Rh2CG350200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018434
Physical Location & Seq
Forward (+)
47323022 .. 47324177
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG350200.1

Sequence Viewer

Length: 321 bp
ATGGCAATAGCAGCCCCTGGGCAGCTTAACCTCAACGAAGTCCCTTCATGGGGATCCAGAGGCGTCGACTGCTTCGAGAAATTGGAACAGATTGGCGAGGATATTGTGAAGGTGCTGAGTGTATTTATCATTCCGTTCATAAAAACTGTTCAACAGGGTGCAACAACCACATGCTTTGTGGCACTCCATCCACAAGTTAAGGGAGTAAGCGACGAATATTTTGCAGACTGTAACATTGCCAAACCGAGCAATCAGGCCAAAGATGCAGATTTGGCTTCCAAACTTTGGGATTTTAGCTTGAGCATGACTAATCTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

106

Amino Acids

11.56

Weight (kDa)

4.93

Isoelectric Point (pI)

18.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018434)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g02645
prunus_persica Prupe.5G101800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0495811 RchiOBHm_Chr4g0430521
rosa_roxburghii Rroxscaffold_2G00135420
rosa_rugosa Rorug06G0043900 Rorug06G0044500
rosa_samantha Rh2CG350200 Rh7AG497900 Rh7DG441500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 285
AccI GTMKAC 1 cut(s) 66
AclWI GGATC 2 cut(s) 48, 61
AcyI GRCGYC 1 cut(s) 63
AfiI CCNNNNNNNGG 3 cut(s) 49, 50, 285
AgsI TTSAA 1 cut(s) 152
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 2 cut(s) 25, 297
AluI AGCT 2 cut(s) 25, 297
AlwI GGATC 2 cut(s) 48, 61
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 11, 22
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
BamHI GGATCC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 23, 34
BccI CCATC 1 cut(s) 195
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 1 cut(s) 18
BisI GCNGC 2 cut(s) 12, 23
BlsI GCNGC 2 cut(s) 13, 24
Bme1390I CCNGG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 253
BpuEI CTTGAG 2 cut(s) 299, 319
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 16, 17
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 50, 285
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 16, 17
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 3 cut(s) 49, 50, 285
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 107
BseXI GCAGC 2 cut(s) 23, 34
BshFI GGCC 1 cut(s) 257
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 49, 50, 285
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 53
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 2 cut(s) 48, 61
BsrDI GCAATG 1 cut(s) 234
BssECI CCNNGG 2 cut(s) 16, 17
BssMI GATC 1 cut(s) 53
BssNI GRCGYC 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 2 cut(s) 148, 230
BstACI GRCGYC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 1 cut(s) 56
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 4 cut(s) 11, 69, 263, 272
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 23, 34
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 17
CseI GACGC 1 cut(s) 52
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 3 cut(s) 48, 171, 304
CviJI RGCY 5 cut(s) 14, 25, 257, 275, 297
CviKI_1 RGCY 5 cut(s) 14, 25, 257, 275, 297
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 16
FaeI CATG 3 cut(s) 51, 174, 307
FaiI YATR 4 cut(s) 49, 140, 172, 305
FaqI GGGAC 1 cut(s) 26
FatI CATG 3 cut(s) 47, 170, 303
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 12, 23
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 2 cut(s) 12, 23
GluI GCNGC 2 cut(s) 12, 23
HaeIII GGCC 1 cut(s) 257
HgaI GACGC 1 cut(s) 52
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 3 cut(s) 51, 174, 307
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 57, 76
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 2 cut(s) 68, 215
HpyAV CCTTC 2 cut(s) 54, 103
HpyCH4III ACNGT 2 cut(s) 148, 230
HpyCH4V TGCA 3 cut(s) 161, 224, 266
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 69, 263, 272
HpyF3I CTNAG 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 3 cut(s) 51, 174, 307
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 5 cut(s) 3, 30, 70, 140, 239
Lsp1109I GCAGC 2 cut(s) 23, 34
LweI GCATC 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 230
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MflI RGATCY 1 cut(s) 53
MluCI AATT 1 cut(s) 80
MnlI CCTC 3 cut(s) 41, 53, 91
MseI TTAA 2 cut(s) 27, 198
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 4 cut(s) 11, 69, 263, 272
NdeII GATC 1 cut(s) 53
NlaIII CATG 3 cut(s) 51, 174, 307
NlaIV GGNNCC 1 cut(s) 55
NspI RCATGY 1 cut(s) 174
PasI CCCWGGG 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 2 cut(s) 13, 24
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 17
PsuI RGATCY 1 cut(s) 53
SalI GTCGAC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 27, 198
SatI GCNGC 2 cut(s) 12, 23
Sau3AI GATC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 18
SetI ASST 4 cut(s) 27, 33, 114, 299
SfaNI GCATC 1 cut(s) 253
SmlI CTYRAG 2 cut(s) 298, 314
SmoI CTYRAG 2 cut(s) 298, 314
Sse9I AATT 1 cut(s) 80
SspI AATATT 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 2 cut(s) 148, 230
TaqI TCGA 2 cut(s) 66, 75
TasI AATT 1 cut(s) 80
Tru1I TTAA 2 cut(s) 27, 198
Tru9I TTAA 2 cut(s) 27, 198
TseI GCWGC 2 cut(s) 11, 22
TspDTI ATGAA 2 cut(s) 36, 127
TspGWI ACGGA 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 285
XceI RCATGY 1 cut(s) 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.