Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0018434

Physical Location & Seq

Genomic Coordinates Reverse (-)

5589495 .. 5590019

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0043900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAGGCAGAGCAATGCAACTAAGCAAAGCAAGTTGATGCGCTTTATATCTTCACCCATTAGGTCTCTAACCAAGGCCAAGAACTTCTACATAAAGAGTTTAGAAGATCGTGCTGCGAAGGTGGGTTATGGTGGCGGTGGCGCTGGTGTGGATCGTTACACTGCTTCACAAGTACCACAGTTGCCCAGGAGCTTCAGCGGCAACTCCTCCAGTTCGAACGATGATGAGGATTTGAGGCAGCTTCTAAGGACGGCGTCGTCAAAGAAGAACAACGATGCAGAGAAACGGGACAACAAGGTAGCAGGTTCAGAGATGCACAGAAGAGGAAGACCAAATGTTAGTATTAGACAACCGACAATGAATAATGCGATGGGGATGAGGAGCTACAGTGTTGGATTGAAGATGGGAAGGATTGATGAGGAAAGGGCTTCGACTTTTGAGGAAGATGAAGTCGATGTGAAGGCGGATTTTTGTACAAGAAACAGAAGTTACGGTGTTAACAAGAGAAATGCTGGGATTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

174

Amino Acids

19.36

Weight (kDa)

10.08

Isoelectric Point (pI)

62.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018434)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g02645
prunus_persica	Prupe.5G101800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0495811 RchiOBHm_Chr4g0430521
rosa_roxburghii	Rroxscaffold_2G00135420
rosa_rugosa	Rorug06G0043900 Rorug06G0044500
rosa_samantha	Rh2CG350200 Rh7AG497900 Rh7DG441500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	293
AciI	CCGC	3 cut(s)	135, 198, 464
AclWI	GGATC	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	178
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	2 cut(s)	174, 475
AgsI	TTSAA	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	3 cut(s)	192, 241, 384
AluI	AGCT	3 cut(s)	192, 241, 384
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	159
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	113, 238
AspLEI	GCGC	2 cut(s)	42, 143
AsuHPI	GGTGA	1 cut(s)	45
AsuII	TTCGAA	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	100, 250
BccI	CCATC	2 cut(s)	364, 397
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	3 cut(s)	114, 199, 239
BlsI	GCNGC	3 cut(s)	115, 200, 240
Bme1390I	CCNGG	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	3 cut(s)	27, 265, 303
BpiI	GAAGAC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	193
Bpu14I	TTCGAA	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	72, 185
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	72, 185
BseGI	GGATG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	196, 394
BseXI	GCAGC	2 cut(s)	100, 250
BseYI	CCCAGC	1 cut(s)	512
BshFI	GGCC	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	106, 151
BspACI	CCGC	3 cut(s)	135, 198, 464
BspANI	GGCC	1 cut(s)	77
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	159
BspT104I	TTCGAA	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	72, 185
BssMI	GATC	2 cut(s)	106, 151
BssNI	GRCGYC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	3 cut(s)	180, 389, 494
Bst6I	CTCTTC	1 cut(s)	316
BstACI	GRCGYC	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	473
BstBI	TTCGAA	1 cut(s)	215
BstDEI	CTNAG	2 cut(s)	21, 245
BstF5I	GGATG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	42, 143
BstKTI	GATC	2 cut(s)	109, 154
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	2 cut(s)	106, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	100, 250
BstV2I	GAAGAC	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 394
BveI	ACCTGC	1 cut(s)	293
CfoI	GCGC	2 cut(s)	42, 143
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	173, 474
CviJI	RGCY	5 cut(s)	77, 192, 241, 384, 428
CviKI_1	RGCY	5 cut(s)	77, 192, 241, 384, 428
CviQI	GTAC	2 cut(s)	173, 474
DdeI	CTNAG	2 cut(s)	21, 245
DpnI	GATC	2 cut(s)	108, 153
DpnII	GATC	2 cut(s)	106, 151
DrdI	GACNNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
EciI	GGCGGA	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaiI	YATR	4 cut(s)	47, 92, 129, 523
FaqI	GGGAC	1 cut(s)	302
Fnu4HI	GCNGC	3 cut(s)	114, 199, 239
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	3 cut(s)	114, 199, 239
GlaI	GCGC	2 cut(s)	41, 142
GluI	GCNGC	3 cut(s)	114, 199, 239
GsaI	CCCAGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	77
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	2 cut(s)	42, 143
Hin1I	GRCGYC	1 cut(s)	254
Hin6I	GCGC	2 cut(s)	40, 141
HinP1I	GCGC	2 cut(s)	40, 141
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HpaI	GTTAAC	1 cut(s)	499
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	1 cut(s)	310
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	3 cut(s)	112, 402, 454
HpyCH4III	ACNGT	3 cut(s)	180, 389, 494
HpyCH4V	TGCA	3 cut(s)	17, 278, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	2 cut(s)	21, 245
Hsp92I	GRCGYC	1 cut(s)	254
HspAI	GCGC	2 cut(s)	40, 141
KspAI	GTTAAC	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	106, 151
LmnI	GCTCC	2 cut(s)	189, 381
LpnPI	CCDG	6 cut(s)	129, 172, 199, 223, 288, 498
Lsp1109I	GCAGC	2 cut(s)	100, 250
LweI	GCATC	3 cut(s)	27, 265, 303
MaeIII	GTNAC	2 cut(s)	155, 488
MalI	GATC	2 cut(s)	108, 153
MboI	GATC	2 cut(s)	106, 151
MboII	GAAGA	7 cut(s)	42, 116, 277, 333, 339, 412, 455
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	7 cut(s)	217, 220, 228, 317, 372, 412, 433
MseI	TTAA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	198
NdeII	GATC	2 cut(s)	106, 151
NspV	TTCGAA	1 cut(s)	215
PflFI	GACNNNGTC	1 cut(s)	253
PkrI	GCNGC	3 cut(s)	115, 200, 240
Psp6I	CCWGG	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	253
RsaI	GTAC	2 cut(s)	174, 475
RsaNI	GTAC	2 cut(s)	173, 474
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	3 cut(s)	114, 199, 239
Sau3AI	GATC	2 cut(s)	106, 151
ScrFI	CCNGG	1 cut(s)	187
SetI	ASST	7 cut(s)	65, 123, 194, 243, 300, 307, 386
SfaNI	GCATC	3 cut(s)	27, 265, 303
SfcI	CTRYAG	1 cut(s)	385
SfuI	TTCGAA	1 cut(s)	215
SsiI	CCGC	3 cut(s)	135, 198, 464
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	3 cut(s)	180, 389, 494
TaqI	TCGA	3 cut(s)	215, 431, 453
TatI	WGTACW	1 cut(s)	473
TauI	GCSGC	1 cut(s)	201
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	2 cut(s)	166, 394
TseI	GCWGC	2 cut(s)	113, 238
TspDTI	ATGAA	2 cut(s)	374, 462
TspRI	CASTG	2 cut(s)	166, 394
Tth111I	GACNNNGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.