Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0016326

Physical Location & Seq

Genomic Coordinates Forward (+)

19362575 .. 19362940

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1078500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGGCAACCGAGAAGGTATTCAGGATTGACGATGTGTGGCGGCATATCAGGGAGAACTGGGCCCCACTCGCTACCGTTGGCGAGGATCAAGAAGATCATGAAGAACTCTGGGGAGGATGTGAAGATGATATCTGGGGAGGCTCCAATTGTGTTCTCAAAGGCATGTGAGATGTTCATAGAGGAGCTCACTCGGAGGTCTTGGATGACCACCCTCGAAGGGAAGAGGAGGACAGTGCACAAAGACGATGTAGCGTCGGCTGTCGTAGCCACTGATATCTTCGATTTTCTTGTCAGTTTGGTTTCGGGGTCGTGCTGTTCTGAAGACATCACACCGGTGGAAATTGAAACATTGGAGAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

122

Amino Acids

13.37

Weight (kDa)

7.67

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	23 - 88	3.7e-14	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	24 - 88	2.7e-18	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016326)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01980
malus_domestica	MD06G1078500.v1.1
prunus_persica	Prupe.5G096000_v2.0.a1
pyrus_communis	pycom06g07580 pycom06g07590
rosa_chinensis	RchiOBHm_Chr7g0198391
rosa_laevigata	RLG00000003871
rosa_multiflora	Rmu_sc0001250.1_g000014
rosa_roxburghii	Rroxscaffold_3G00257730
rosa_rugosa	Rorug07G0047700
rosa_samantha	Rh7AG171400 Rh7BG174100 Rh7CG180200 Rh7DG173300
rosa_wichuraiana	Rw7G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	1 cut(s)	347
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
Alw21I	GWGCWC	2 cut(s)	189, 240
Alw44I	GTGCAC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	62
ApaI	GGGCCC	1 cut(s)	66
ApaLI	GTGCAC	1 cut(s)	236
AsiGI	ACCGGT	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	62, 63
BaeGI	GKGCMC	2 cut(s)	66, 240
BanII	GRGCYC	2 cut(s)	66, 189
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	189, 240
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	62, 63
BmiI	GGNNCC	3 cut(s)	64, 65, 144
BmrI	ACTGGG	1 cut(s)	69
BmuI	ACTGGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	64
BseGI	GGATG	2 cut(s)	124, 210
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	2 cut(s)	197, 241
BseSI	GKGCMC	2 cut(s)	66, 240
BshFI	GGCC	1 cut(s)	64
BshTI	ACCGGT	1 cut(s)	334
BsiHKAI	GWGCWC	2 cut(s)	189, 240
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	219
BsnI	GGCC	1 cut(s)	64
Bsp120I	GGGCCC	1 cut(s)	62
Bsp1286I	GDGCHC	3 cut(s)	66, 189, 240
Bsp143I	GATC	2 cut(s)	87, 96
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	64, 65, 144
BspPI	GGATC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	334
BssMI	GATC	2 cut(s)	87, 96
Bst4CI	ACNGT	2 cut(s)	78, 235
Bst6I	CTCTTC	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	124, 210
BstKTI	GATC	2 cut(s)	90, 99
BstMBI	GATC	2 cut(s)	87, 96
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 266
BstNSI	RCATGY	1 cut(s)	168
BstSLI	GKGCMC	2 cut(s)	66, 240
BstV2I	GAAGAC	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	124, 210
BtsIMutI	CAGTG	2 cut(s)	240, 270
CciI	TCATGA	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	62, 63
CseI	GACGC	1 cut(s)	243
CspAI	ACCGGT	1 cut(s)	334
CviAII	CATG	2 cut(s)	100, 165
CviJI	RGCY	5 cut(s)	64, 143, 187, 260, 269
CviKI_1	RGCY	5 cut(s)	64, 143, 187, 260, 269
DpnI	GATC	2 cut(s)	89, 98
DpnII	GATC	2 cut(s)	87, 96
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	66, 189
Eco32I	GATATC	2 cut(s)	132, 277
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRV	GATATC	2 cut(s)	132, 277
EcoT38I	GRGCYC	2 cut(s)	66, 189
FaeI	CATG	2 cut(s)	103, 168
FaiI	YATR	5 cut(s)	47, 101, 166, 179, 364
FatI	CATG	2 cut(s)	99, 164
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	2 cut(s)	131, 217
FriOI	GRGCYC	2 cut(s)	66, 189
Fsp4HI	GCNGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	103, 168
HpaII	CCGG	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	2 cut(s)	195, 322
Hpy188III	TCNNGA	3 cut(s)	24, 91, 100
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	9, 212
HpyCH4III	ACNGT	2 cut(s)	78, 235
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 266
Hsp92II	CATG	2 cut(s)	103, 168
Kzo9I	GATC	2 cut(s)	87, 96
LmnI	GCTCC	2 cut(s)	148, 184
LpnPI	CCDG	6 cut(s)	9, 36, 45, 96, 120, 348
MalI	GATC	2 cut(s)	89, 98
MboI	GATC	2 cut(s)	87, 96
MboII	GAAGA	6 cut(s)	106, 115, 136, 235, 271, 335
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	3 cut(s)	66, 189, 240
MluCI	AATT	2 cut(s)	147, 342
MnlI	CCTC	8 cut(s)	78, 109, 133, 175, 189, 219, 222, 224
MroXI	GAANNNNTTC	1 cut(s)	19
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	1 cut(s)	335
MunI	CAATTG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	70, 266
NdeII	GATC	2 cut(s)	87, 96
NlaIII	CATG	2 cut(s)	103, 168
NlaIV	GGNNCC	3 cut(s)	64, 65, 144
NspI	RCATGY	1 cut(s)	168
OliI	CACNNNNGTG	1 cut(s)	335
PagI	TCATGA	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	19
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	64, 65, 144
PspOMI	GGGCCC	1 cut(s)	62
PspPI	GGNCC	2 cut(s)	62, 63
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	189
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	2 cut(s)	87, 96
Sau96I	GGNCC	2 cut(s)	62, 63
SduI	GDGCHC	3 cut(s)	66, 189, 240
SetI	ASST	3 cut(s)	20, 189, 200
SgrAI	CRCCGGYG	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	147, 342
SsiI	CCGC	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	78, 235
TaqI	TCGA	2 cut(s)	216, 282
TasI	AATT	2 cut(s)	147, 342
TauI	GCSGC	1 cut(s)	45
TscAI	CASTG	2 cut(s)	240, 277
TspDTI	ATGAA	2 cut(s)	116, 166
TspRI	CASTG	2 cut(s)	240, 277
VneI	GTGCAC	1 cut(s)	236
XceI	RCATGY	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.