FvH4_5g02645

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018434
Physical Location & Seq
Forward (+)
1590123 .. 1591096
974 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02645.t1

Sequence Viewer

Length: 363 bp
ATGAAACGCACATCGCGAGAAAGCAACAGAGAGGGAAGAATTGTTAACTTATCATCACTGTGCCATCAATATGTGTCTCGTGAAGGAATTCGTTTTGATAAAATTAATGATGAATCAAGCTACTACAAATATTTGGCCTATGGACAATCCAAGCTTGCTAATGTATTACATGCTAATGAGCTTTCAAGGCGTCTGAAGGGTGCAGCAACCACATGCTTTGTGGCACTCCATCCACAAGTTAAGGGAGTAAGTGGCGAGTATTTTGCAGACTGTAACATTGCCAAACCGAGCGATCAGGCCAAAGATGCAGATTTGGCTACCAAACTTTGGGATTTTAGCTTGAGCTTGACTGATCTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

121

Amino Acids

13.52

Weight (kDa)

9.01

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018434)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02645
prunus_persica Prupe.5G101800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0495811 RchiOBHm_Chr4g0430521
rosa_roxburghii Rroxscaffold_2G00135420
rosa_rugosa Rorug06G0043900 Rorug06G0044500
rosa_samantha Rh2CG350200 Rh7AG497900 Rh7DG441500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 327
AccII CGCG 1 cut(s) 16
AcsI RAATTY 1 cut(s) 87
AcuI CTGAAG 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 327
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 1 cut(s) 186
AluBI AGCT 5 cut(s) 120, 154, 181, 339, 345
AluI AGCT 5 cut(s) 120, 154, 181, 339, 345
Alw26I GTCTC 1 cut(s) 81
AoxI GGCC 2 cut(s) 135, 297
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 87
AseI ATTAAT 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 87
BauI CACGAG 1 cut(s) 78
BbvI GCAGC 1 cut(s) 215
BccI CCATC 2 cut(s) 72, 237
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BcoDI GTCTC 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 356
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
BmsI GCATC 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse3DI GCAATG 1 cut(s) 276
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 137, 299
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 2 cut(s) 137, 299
Bsp143I GATC 2 cut(s) 292, 352
Bsp68I TCGCGA 1 cut(s) 16
BspANI GGCC 2 cut(s) 137, 299
BspFNI CGCG 1 cut(s) 16
BspTI CTTAAG 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 276
BssMI GATC 2 cut(s) 292, 352
BssNI GRCGYC 1 cut(s) 190
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 60, 272
BstACI GRCGYC 1 cut(s) 190
BstAFI CTTAAG 1 cut(s) 356
BstC8I GCNNGC 1 cut(s) 156
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 16
BstKTI GATC 2 cut(s) 295, 355
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 2 cut(s) 292, 352
BstMWI GCNNNNNNNGC 3 cut(s) 187, 305, 314
BstNSI RCATGY 2 cut(s) 173, 216
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 215
BsuRI GGCC 2 cut(s) 137, 299
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 56
BtuMI TCGCGA 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 156
CseI GACGC 1 cut(s) 179
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 2 cut(s) 170, 213
CviJI RGCY 8 cut(s) 120, 137, 154, 181, 299, 317, 339, 345
CviKI_1 RGCY 8 cut(s) 120, 137, 154, 181, 299, 317, 339, 345
DpnI GATC 2 cut(s) 294, 354
DpnII GATC 2 cut(s) 292, 352
Eco57I CTGAAG 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 87
FaeI CATG 2 cut(s) 173, 216
FaiI YATR 4 cut(s) 72, 141, 171, 214
FatI CATG 2 cut(s) 169, 212
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 204
HaeIII GGCC 2 cut(s) 137, 299
HgaI GACGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 2 cut(s) 173, 216
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 113
HpaI GTTAAC 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 15, 80
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 77, 190
HpyCH4III ACNGT 2 cut(s) 60, 272
HpyCH4V TGCA 3 cut(s) 203, 266, 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 305, 314
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 2 cut(s) 173, 216
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 292, 352
LpnPI CCDG 1 cut(s) 281
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 272
MalI GATC 2 cut(s) 294, 354
MboI GATC 2 cut(s) 292, 352
MboII GAAGA 1 cut(s) 48
MluCI AATT 3 cut(s) 39, 87, 102
MnlI CCTC 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 4 cut(s) 45, 105, 240, 357
MslI CAYNNNNRTG 3 cut(s) 58, 69, 174
MspCI CTTAAG 1 cut(s) 356
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 3 cut(s) 187, 305, 314
NdeII GATC 2 cut(s) 292, 352
NlaIII CATG 2 cut(s) 173, 216
NruI TCGCGA 1 cut(s) 16
NspI RCATGY 2 cut(s) 173, 216
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 327
PkrI GCNGC 1 cut(s) 205
PshBI ATTAAT 1 cut(s) 105
RruI TCGCGA 1 cut(s) 16
RseI CAYNNNNRTG 3 cut(s) 58, 69, 174
SaqAI TTAA 4 cut(s) 45, 105, 240, 357
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 292, 352
SetI ASST 5 cut(s) 122, 156, 183, 341, 347
SfaNI GCATC 1 cut(s) 295
SmiMI CAYNNNNRTG 3 cut(s) 58, 69, 174
SmlI CTYRAG 2 cut(s) 340, 356
SmoI CTYRAG 2 cut(s) 340, 356
Sse9I AATT 3 cut(s) 39, 87, 102
SspI AATATT 1 cut(s) 131
TaaI ACNGT 2 cut(s) 60, 272
TasI AATT 3 cut(s) 39, 87, 102
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 4 cut(s) 45, 105, 240, 357
Tru9I TTAA 4 cut(s) 45, 105, 240, 357
TscAI CASTG 1 cut(s) 63
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 2 cut(s) 17, 126
TspRI CASTG 1 cut(s) 63
Van91I CCANNNNNTGG 1 cut(s) 327
Vha464I CTTAAG 1 cut(s) 356
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 1 cut(s) 87
XceI RCATGY 2 cut(s) 173, 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.