Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016326

Physical Location & Seq

Genomic Coordinates Forward (+)

52044622 .. 52044993

Gene Structure 372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAGGCAAGCAGGAAAGTACTCGGGTTTTATGATGTGTGGAGGCATATCGGGGAGAACCGGACCGCACTCGTTGCCGCTTGCGAGGATCAAGAAGATCATGAAGAAGTCCGGCGAGGACGTGAAGATGATATCCGGGGAGGCTCCGATTGTGTTCTCAAAGGCGTGTGAGCTGTTCATAGAGGAGCTCACACGGAGGTCTTGGGCGACCACGCTGCAAGGGAAGCGGAGGACGCTGCACAAAGACGATGTGGCCTCTGCCGTCGTGGCCACCGATATCTTTGATTTTCTTGTCAGTATGGTTTCGGAGACTGCATCTCATTCTGAAGATGGAACAGTACAGGAGGAAGAGGAAAAAGTGGGGTCGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010228 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0048518 GO:0048571 GO:0048573 GO:0048574 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000306 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

123

Amino Acids

13.44

Weight (kDa)

6.83

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	23 - 88	2.1e-14	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	24 - 88	2.2e-18	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0016326)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01980
malus_domestica	MD06G1078500.v1.1
prunus_persica	Prupe.5G096000_v2.0.a1
pyrus_communis	pycom06g07580 pycom06g07590
rosa_chinensis	RchiOBHm_Chr7g0198391
rosa_laevigata	RLG00000003871
rosa_multiflora	Rmu_sc0001250.1_g000014
rosa_roxburghii	Rroxscaffold_3G00257730
rosa_rugosa	Rorug07G0047700
rosa_samantha	Rh7AG171400 Rh7BG174100 Rh7CG180200 Rh7DG173300
rosa_wichuraiana	Rw7G014960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	65, 77, 226
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	20, 339
AjiI	CACGTC	1 cut(s)	121
AluBI	AGCT	2 cut(s)	172, 187
AluI	AGCT	2 cut(s)	172, 187
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	252, 267
ApeKI	GCWGC	2 cut(s)	214, 235
AspS9I	GGNCC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	201, 222
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	245
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	266
BisI	GCNGC	3 cut(s)	77, 215, 236
BlsI	GCNGC	3 cut(s)	78, 216, 237
BmcAI	AGTACT	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	201, 222
BsgI	GTGCAG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	254, 269
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	60, 111, 135
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	254, 269
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	87, 96
BspACI	CCGC	3 cut(s)	65, 77, 226
BspANI	GGCC	2 cut(s)	254, 269
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	87, 96
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	342
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	9, 81
BstKTI	GATC	2 cut(s)	90, 99
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	2 cut(s)	87, 96
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 223, 232, 266
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	201, 222
BsuRI	GGCC	2 cut(s)	254, 269
BtrI	CACGTC	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	9, 81
CciI	TCATGA	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	62
CpoI	CGGWCCG	1 cut(s)	62
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	19, 338
CspI	CGGWCCG	1 cut(s)	62
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	5 cut(s)	143, 172, 187, 254, 269
CviKI_1	RGCY	5 cut(s)	143, 172, 187, 254, 269
CviQI	GTAC	2 cut(s)	19, 338
DpnI	GATC	2 cut(s)	89, 98
DpnII	GATC	2 cut(s)	87, 96
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco32I	GATATC	2 cut(s)	132, 277
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	187
EcoRV	GATATC	2 cut(s)	132, 277
EcoT38I	GRGCYC	1 cut(s)	189
FaeI	CATG	1 cut(s)	103
FaiI	YATR	6 cut(s)	32, 47, 101, 179, 299, 370
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	77, 215, 236
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	3 cut(s)	77, 215, 236
GluI	GCNGC	3 cut(s)	77, 215, 236
HaeIII	GGCC	2 cut(s)	254, 269
HapII	CCGG	3 cut(s)	60, 111, 135
HgaI	GACGC	1 cut(s)	241
Hin1II	CATG	1 cut(s)	103
HpaII	CCGG	3 cut(s)	60, 111, 135
Hpy188I	TCNGA	3 cut(s)	147, 307, 325
Hpy188III	TCNNGA	2 cut(s)	91, 100
Hpy99I	CGWCG	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	217, 238, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 223, 232, 266
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	87, 96
LmnI	GCTCC	2 cut(s)	148, 184
LpnPI	CCDG	4 cut(s)	73, 124, 148, 326
Lsp1109I	GCAGC	2 cut(s)	201, 222
LweI	GCATC	1 cut(s)	323
MaeII	ACGT	1 cut(s)	120
MalI	GATC	2 cut(s)	89, 98
MboI	GATC	2 cut(s)	87, 96
MboII	GAAGA	5 cut(s)	106, 115, 136, 338, 359
MhlI	GDGCHC	1 cut(s)	189
MlsI	TGGCCA	1 cut(s)	269
MluNI	TGGCCA	1 cut(s)	269
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	3 cut(s)	60, 111, 135
MspR9I	CCNGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	4 cut(s)	73, 223, 232, 266
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	87, 96
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	144
PagI	TCATGA	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PkrI	GCNGC	3 cut(s)	78, 216, 237
Psp124BI	GAGCTC	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	62
RsaI	GTAC	2 cut(s)	20, 339
RsaNI	GTAC	2 cut(s)	19, 338
Rsr2I	CGGWCCG	1 cut(s)	62
RsrII	CGGWCCG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	189
SatI	GCNGC	3 cut(s)	77, 215, 236
Sau3AI	GATC	2 cut(s)	87, 96
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	4 cut(s)	123, 174, 189, 200
SfaNI	GCATC	1 cut(s)	323
SinI	GGWCC	1 cut(s)	62
SsiI	CCGC	3 cut(s)	65, 77, 226
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	123
TatI	WGTACW	2 cut(s)	18, 337
TauI	GCSGC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	214, 235
TspDTI	ATGAA	2 cut(s)	116, 166
TspGWI	ACGGA	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	62
ZrmI	AGTACT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.