Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0016326

Physical Location & Seq

Genomic Coordinates Forward (+)

10523596 .. 10524073

Gene Structure 478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G096000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGGCAACCGGGAAGGTACTCAGGATTCATGATGCATGGAGGCATATCTGGGAGGACTGGGCCCCACTCATTGCCCTTGGCGAGGATCAAGAAGATCATGAAGAAGTCCGGGGAGGACGTGAAGATGATATCTGGCGAGGCTCCAATTGTGTTCTCAAAGGCATGTGAGCTGTTCATAGAGGAACTCACTCGGAGGTCTTGGATGACAACCCTGGAAGGGAAGAGAAGGACACTGCACAAAGACGACGTTGCCTCGGCCGTCGTAGGCACCGATATCTTTGATTTTCTTGTGAGTTTGGTTTCGGATTCTTGCCATTCTGAAGACATCACGCCGGCGGACAAGGAGGCATTGGGGGGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

122

Amino Acids

13.26

Weight (kDa)

7.82

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016326)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01980
malus_domestica	MD06G1078500.v1.1
prunus_persica	Prupe.5G096000_v2.0.a1
pyrus_communis	pycom06g07580 pycom06g07590
rosa_chinensis	RchiOBHm_Chr7g0198391
rosa_laevigata	RLG00000003871
rosa_multiflora	Rmu_sc0001250.1_g000014
rosa_roxburghii	Rroxscaffold_3G00257730
rosa_rugosa	Rorug07G0047700
rosa_samantha	Rh7AG171400 Rh7BG174100 Rh7CG180200 Rh7DG173300
rosa_wichuraiana	Rw7G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	84, 219
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	2 cut(s)	62, 258
ApaI	GGGCCC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	62, 63
AsuC2I	CCSGG	2 cut(s)	12, 112
BaeGI	GKGCMC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	330
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	2 cut(s)	12, 112
Bme1390I	CCNGG	3 cut(s)	12, 112, 215
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	62, 63
BmiI	GGNNCC	4 cut(s)	64, 65, 144, 271
BmrFI	CCNGG	3 cut(s)	12, 112, 215
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	330
BpuMI	CCSGG	2 cut(s)	12, 112
BsaJI	CCNNGG	4 cut(s)	78, 111, 213, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 219
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	4 cut(s)	78, 111, 213, 255
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	84, 219
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	66
BseX3I	CGGCCG	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	64, 260
BshNI	GGYRCC	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	261
BsiSI	CCGG	3 cut(s)	11, 111, 335
BslI	CCNNNNNNNGG	2 cut(s)	84, 219
BsnI	GGCC	2 cut(s)	64, 260
Bsp120I	GGGCCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	87, 96, 359
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	2 cut(s)	64, 260
BspCNI	CTCAG	1 cut(s)	35
BspHI	TCATGA	2 cut(s)	30, 99
BspLI	GGNNCC	4 cut(s)	64, 65, 144, 271
BspPI	GGATC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	4 cut(s)	78, 111, 213, 255
BssMI	GATC	3 cut(s)	87, 96, 359
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	3 cut(s)	90, 99, 362
BstMBI	GATC	3 cut(s)	87, 96, 359
BstMCI	CGRYCG	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	3 cut(s)	10, 110, 213
BstSLI	GKGCMC	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	330
BstZI	CGGCCG	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	64, 260
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	336
CciI	TCATGA	2 cut(s)	30, 99
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	62, 63
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	4 cut(s)	31, 38, 100, 165
CviJI	RGCY	4 cut(s)	64, 143, 172, 260
CviKI_1	RGCY	4 cut(s)	64, 143, 172, 260
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	3 cut(s)	89, 98, 361
DpnII	GATC	3 cut(s)	87, 96, 359
EaeI	YGGCCR	1 cut(s)	258
EagI	CGGCCG	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	353
EclXI	CGGCCG	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	66
Eco32I	GATATC	2 cut(s)	132, 277
Eco52I	CGGCCG	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	342
EcoNI	CCTNNNNNAGG	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	2 cut(s)	132, 277
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	4 cut(s)	34, 41, 103, 168
FaiI	YATR	7 cut(s)	32, 39, 47, 101, 166, 179, 364
FatI	CATG	4 cut(s)	30, 37, 99, 164
FokI	GGATG	1 cut(s)	217
FriOI	GRGCYC	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	64, 260
HapII	CCGG	3 cut(s)	11, 111, 335
Hin1II	CATG	4 cut(s)	34, 41, 103, 168
HinfI	GANTC	2 cut(s)	27, 308
HpaII	CCGG	3 cut(s)	11, 111, 335
Hpy188I	TCNGA	3 cut(s)	195, 307, 322
Hpy188III	TCNNGA	4 cut(s)	24, 31, 91, 100
Hpy99I	CGWCG	2 cut(s)	251, 266
HpyAV	CCTTC	3 cut(s)	9, 212, 222
HpyCH4IV	ACGT	2 cut(s)	120, 249
HpyCH4V	TGCA	2 cut(s)	37, 238
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	2 cut(s)	120, 249
Hsp92II	CATG	4 cut(s)	34, 41, 103, 168
KroI	GCCGGC	1 cut(s)	334
KroNI	GCCGGC	1 cut(s)	336
Kzo9I	GATC	3 cut(s)	87, 96, 359
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	9 cut(s)	9, 24, 36, 45, 120, 124, 200, 227, 348
LweI	GCATC	1 cut(s)	24
MaeII	ACGT	2 cut(s)	120, 249
MalI	GATC	3 cut(s)	89, 98, 361
MboI	GATC	3 cut(s)	87, 96, 359
MboII	GAAGA	5 cut(s)	106, 115, 136, 235, 335
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	1 cut(s)	147
MnlI	CCTC	9 cut(s)	35, 48, 78, 109, 133, 175, 189, 265, 340
Mph1103I	ATGCAT	1 cut(s)	39
MreI	CGCCGGCG	1 cut(s)	334
MroNI	GCCGGC	1 cut(s)	334
MspI	CCGG	3 cut(s)	11, 111, 335
MspR9I	CCNGG	3 cut(s)	12, 112, 215
MunI	CAATTG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	215
NaeI	GCCGGC	1 cut(s)	336
NciI	CCSGG	2 cut(s)	12, 112
NdeII	GATC	3 cut(s)	87, 96, 359
NgoMIV	GCCGGC	1 cut(s)	334
NlaIII	CATG	4 cut(s)	34, 41, 103, 168
NlaIV	GGNNCC	4 cut(s)	64, 65, 144, 271
NmeAIII	GCCGAG	1 cut(s)	236
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	1 cut(s)	168
PagI	TCATGA	2 cut(s)	30, 99
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PdiI	GCCGGC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	27, 308
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	4 cut(s)	64, 65, 144, 271
PspOMI	GGGCCC	1 cut(s)	62
PspPI	GGNCC	2 cut(s)	62, 63
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
Sau3AI	GATC	3 cut(s)	87, 96, 359
Sau96I	GGNCC	2 cut(s)	62, 63
ScrFI	CCNGG	3 cut(s)	12, 112, 215
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	5 cut(s)	20, 123, 174, 200, 252
SfaNI	GCATC	1 cut(s)	24
SgrAI	CRCCGGYG	1 cut(s)	334
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	10, 110, 213
StyI	CCWWGG	1 cut(s)	78
TaiI	ACGT	2 cut(s)	123, 252
TasI	AATT	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	27, 308
TscAI	CASTG	1 cut(s)	240
TspDTI	ATGAA	3 cut(s)	19, 116, 166
TspRI	CASTG	1 cut(s)	240
XagI	CCTNNNNNAGG	1 cut(s)	82
XceI	RCATGY	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.