Rroxscaffold_2G00135420

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018434
Physical Location & Seq
Reverse (-)
73000366 .. 73002674
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135420.1

Sequence Viewer

Length: 297 bp
ATGACTGTGCAGGGTGCAGCAACCACATGCTTTGTGGCACTCCATCCACAAGTTAAGGGAGTAAGCGGCGAATATTTTGCAGACTCGTACATTGCCAAATTGAGCAATCGGGCCAAAGATGCAGATTTGGCTTCCAAACTTTGGGATTTTAGCTTGAGCATGACTAATCTCAAAGAAGAAAGAGTGGATATACCTTGTGAGGATATGAATCATACTTGTCTGAAACATGCTGAGCTCCACCCCATCACCATTGTTACAACCAGGTCCTACTTATTCATATATGGATTATATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

98

Amino Acids

11.0

Weight (kDa)

6.02

Isoelectric Point (pI)

9.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018434)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02645
prunus_persica Prupe.5G101800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0495811 RchiOBHm_Chr4g0430521
rosa_roxburghii Rroxscaffold_2G00135420
rosa_rugosa Rorug06G0043900 Rorug06G0044500
rosa_samantha Rh2CG350200 Rh7AG497900 Rh7DG441500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 141
AciI CCGC 1 cut(s) 66
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 141
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 2 cut(s) 153, 235
AluI AGCT 2 cut(s) 153, 235
Alw21I GWGCWC 1 cut(s) 237
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 111, 264
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 1 cut(s) 264
BanII GRGCYC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 51, 251
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 1 cut(s) 262
BisI GCNGC 2 cut(s) 18, 67
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 2 cut(s) 19, 68
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 111, 264
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 109
Bpu1102I GCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 43
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 29
BsgI GTGCAG 2 cut(s) 29, 36
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 141
BsnI GGCC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 237
Bsp1720I GCTNAGC 1 cut(s) 231
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 119, 128
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 2 cut(s) 30, 230
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 29
BsuRI GGCC 1 cut(s) 113
BtsCI GGATG 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 111, 264
CsiI ACCWGGT 1 cut(s) 260
Csp6I GTAC 1 cut(s) 88
CspCI CAANNNNNGTGG 2 cut(s) 13, 48
CviAII CATG 3 cut(s) 27, 160, 227
CviJI RGCY 4 cut(s) 113, 131, 153, 235
CviKI_1 RGCY 4 cut(s) 113, 131, 153, 235
CviQI GTAC 1 cut(s) 88
DdeI CTNAG 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 237
FaeI CATG 3 cut(s) 30, 163, 230
FatI CATG 3 cut(s) 26, 159, 226
Fnu4HI GCNGC 2 cut(s) 18, 67
FokI GGATG 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 18, 67
GluI GCNGC 2 cut(s) 18, 67
HaeIII GGCC 1 cut(s) 113
Hin1II CATG 3 cut(s) 30, 163, 230
HinfI GANTC 2 cut(s) 83, 208
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 222
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 4 cut(s) 10, 17, 80, 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 128
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 3 cut(s) 30, 163, 230
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 2 cut(s) 247, 274
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 109
MabI ACCWGGT 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 253
MboII GAAGA 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 98
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 1 cut(s) 193
MseI TTAA 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 119, 128
NlaIII CATG 3 cut(s) 30, 163, 230
NspI RCATGY 2 cut(s) 30, 230
PfeI GAWTC 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 19, 68
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PpuMI RGGWCCY 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PspPI GGNCC 2 cut(s) 111, 264
PspPPI RGGWCCY 1 cut(s) 264
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SacI GAGCTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 18, 67
Sau96I GGNCC 2 cut(s) 111, 264
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 237
SetI ASST 4 cut(s) 155, 196, 237, 266
SexAI ACCWGGT 1 cut(s) 260
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 98
SsiI CCGC 1 cut(s) 66
SspI AATATT 1 cut(s) 74
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 7
TasI AATT 1 cut(s) 98
TauI GCSGC 1 cut(s) 69
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 221, 265
Van91I CCANNNNNTGG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 264
XceI RCATGY 2 cut(s) 30, 230
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.