FvH4_5g05130

Aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
2996111 .. 3000055
3945 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05130.t5

Sequence Viewer

Length: 1485 bp
ATGGCAGTTCGGAGACTCTCCTCCTTACTCTCTCGCGCTCTCTCTTCTGCTTCTTCTTCTAAGCTTCTTTCTCAAGGGAGAAGTGTCAGCAGGTTTAGCAGTACTGCTGCAGCAAGTGAAGAGTTGATCACCCCACCTGTTCATATTGAACACACTAAGCTTCTAATCAATGGCCAGTTTGTTGATTCTGCATCAGGAAAAACATTTCCAACCTACGATCCTCGCACAGGAGAAGTAATTGCTCATGTGGCGGAGGGTGATGCAGAAGATATTAATCGTGCAGTAGCTGCTGCTAGAAAGGCTTTTGATGAGGGACCATGGCCCAAGATGTCCGCTTATGAAAGGTCACGGATACTATTACGATTTGCTGATTTGGTTGAGAAACACAGTGAAGAGCTTGCAGCTCTTGAGACATGGAACAATGGCAAACCTTTTGTGCAGGCTTCCCAAGCCGAATTGCCAATGGTGGTCCGTTTGTTGCACTACTATGCTGGATGGGCAGACAAAATCCATGGGCTAACTGTTCCAGCTGATGGACCTTATCATGTGCAAACGCTGCACGAACCAATCGGTGTTGCAGGACAGATTATTCCATGGAACTTTCCTCTTCTCATGTTTGTCTGGAAAGTTGGGCCTGCACTGGCATGTGGTAATACTATTGTCCTAAAAAGTGCAGAGCAGACGCCTCTCACTGCCCTCTATGTGGCAAAGCTATTCCAAGAGGCCGGTCTTCCTCCTGGTGTTTTAAATGTAGTTTCCGGTTATGGCCCAACTGCTGGTGCTGCTCTTGCCAGTCATATGGATGTGGACAAGGTAGCTTTTACTGGATCAACTGACACTGAGCTTGCACACTTTGCTCTCTTCTTTAATCAGGGGCAATGCTGCTGTGCTGGGTCTCGTACATTTGTACATGAGCATGTATATGATGAGTTTTTGGAAAAAGCAAAGGCTCGTGCTTTGAAACGTACTGTTGGTGATCCCTTCAAGAAGGGTATCGAACAAGGTCCCCAGATTGACTCAGAGCAGTTTCAGAAGGTTCTTAAATACATAAAATCTGGTGTTGAAAGTGATGCTACACTTGAATGTGGAGGTGAAAGATTTGGCTCCAAAGGCTACTTCATCCAGCCTACTGTATTCTCAAATGTCCAGGATGACATGTTGATTGCACAAGATGAGATCTTTGGCCCCGTGCAATCAATTTTGAAATTCAAGGAAATTGATGAAGTAGTACGAAGAGCTAATTCAACGCGCTTTGGACTTGCTGCTGGGGTTTTCACCAAAAACATTGACACTGCCAACACCTTGACACGGGCGTTGAGGGCTGGGACAGTGTGGGTGAATTGCTTCGATGTGTTTGATGCTGCGATTCCTTTTGGTGGCTACAAGATGAGTGGAATAGGTAGAGAAAAGGGAATCTACAGTCTTCATAACTACTTGCAGGTCAAGGCTGTTGTTACTCCTTTGAAGAATCCAGCATGGTTGTAA

Protein Analysis

495

Amino Acids

53.91

Weight (kDa)

6.9

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 1 - 413 1.2e-164 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011731)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 81, 1429
AccB7I CCANNNNNTGG 2 cut(s) 533, 776
AccII CGCG 2 cut(s) 36, 1249
AciI CCGC 2 cut(s) 251, 333
AclWI GGATC 3 cut(s) 212, 835, 971
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 1205
AcyI GRCGYC 1 cut(s) 683
AfaI GTAC 5 cut(s) 103, 901, 909, 967, 1230
AfiI CCNNNNNNNGG 6 cut(s) 227, 533, 703, 776, 1308, 1376
AflIII ACRYGT 1 cut(s) 1155
AgsI TTSAA 9 cut(s) 149, 961, 985, 1064, 1082, 1204, 1210, 1245, 1465
AjnI CCWGG 2 cut(s) 736, 1146
AjuI GAANNNNNNNTTGG 2 cut(s) 1100, 1132
Alw26I GTCTC 3 cut(s) 7, 404, 900
AlwI GGATC 3 cut(s) 212, 835, 971
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 6 cut(s) 172, 320, 632, 723, 766, 1183
ApoI RAATTY 1 cut(s) 1205
AseI ATTAAT 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 1343
AspLEI GCGC 2 cut(s) 38, 1251
AspS9I GGNCC 8 cut(s) 314, 321, 469, 536, 632, 767, 1004, 1184
AsuHPI GGTGA 6 cut(s) 121, 269, 986, 1103, 1267, 1348
AvaII GGWCC 4 cut(s) 314, 469, 536, 1004
BalI TGGCCA 1 cut(s) 174
BauI CACGAG 1 cut(s) 951
BbsI GAAGAC 2 cut(s) 722, 1415
BccI CCATC 2 cut(s) 489, 527
BciT130I CCWGG 2 cut(s) 738, 1148
BciVI GTATCC 1 cut(s) 345
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 3 cut(s) 7, 404, 900
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 2 cut(s) 108, 1417
BfuAI ACCTGC 2 cut(s) 81, 1429
BfuI GTATCC 1 cut(s) 345
BglII AGATCT 1 cut(s) 1176
BmcAI AGTACT 1 cut(s) 103
Bme1390I CCNGG 2 cut(s) 738, 1148
Bme18I GGWCC 4 cut(s) 314, 469, 536, 1004
BmgT120I GGNCC 8 cut(s) 314, 321, 469, 536, 632, 767, 1004, 1184
BmiI GGNNCC 4 cut(s) 315, 1006, 1105, 1186
BmrFI CCNGG 2 cut(s) 738, 1148
BmsI GCATC 4 cut(s) 200, 250, 1060, 1348
BpiI GAAGAC 2 cut(s) 722, 1415
BpuEI CTTGAG 2 cut(s) 57, 428
BsaBI GATNNNNATC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 3 cut(s) 317, 511, 593
BsaWI WCCGGW 1 cut(s) 758
Bsc4I CCNNNNNNNGG 6 cut(s) 227, 533, 703, 776, 1308, 1376
Bse118I RCCGGY 1 cut(s) 725
Bse1I ACTGG 4 cut(s) 175, 645, 792, 829
Bse3DI GCAATG 1 cut(s) 884
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 2 cut(s) 738, 1148
BseDI CCNNGG 3 cut(s) 317, 511, 593
BseGI GGATG 4 cut(s) 500, 808, 1119, 1156
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 6 cut(s) 227, 533, 703, 776, 1308, 1376
BseMI GCAATG 1 cut(s) 884
BseMII CTCAG 2 cut(s) 831, 1032
BseNI ACTGG 4 cut(s) 175, 645, 792, 829
BseRI GAGGAG 1 cut(s) 10
BseYI CCCAGC 3 cut(s) 890, 1265, 1322
BsgI GTGCAG 5 cut(s) 300, 458, 542, 621, 693
Bsh1236I CGCG 2 cut(s) 36, 1249
BshFI GGCC 6 cut(s) 174, 322, 634, 725, 768, 1185
BsiSI CCGG 2 cut(s) 726, 759
BslFI GGGAC 3 cut(s) 327, 990, 1339
BslI CCNNNNNNNGG 6 cut(s) 227, 533, 703, 776, 1308, 1376
BsmAI GTCTC 3 cut(s) 7, 404, 900
BsmFI GGGAC 3 cut(s) 327, 990, 1339
BsnI GGCC 6 cut(s) 174, 322, 634, 725, 768, 1185
Bso31I GGTCTC 1 cut(s) 900
Bsp1407I TGTACA 1 cut(s) 907
Bsp143I GATC 5 cut(s) 126, 217, 827, 976, 1176
Bsp19I CCATGG 3 cut(s) 317, 511, 593
BspACI CCGC 2 cut(s) 251, 333
BspANI GGCC 6 cut(s) 174, 322, 634, 725, 768, 1185
BspCNI CTCAG 2 cut(s) 832, 1031
BspFNI CGCG 2 cut(s) 36, 1249
BspLI GGNNCC 4 cut(s) 315, 1006, 1105, 1186
BspMAI CTGCAG 1 cut(s) 112
BspMI ACCTGC 2 cut(s) 81, 1429
BspPI GGATC 3 cut(s) 212, 835, 971
BspQI GCTCTTC 2 cut(s) 387, 1228
BspTNI GGTCTC 1 cut(s) 900
BsrDI GCAATG 1 cut(s) 884
BsrFI RCCGGY 1 cut(s) 725
BsrGI TGTACA 1 cut(s) 907
BsrI ACTGG 4 cut(s) 175, 645, 792, 829
BssAI RCCGGY 1 cut(s) 725
BssECI CCNNGG 3 cut(s) 317, 511, 593
BssMI GATC 5 cut(s) 126, 217, 827, 976, 1176
BssNI GRCGYC 1 cut(s) 683
BssSI CACGAG 1 cut(s) 951
BssT1I CCWWGG 3 cut(s) 317, 511, 593
Bst2BI CACGAG 1 cut(s) 951
Bst2UI CCWGG 2 cut(s) 738, 1148
Bst4CI ACNGT 6 cut(s) 389, 523, 970, 1132, 1330, 1421
Bst6I CTCTTC 6 cut(s) 49, 114, 387, 612, 866, 1228
BstACI GRCGYC 1 cut(s) 683
BstAPI GCANNNNNTGC 3 cut(s) 287, 556, 854
BstAUI TGTACA 1 cut(s) 907
BstC8I GCNNGC 4 cut(s) 399, 441, 636, 846
BstDEI CTNAG 4 cut(s) 60, 156, 840, 1018
BstDSI CCRYGG 3 cut(s) 317, 511, 593
BstENI CCTNNNNNAGG 1 cut(s) 225
BstF5I GGATG 4 cut(s) 500, 808, 1119, 1156
BstFNI CGCG 2 cut(s) 36, 1249
BstHHI GCGC 2 cut(s) 38, 1251
BstKTI GATC 5 cut(s) 129, 220, 830, 979, 1179
BstMAI GTCTC 3 cut(s) 7, 404, 900
BstMBI GATC 5 cut(s) 126, 217, 827, 976, 1176
BstNI CCWGG 2 cut(s) 738, 1148
BstNSI RCATGY 3 cut(s) 648, 920, 1159
BstSCI CCNGG 2 cut(s) 736, 1146
BstSFI CTRYAG 2 cut(s) 108, 1417
BstUI CGCG 2 cut(s) 36, 1249
BstV2I GAAGAC 2 cut(s) 722, 1415
BstX2I RGATCY 1 cut(s) 1176
BstXI CCANNNNNNTGG 1 cut(s) 799
BstYI RGATCY 1 cut(s) 1176
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 6 cut(s) 174, 322, 634, 725, 768, 1185
BtgI CCRYGG 3 cut(s) 317, 511, 593
BtsCI GGATG 4 cut(s) 500, 808, 1119, 1156
BtsI GCAGTG 2 cut(s) 690, 1290
BtsIMutI CAGTG 6 cut(s) 394, 638, 690, 837, 1290, 1335
BveI ACCTGC 2 cut(s) 81, 1429
Cac8I GCNNGC 4 cut(s) 399, 441, 636, 846
CaiI CAGNNNCTG 1 cut(s) 287
CfoI GCGC 2 cut(s) 38, 1251
Cfr10I RCCGGY 1 cut(s) 725
Cfr13I GGNCC 8 cut(s) 314, 321, 469, 536, 632, 767, 1004, 1184
CseI GACGC 1 cut(s) 691
Csp6I GTAC 5 cut(s) 102, 900, 908, 966, 1229
CspCI CAANNNNNGTGG 2 cut(s) 1372, 1407
CviQI GTAC 5 cut(s) 102, 900, 908, 966, 1229
DdeI CTNAG 4 cut(s) 60, 156, 840, 1018
DpnI GATC 5 cut(s) 128, 219, 829, 978, 1178
DpnII GATC 5 cut(s) 126, 217, 827, 976, 1176
DraI TTTAAA 1 cut(s) 747
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 6 cut(s) 49, 114, 387, 612, 866, 1228
EarI CTCTTC 6 cut(s) 49, 114, 387, 612, 866, 1228
EciI GGCGGA 1 cut(s) 266
Eco130I CCWWGG 3 cut(s) 317, 511, 593
Eco31I GGTCTC 1 cut(s) 900
Eco47I GGWCC 4 cut(s) 314, 469, 536, 1004
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 1004
EcoRII CCWGG 2 cut(s) 736, 1146
EcoT14I CCWWGG 3 cut(s) 317, 511, 593
ErhI CCWWGG 3 cut(s) 317, 511, 593
FaqI GGGAC 3 cut(s) 327, 990, 1339
FauNDI CATATG 1 cut(s) 798
FbaI TGATCA 1 cut(s) 126
FokI GGATG 4 cut(s) 507, 815, 1106, 1163
FspBI CTAG 1 cut(s) 294
GlaI GCGC 2 cut(s) 37, 1250
GsaI CCCAGC 3 cut(s) 894, 1269, 1326
HaeIII GGCC 6 cut(s) 174, 322, 634, 725, 768, 1185
HapII CCGG 2 cut(s) 726, 759
HgaI GACGC 1 cut(s) 691
HhaI GCGC 2 cut(s) 38, 1251
Hin1I GRCGYC 1 cut(s) 683
Hin6I GCGC 2 cut(s) 36, 1249
HinP1I GCGC 2 cut(s) 36, 1249
HindIII AAGCTT 2 cut(s) 62, 158
HinfI GANTC 6 cut(s) 15, 185, 1016, 1366, 1413, 1468
HpaII CCGG 2 cut(s) 726, 759
HphI GGTGA 6 cut(s) 121, 269, 986, 1103, 1267, 1348
Hpy166II GTNNAC 1 cut(s) 808
Hpy188I TCNGA 3 cut(s) 12, 1021, 1032
Hpy188III TCNNGA 4 cut(s) 195, 407, 622, 985
Hpy8I GTNNAC 1 cut(s) 808
HpyAV CCTTC 3 cut(s) 982, 991, 1027
HpyCH4III ACNGT 6 cut(s) 389, 523, 970, 1132, 1330, 1421
HpyCH4IV ACGT 1 cut(s) 964
HpyF3I CTNAG 4 cut(s) 60, 156, 840, 1018
HpySE526I ACGT 1 cut(s) 964
Hsp92I GRCGYC 1 cut(s) 683
HspAI GCGC 2 cut(s) 36, 1249
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 5 cut(s) 126, 217, 827, 976, 1176
LguI GCTCTTC 2 cut(s) 387, 1228
LmnI GCTCC 1 cut(s) 1109
LweI GCATC 4 cut(s) 200, 250, 1060, 1348
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 964
MaeIII GTNAC 2 cut(s) 345, 1453
MalI GATC 5 cut(s) 128, 219, 829, 978, 1178
MboI GATC 5 cut(s) 126, 217, 827, 976, 1176
MflI RGATCY 1 cut(s) 1176
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 7 cut(s) 237, 455, 1197, 1205, 1215, 1240, 1339
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 2 cut(s) 9, 1010
MmeI TCCRAC 1 cut(s) 233
Mox20I TGGCCA 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 1343
MscI TGGCCA 1 cut(s) 174
MseI TTAA 4 cut(s) 273, 746, 867, 1041
MslI CAYNNNNRTG 6 cut(s) 486, 643, 801, 915, 921, 1081
Msp20I TGGCCA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 2 cut(s) 726, 759
MspR9I CCNGG 2 cut(s) 738, 1148
MvaI CCWGG 2 cut(s) 738, 1148
MvnI CGCG 2 cut(s) 36, 1249
NcoI CCATGG 3 cut(s) 317, 511, 593
NdeI CATATG 1 cut(s) 798
NdeII GATC 5 cut(s) 126, 217, 827, 976, 1176
NlaIV GGNNCC 4 cut(s) 315, 1006, 1105, 1186
NmuCI GTSAC 1 cut(s) 345
NspI RCATGY 3 cut(s) 648, 920, 1159
PciI ACATGT 1 cut(s) 1155
PciSI GCTCTTC 2 cut(s) 387, 1228
PdmI GAANNNNTTC 1 cut(s) 1343
PfeI GAWTC 4 cut(s) 185, 1366, 1413, 1468
PflMI CCANNNNNTGG 2 cut(s) 533, 776
PfoI TCCNGGA 1 cut(s) 1146
PleI GAGTC 2 cut(s) 9, 1010
PpsI GAGTC 2 cut(s) 9, 1010
PpuMI RGGWCCY 1 cut(s) 1004
PscI ACATGT 1 cut(s) 1155
PshBI ATTAAT 1 cut(s) 273
Psp5II RGGWCCY 1 cut(s) 1004
Psp6I CCWGG 2 cut(s) 736, 1146
PspFI CCCAGC 3 cut(s) 890, 1265, 1322
PspGI CCWGG 2 cut(s) 736, 1146
PspN4I GGNNCC 4 cut(s) 315, 1006, 1105, 1186
PspPI GGNCC 8 cut(s) 314, 321, 469, 536, 632, 767, 1004, 1184
PspPPI RGGWCCY 1 cut(s) 1004
PstI CTGCAG 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 1176
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 5 cut(s) 103, 901, 909, 967, 1230
RsaNI GTAC 5 cut(s) 102, 900, 908, 966, 1229
RseI CAYNNNNRTG 6 cut(s) 486, 643, 801, 915, 921, 1081
SapI GCTCTTC 2 cut(s) 387, 1228
SaqAI TTAA 4 cut(s) 273, 746, 867, 1041
Sau3AI GATC 5 cut(s) 126, 217, 827, 976, 1176
Sau96I GGNCC 8 cut(s) 314, 321, 469, 536, 632, 767, 1004, 1184
ScaI AGTACT 1 cut(s) 103
SchI GAGTC 2 cut(s) 9, 1010
ScrFI CCNGG 2 cut(s) 738, 1148
SfaNI GCATC 4 cut(s) 200, 250, 1060, 1348
SfcI CTRYAG 2 cut(s) 108, 1417
SinI GGWCC 4 cut(s) 314, 469, 536, 1004
SmiMI CAYNNNNRTG 6 cut(s) 486, 643, 801, 915, 921, 1081
SmlI CTYRAG 2 cut(s) 72, 407
SmoI CTYRAG 2 cut(s) 72, 407
Sse9I AATT 7 cut(s) 237, 455, 1197, 1205, 1215, 1240, 1339
SsiI CCGC 2 cut(s) 251, 333
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 736, 1146
StyI CCWWGG 3 cut(s) 317, 511, 593
TaaI ACNGT 6 cut(s) 389, 523, 970, 1132, 1330, 1421
TaiI ACGT 1 cut(s) 967
TaqI TCGA 2 cut(s) 996, 1347
TasI AATT 7 cut(s) 237, 455, 1197, 1205, 1215, 1240, 1339
TatI WGTACW 2 cut(s) 101, 907
TfiI GAWTC 4 cut(s) 185, 1366, 1413, 1468
Tru1I TTAA 4 cut(s) 273, 746, 867, 1041
Tru9I TTAA 4 cut(s) 273, 746, 867, 1041
TscAI CASTG 6 cut(s) 394, 645, 697, 844, 1297, 1335
TseFI GTSAC 1 cut(s) 345
Tsp45I GTSAC 1 cut(s) 345
TspDTI ATGAA 5 cut(s) 131, 354, 1108, 1236, 1415
TspGWI ACGGA 2 cut(s) 364, 461
TspRI CASTG 6 cut(s) 394, 645, 697, 844, 1297, 1335
Van91I CCANNNNNTGG 2 cut(s) 533, 776
VpaK11BI GGWCC 4 cut(s) 314, 469, 536, 1004
VspI ATTAAT 1 cut(s) 273
XagI CCTNNNNNAGG 1 cut(s) 225
XapI RAATTY 1 cut(s) 1205
XceI RCATGY 3 cut(s) 648, 920, 1159
XmnI GAANNNNTTC 1 cut(s) 1343
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.