Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016326

Physical Location & Seq

Genomic Coordinates Forward (+)

1240614 .. 1241518

Gene Structure 905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGGCAAGCAGGAAAGTACTCGGGATTCATGATGTCTGGAGGCATATCGGGGAGAACCGGACCACACTCGTTGCCGCTGGCCAGGATCAAGAAGATCATGAAGAAATCCGGAGAGGACGTGAAGATGATATCCGGGGAGGCTCCGATTGTGTTCTCAAAGGCGTGTGAGCTGTTTATAGAGGAGCTCACACGGAGGTCTTGGGCGACCACGCTGCAAGGGAAGAGGAGGACGCTGCACAAAGACGACGTGGCCTCGGCGGTCGTGGCCACCGATATCTTTGATTTTCTGGTCAGTATGGTTTCGGAGACTGCTTCTCATATTGAAGATGGGACGTCACCGGAGGAAGAGGAAATAGTGAGGCTGCCATGCATAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

127

Amino Acids

13.84

Weight (kDa)

6.83

Isoelectric Point (pI)

67.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	23 - 88	2.4e-14	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	24 - 88	2.3e-18	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016326)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01980
malus_domestica	MD06G1078500.v1.1
prunus_persica	Prupe.5G096000_v2.0.a1
pyrus_communis	pycom06g07580 pycom06g07590
rosa_chinensis	RchiOBHm_Chr7g0198391
rosa_laevigata	RLG00000003871
rosa_multiflora	Rmu_sc0001250.1_g000014
rosa_roxburghii	Rroxscaffold_3G00257730
rosa_rugosa	Rorug07G0047700
rosa_samantha	Rh7AG171400 Rh7BG174100 Rh7CG180200 Rh7DG173300
rosa_wichuraiana	Rw7G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	2 cut(s)	77, 260
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	2 cut(s)	81, 267
AcyI	GRCGYC	1 cut(s)	335
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	326
AjiI	CACGTC	2 cut(s)	121, 250
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	2 cut(s)	172, 187
AluI	AGCT	2 cut(s)	172, 187
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	22
Aor13HI	TCCGGA	1 cut(s)	110
AoxI	GGCC	3 cut(s)	81, 252, 267
ApeKI	GCWGC	3 cut(s)	214, 235, 364
AspS9I	GGNCC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	330
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	62
BalI	TGGCCA	2 cut(s)	83, 269
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	201, 222, 351
BccI	CCATC	1 cut(s)	323
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	302
BisI	GCNGC	4 cut(s)	77, 215, 236, 365
BlsI	GCNGC	4 cut(s)	78, 216, 237, 366
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	85, 136
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	22
BmgBI	CACGTC	2 cut(s)	121, 250
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	85, 136
BpmI	CTGGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	135, 255
BsaWI	WCCGGW	3 cut(s)	59, 110, 340
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
BseAI	TCCGGA	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	135, 255
BseRI	GAGGAG	2 cut(s)	197, 241
BseXI	GCAGC	3 cut(s)	201, 222, 351
BsgI	GTGCAG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	83, 254, 269
BsiEI	CGRYCG	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	4 cut(s)	60, 111, 135, 341
BslFI	GGGAC	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	3 cut(s)	83, 254, 269
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp13I	TCCGGA	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	87, 96
BspACI	CCGC	2 cut(s)	77, 260
BspANI	GGCC	3 cut(s)	83, 254, 269
BspEI	TCCGGA	1 cut(s)	110
BspHI	TCATGA	2 cut(s)	30, 99
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	135, 255
BssMI	GATC	2 cut(s)	87, 96
BssNI	GRCGYC	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	85
Bst6I	CTCTTC	2 cut(s)	218, 342
BstACI	GRCGYC	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	9, 81
BstKTI	GATC	2 cut(s)	90, 99
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	2 cut(s)	87, 96
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	2 cut(s)	83, 134
BstV1I	GCAGC	3 cut(s)	201, 222, 351
BsuRI	GGCC	3 cut(s)	83, 254, 269
BtrI	CACGTC	2 cut(s)	121, 250
Cac8I	GCNNGC	2 cut(s)	9, 81
CciI	TCATGA	2 cut(s)	30, 99
Cfr13I	GGNCC	1 cut(s)	62
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	19
CspCI	CAANNNNNGTGG	2 cut(s)	54, 89
CviAII	CATG	3 cut(s)	31, 100, 369
CviJI	RGCY	7 cut(s)	83, 143, 172, 187, 254, 269, 364
CviKI_1	RGCY	7 cut(s)	83, 143, 172, 187, 254, 269, 364
CviQI	GTAC	1 cut(s)	19
DpnI	GATC	2 cut(s)	89, 98
DpnII	GATC	2 cut(s)	87, 96
EaeI	YGGCCR	2 cut(s)	81, 267
Eam1104I	CTCTTC	2 cut(s)	218, 342
EarI	CTCTTC	2 cut(s)	218, 342
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco32I	GATATC	2 cut(s)	132, 277
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	187
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	83
EcoRV	GATATC	2 cut(s)	132, 277
EcoT22I	ATGCAT	1 cut(s)	374
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	3 cut(s)	34, 103, 372
FaiI	YATR	8 cut(s)	32, 47, 101, 179, 299, 321, 370, 374
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	3 cut(s)	30, 99, 368
Fnu4HI	GCNGC	4 cut(s)	77, 215, 236, 365
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	4 cut(s)	77, 215, 236, 365
GluI	GCNGC	4 cut(s)	77, 215, 236, 365
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	83, 254, 269
HapII	CCGG	4 cut(s)	60, 111, 135, 341
HgaI	GACGC	1 cut(s)	241
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	3 cut(s)	34, 103, 372
HinfI	GANTC	1 cut(s)	27
HpaII	CCGG	4 cut(s)	60, 111, 135, 341
HphI	GGTGA	1 cut(s)	330
Hpy188I	TCNGA	3 cut(s)	147, 307, 380
Hpy188III	TCNNGA	6 cut(s)	24, 31, 39, 91, 100, 111
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4IV	ACGT	3 cut(s)	120, 249, 335
HpyCH4V	TGCA	3 cut(s)	217, 238, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpySE526I	ACGT	3 cut(s)	120, 249, 335
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	3 cut(s)	34, 103, 372
Kpn2I	TCCGGA	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	87, 96
LmnI	GCTCC	2 cut(s)	148, 184
LpnPI	CCDG	9 cut(s)	24, 65, 70, 73, 97, 124, 148, 275, 354
Lsp1109I	GCAGC	3 cut(s)	201, 222, 351
MaeII	ACGT	3 cut(s)	120, 249, 335
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	2 cut(s)	89, 98
MboI	GATC	2 cut(s)	87, 96
MboII	GAAGA	6 cut(s)	106, 115, 136, 235, 338, 359
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	2 cut(s)	83, 269
MluNI	TGGCCA	2 cut(s)	83, 269
Mox20I	TGGCCA	2 cut(s)	83, 269
Mph1103I	ATGCAT	1 cut(s)	374
MroI	TCCGGA	1 cut(s)	110
MscI	TGGCCA	2 cut(s)	83, 269
Msp20I	TGGCCA	2 cut(s)	83, 269
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	4 cut(s)	60, 111, 135, 341
MspR9I	CCNGG	2 cut(s)	85, 136
MvaI	CCWGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	266
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	87, 96
NlaIII	CATG	3 cut(s)	34, 103, 372
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	336
NsiI	ATGCAT	1 cut(s)	374
PagI	TCATGA	2 cut(s)	30, 99
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	78, 216, 237, 366
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	62
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	189
SatI	GCNGC	4 cut(s)	77, 215, 236, 365
Sau3AI	GATC	2 cut(s)	87, 96
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	85, 136
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	6 cut(s)	123, 174, 189, 200, 252, 338
SinI	GGWCC	1 cut(s)	62
SsiI	CCGC	2 cut(s)	77, 260
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	83, 134
TaiI	ACGT	3 cut(s)	123, 252, 338
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	336
TseI	GCWGC	3 cut(s)	214, 235, 364
Tsp45I	GTSAC	1 cut(s)	336
TspDTI	ATGAA	2 cut(s)	19, 116
TspGWI	ACGGA	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	62
ZraI	GACGTC	1 cut(s)	336
ZrmI	AGTACT	1 cut(s)	20
Zsp2I	ATGCAT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.