BseRI GAGGAG 3 cut(s) 23, 26, 41
BseSI GKGCMC 2 cut(s) 182, 237
BseXI GCAGC 3 cut(s) 254, 282, 289
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 237
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 182, 237
Bsp143I GATC 2 cut(s) 292, 345
BspACI CCGC 1 cut(s) 393
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 2 cut(s) 112, 384
BspLI GGNNCC 2 cut(s) 347, 405
BspMAI CTGCAG 1 cut(s) 272
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 2 cut(s) 340, 353
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 2 cut(s) 292, 345
BssT1I CCWWGG 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 177
BstC8I GCNNGC 4 cut(s) 88, 132, 171, 377
BstDEI CTNAG 3 cut(s) 99, 165, 371
BstEII GGTNACC 1 cut(s) 67
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 2 cut(s) 295, 348
BstMBI GATC 2 cut(s) 292, 345
BstMWI GCNNNNNNNGC 4 cut(s) 11, 26, 140, 329
BstNSI RCATGY 2 cut(s) 134, 210
BstPI GGTNACC 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 268
BstSLI GKGCMC 2 cut(s) 182, 237
BstV1I GCAGC 3 cut(s) 254, 282, 289
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 357
BtsI GCAGTG 2 cut(s) 24, 318
BtsIMutI CAGTG 2 cut(s) 24, 318
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 4 cut(s) 88, 132, 171, 377
Cfr13I GGNCC 3 cut(s) 248, 283, 403
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 2 cut(s) 131, 207
DdeI CTNAG 3 cut(s) 99, 165, 371
DpnI GATC 2 cut(s) 294, 347
DpnII GATC 2 cut(s) 292, 345
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 248, 403
Eco72I CACGTG 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoO109I RGGNCCY 2 cut(s) 283, 403
EcoO65I GGTNACC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 134, 210
FaiI YATR 3 cut(s) 114, 132, 208
FaqI GGGAC 1 cut(s) 389
FatI CATG 2 cut(s) 130, 206
FauI CCCGC 1 cut(s) 386
Fnu4HI GCNGC 3 cut(s) 268, 271, 303
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 3 cut(s) 268, 271, 303
FspBI CTAG 1 cut(s) 17
GluI GCNGC 3 cut(s) 268, 271, 303
HaeIII GGCC 1 cut(s) 285
Hin1II CATG 2 cut(s) 134, 210
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 235, 251
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 296, 382
Hpy8I GTNNAC 2 cut(s) 235, 251
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 6 cut(s) 134, 143, 235, 270, 318, 323
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 26, 140, 329
HpyF3I CTNAG 3 cut(s) 99, 165, 371
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 2 cut(s) 134, 210
Kzo9I GATC 2 cut(s) 292, 345
LpnPI CCDG 5 cut(s) 134, 153, 183, 386, 389
Lsp1109I GCAGC 3 cut(s) 254, 282, 289
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 294, 347
MboI GATC 2 cut(s) 292, 345
MboII GAAGA 2 cut(s) 46, 49
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 2 cut(s) 182, 237
MluCI AATT 1 cut(s) 197
MnlI CCTC 9 cut(s) 44, 47, 59, 62, 82, 108, 172, 274, 284
MseI TTAA 3 cut(s) 45, 353, 427
MwoI GCNNNNNNNGC 4 cut(s) 11, 26, 140, 329
NdeII GATC 2 cut(s) 292, 345
NlaIII CATG 2 cut(s) 134, 210
NlaIV GGNNCC 2 cut(s) 347, 405
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 2 cut(s) 134, 210
PaeI GCATGC 1 cut(s) 134
PkrI GCNGC 3 cut(s) 269, 272, 304
PmaCI CACGTG 1 cut(s) 177
PmlI CACGTG 1 cut(s) 177
Ppu21I YACGTR 1 cut(s) 177
PpuMI RGGWCCY 1 cut(s) 403
Psp5II RGGWCCY 1 cut(s) 403
PspCI CACGTG 1 cut(s) 177
PspEI GGTNACC 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 347, 405
PspPI GGNCC 3 cut(s) 248, 283, 403
PspPPI RGGWCCY 1 cut(s) 403
PstI CTGCAG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 345
SaqAI TTAA 3 cut(s) 45, 353, 427
SatI GCNGC 3 cut(s) 268, 271, 303
Sau3AI GATC 2 cut(s) 292, 345
Sau96I GGNCC 3 cut(s) 248, 283, 403
SduI GDGCHC 2 cut(s) 182, 237
SetI ASST 8 cut(s) 22, 51, 74, 100, 179, 240, 334, 405
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 1 cut(s) 268
SinI GGWCC 2 cut(s) 248, 403
SphI GCATGC 1 cut(s) 134
Sse9I AATT 1 cut(s) 197
SsiI CCGC 1 cut(s) 393
SspMI CTAG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 9
TaiI ACGT 1 cut(s) 179
TasI AATT 1 cut(s) 197
Tru1I TTAA 3 cut(s) 45, 353, 427
Tru9I TTAA 3 cut(s) 45, 353, 427
TscAI CASTG 2 cut(s) 31, 325
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 3 cut(s) 267, 270, 302
Tsp45I GTSAC 1 cut(s) 67
TspRI CASTG 2 cut(s) 31, 325
VneI GTGCAC 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 248, 403
XagI CCTNNNNNAGG 1 cut(s) 278
XceI RCATGY 2 cut(s) 134, 210
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.