RchiOBHm_Chr7g0193841

Aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
12100114 .. 12103896
3783 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17335

Sequence Viewer

Length: 1596 bp
ATGGCAGCTCGGAGACTCTCCTCCTTACTCTCTCGCTCTCTCTCTTCTGGGTCTGCTTCTAAGCTTCTCTCTCAAGGGAGAAGTGTCAGCAGGTTTAGCACTGCTGCAGCAAGTGAAGAGTTGATCACCCCACCTGTTCATATTGAATATACTAAGCATCTAATCAATGGCCAATTTGTTGATTCTGCATCAGGAAAAACATTTCCAACCTACGATCCTCGCACCGCAGAAGTGATTGCTCATGTGGCGGAGGGTGATGCAGAAGATATCGATCGTGCAGTGGCTGCTGCTCGAAAGGCTTTTGATGAGGGACCATGGCCAAAAATGTCCGCTTATGAAAGGTCGCGGATATTATTACGATTTGCTGATTTGGTTGAGAAACACAGTGACGAGCTTGCAGCTCTTGAGACTTGGAACAATGGCAAGCCTTTTGAGCAGGCTGCCCATTCCGAATTGCCAATGTTGGTTCGTTTGTTTCGCTACTATGCTGGATGGGCAGACAAAATCCATGGGCTAACTGTTCCAGCGGATGGACCTTATCATGTGCAAACGCTGCATGAACCAATCGGTGTTGCAGGACAGATTATTCCATGGAACTTTCCTCTGCTCATGTTTACGTGGAAAGTTGGGCCTGCACTGGCTTGTGGTAATACTATTGTCCTAAAAACTGCAGAGCAGACGCCTCTCACTGCCCTCTATGTGGCAAAGCTATTCCAAGAGGCTGGTCTTCCTCCTGGTGTTCTAAATATAGTTTCAGGTTATGGGCCGACTGCTGGTGCTGCTCTTGCCAGTCATATGGATGTGGACAAGGTAGCTTTCACCGGATCAACTGACACTGGTAAGATTATTCTTGAACTGGCTGCAAAAAGCAATCTTAAGCCAGCAACATTAGAGCTCGGAGGGAAATCACCTTTCATAATATGCGAGGATGCTGACATTGATCGGGCCGTAGAGCTTGCACACTTTGCTCTCTTCTTTAATCAGGGGCAATGCTGCTGTGCTGGGTCTCGTACTTTTGTACATGAGCGTGTATATGATGAGTTTTTGGAAAAAGCAAAGGCTCGTGCTTTGAAACGCATCGTTGGTGATCCCTTCAAGAAGGGTGTCGAACAAGGTCCCCAGATTGACTCAGAGCAGTTTCAGAAGGTTCTTAGATACATAAAATCTGGCATTGAAAGCACTGCTACCCTTGAATGTGGAGGTGAAAGATTTGGCTCCAAGGGCTACTTCATCCAGCCTACTGTATTCTCAAATGTCCAGGATGACATGTTGATAGCACAAGATGAGATCTTTGGCCCAGTGCAATCAATTCTGAAATTCAAGGAGCTTGATGAAGTAGTACGAAGAGCTAATGCAACGCGCTATGGTCTTGCTGCTGGGGTTTTCACCAGGAACATCGACACTGCCAATACATTGACACGGGCGTTGAGGGCTGGGACAGTGTGGGTGAATTGCTTCGATGTGTTTGATGCTGCGATTCCTTTTGGTGGCTACAAGATGAGTGGGATAGGTAGAGAAAAGGGAATATACAGTCTTCATAACTATTTGCAGGTCAAGGCTGTTGTTACTCCTTTGAAGAATCCGGCATGGTTGTAA

Protein Analysis

531

Amino Acids

58.04

Weight (kDa)

6.88

Isoelectric Point (pI)

35.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 59 - 521 6.2e-181 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011731)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 81, 1540
AccB7I CCANNNNNTGG 1 cut(s) 530
AccII CGCG 2 cut(s) 346, 1360
AciI CCGC 5 cut(s) 225, 248, 330, 346, 527
AclWI GGATC 3 cut(s) 209, 832, 1082
AcoI YGGCCR 2 cut(s) 169, 317
AcsI RAATTY 1 cut(s) 1316
AcyI GRCGYC 1 cut(s) 680
AfaI GTAC 3 cut(s) 1012, 1020, 1341
AfiI CCNNNNNNNGG 4 cut(s) 530, 700, 773, 1487
AflII CTTAAG 1 cut(s) 875
AflIII ACRYGT 1 cut(s) 1266
AgsI TTSAA 8 cut(s) 146, 854, 1072, 1096, 1175, 1193, 1321, 1576
AjnI CCWGG 3 cut(s) 733, 1257, 1388
AjuI GAANNNNNNNTTGG 2 cut(s) 1211, 1243
Alw21I GWGCWC 1 cut(s) 897
Alw26I GTCTC 3 cut(s) 7, 401, 1011
AlwI GGATC 3 cut(s) 209, 832, 1082
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 6 cut(s) 169, 317, 629, 764, 945, 1294
ApoI RAATTY 1 cut(s) 1316
Asp700I GAANNNNTTC 1 cut(s) 1454
AspLEI GCGC 1 cut(s) 1362
AspS9I GGNCC 7 cut(s) 311, 533, 629, 764, 945, 1115, 1295
AsuHPI GGTGA 8 cut(s) 118, 266, 811, 900, 1097, 1214, 1378, 1459
AvaII GGWCC 3 cut(s) 311, 533, 1115
BalI TGGCCA 2 cut(s) 171, 319
BanII GRGCYC 1 cut(s) 897
BauI CACGAG 1 cut(s) 1062
BbsI GAAGAC 2 cut(s) 719, 1526
Bbv12I GWGCWC 1 cut(s) 897
BccI CCATC 2 cut(s) 486, 524
BceAI ACGGC 1 cut(s) 932
BciT130I CCWGG 3 cut(s) 735, 1259, 1390
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 3 cut(s) 7, 401, 1011
BfmI CTRYAG 2 cut(s) 105, 669
BfrI CTTAAG 1 cut(s) 875
BfuAI ACCTGC 2 cut(s) 81, 1540
BglII AGATCT 1 cut(s) 1287
Bme1390I CCNGG 3 cut(s) 735, 1259, 1390
Bme18I GGWCC 3 cut(s) 311, 533, 1115
BmgT120I GGNCC 7 cut(s) 311, 533, 629, 764, 945, 1115, 1295
BmiI GGNNCC 3 cut(s) 312, 1117, 1216
BmrFI CCNGG 3 cut(s) 735, 1259, 1390
BmrI ACTGGG 1 cut(s) 1292
BmsI GCATC 6 cut(s) 166, 197, 247, 919, 1086, 1459
BmuI ACTGGG 1 cut(s) 1292
BpiI GAAGAC 2 cut(s) 719, 1526
BpuEI CTTGAG 2 cut(s) 57, 425
Bsa29I ATCGAT 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 618
BsaBI GATNNNNATC 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 680
BsaI GGTCTC 1 cut(s) 1011
BsaJI CCNNGG 4 cut(s) 314, 508, 590, 1218
BsaWI WCCGGW 1 cut(s) 821
Bsc4I CCNNNNNNNGG 4 cut(s) 530, 700, 773, 1487
Bse1I ACTGG 5 cut(s) 642, 789, 841, 861, 1298
Bse3DI GCAATG 1 cut(s) 995
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 3 cut(s) 735, 1259, 1390
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 4 cut(s) 314, 508, 590, 1218
BseGI GGATG 6 cut(s) 497, 535, 805, 934, 1230, 1267
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 4 cut(s) 530, 700, 773, 1487
BseMI GCAATG 1 cut(s) 995
BseMII CTCAG 1 cut(s) 1143
BseNI ACTGG 5 cut(s) 642, 789, 841, 861, 1298
BseRI GAGGAG 1 cut(s) 10
BseYI CCCAGC 3 cut(s) 1001, 1376, 1433
BsgI GTGCAG 2 cut(s) 297, 618
Bsh1236I CGCG 2 cut(s) 346, 1360
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 6 cut(s) 171, 319, 631, 766, 947, 1296
BshVI ATCGAT 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 897
BsiSI CCGG 2 cut(s) 822, 1583
BslFI GGGAC 3 cut(s) 324, 1101, 1450
BslI CCNNNNNNNGG 4 cut(s) 530, 700, 773, 1487
BsmAI GTCTC 3 cut(s) 7, 401, 1011
BsmFI GGGAC 3 cut(s) 324, 1101, 1450
BsnI GGCC 6 cut(s) 171, 319, 631, 766, 947, 1296
Bso31I GGTCTC 1 cut(s) 1011
Bsp1286I GDGCHC 1 cut(s) 897
Bsp1407I TGTACA 1 cut(s) 1018
Bsp143I GATC 7 cut(s) 123, 214, 271, 824, 940, 1087, 1287
Bsp19I CCATGG 3 cut(s) 314, 508, 590
BspACI CCGC 5 cut(s) 225, 248, 330, 346, 527
BspANI GGCC 6 cut(s) 171, 319, 631, 766, 947, 1296
BspCNI CTCAG 1 cut(s) 1142
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 2 cut(s) 346, 1360
BspLI GGNNCC 3 cut(s) 312, 1117, 1216
BspMAI CTGCAG 2 cut(s) 109, 673
BspMI ACCTGC 2 cut(s) 81, 1540
BspPI GGATC 3 cut(s) 209, 832, 1082
BspQI GCTCTTC 1 cut(s) 1339
BspTI CTTAAG 1 cut(s) 875
BspTNI GGTCTC 1 cut(s) 1011
BsrDI GCAATG 1 cut(s) 995
BsrGI TGTACA 1 cut(s) 1018
BsrI ACTGG 5 cut(s) 642, 789, 841, 861, 1298
BssECI CCNNGG 4 cut(s) 314, 508, 590, 1218
BssMI GATC 7 cut(s) 123, 214, 271, 824, 940, 1087, 1287
BssNI GRCGYC 1 cut(s) 680
BssSI CACGAG 1 cut(s) 1062
BssT1I CCWWGG 4 cut(s) 314, 508, 590, 1218
Bst2BI CACGAG 1 cut(s) 1062
Bst2UI CCWGG 3 cut(s) 735, 1259, 1390
Bst4CI ACNGT 5 cut(s) 386, 520, 1243, 1441, 1532
Bst6I CTCTTC 4 cut(s) 49, 111, 977, 1339
BstACI GRCGYC 1 cut(s) 680
BstAFI CTTAAG 1 cut(s) 875
BstAPI GCANNNNNTGC 3 cut(s) 284, 553, 965
BstAUI TGTACA 1 cut(s) 1018
BstBAI YACGTR 1 cut(s) 618
BstC8I GCNNGC 6 cut(s) 396, 425, 438, 633, 882, 957
BstDEI CTNAG 4 cut(s) 60, 153, 1129, 1151
BstDSI CCRYGG 3 cut(s) 314, 508, 590
BstF5I GGATG 6 cut(s) 497, 535, 805, 934, 1230, 1267
BstFNI CGCG 2 cut(s) 346, 1360
BstHHI GCGC 1 cut(s) 1362
BstKTI GATC 7 cut(s) 126, 217, 274, 827, 943, 1090, 1290
BstMAI GTCTC 3 cut(s) 7, 401, 1011
BstMBI GATC 7 cut(s) 123, 214, 271, 824, 940, 1087, 1287
BstMCI CGRYCG 1 cut(s) 274
BstNI CCWGG 3 cut(s) 735, 1259, 1390
BstNSI RCATGY 1 cut(s) 1270
BstSCI CCNGG 3 cut(s) 733, 1257, 1388
BstSFI CTRYAG 2 cut(s) 105, 669
BstUI CGCG 2 cut(s) 346, 1360
BstV2I GAAGAC 2 cut(s) 719, 1526
BstX2I RGATCY 1 cut(s) 1287
BstXI CCANNNNNNTGG 2 cut(s) 722, 796
BstYI RGATCY 1 cut(s) 1287
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 6 cut(s) 171, 319, 631, 766, 947, 1296
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 3 cut(s) 314, 508, 590
BtsCI GGATG 6 cut(s) 497, 535, 805, 934, 1230, 1267
BtsI GCAGTG 5 cut(s) 99, 285, 687, 1179, 1401
BveI ACCTGC 2 cut(s) 81, 1540
Cac8I GCNNGC 6 cut(s) 396, 425, 438, 633, 882, 957
CaiI CAGNNNCTG 1 cut(s) 284
CfoI GCGC 1 cut(s) 1362
Cfr13I GGNCC 7 cut(s) 311, 533, 629, 764, 945, 1115, 1295
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 1 cut(s) 688
Csp6I GTAC 3 cut(s) 1011, 1019, 1340
CspCI CAANNNNNGTGG 2 cut(s) 1483, 1518
CviQI GTAC 3 cut(s) 1011, 1019, 1340
DdeI CTNAG 4 cut(s) 60, 153, 1129, 1151
DpnI GATC 7 cut(s) 125, 216, 273, 826, 942, 1089, 1289
DpnII GATC 7 cut(s) 123, 214, 271, 824, 940, 1087, 1287
EaeI YGGCCR 2 cut(s) 169, 317
Eam1104I CTCTTC 4 cut(s) 49, 111, 977, 1339
EarI CTCTTC 4 cut(s) 49, 111, 977, 1339
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 895
Eco130I CCWWGG 4 cut(s) 314, 508, 590, 1218
Eco24I GRGCYC 1 cut(s) 897
Eco31I GGTCTC 1 cut(s) 1011
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 3 cut(s) 311, 533, 1115
Eco53kI GAGCTC 1 cut(s) 895
EcoICRI GAGCTC 1 cut(s) 895
EcoO109I RGGNCCY 1 cut(s) 1115
EcoRII CCWGG 3 cut(s) 733, 1257, 1388
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 4 cut(s) 314, 508, 590, 1218
EcoT38I GRGCYC 1 cut(s) 897
ErhI CCWWGG 4 cut(s) 314, 508, 590, 1218
FalI AAGNNNNNCTT 2 cut(s) 1211, 1243
FaqI GGGAC 3 cut(s) 324, 1101, 1450
FauNDI CATATG 1 cut(s) 795
FbaI TGATCA 1 cut(s) 123
FokI GGATG 6 cut(s) 504, 542, 812, 941, 1217, 1274
FriOI GRGCYC 1 cut(s) 897
GlaI GCGC 1 cut(s) 1361
GsaI CCCAGC 3 cut(s) 1005, 1380, 1437
HaeIII GGCC 6 cut(s) 171, 319, 631, 766, 947, 1296
HapII CCGG 2 cut(s) 822, 1583
HgaI GACGC 1 cut(s) 688
HhaI GCGC 1 cut(s) 1362
Hin1I GRCGYC 1 cut(s) 680
Hin6I GCGC 1 cut(s) 1360
HinP1I GCGC 1 cut(s) 1360
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 5 cut(s) 15, 182, 1127, 1477, 1579
HpaII CCGG 2 cut(s) 822, 1583
HphI GGTGA 8 cut(s) 118, 266, 811, 900, 1097, 1214, 1378, 1459
Hpy166II GTNNAC 2 cut(s) 615, 805
Hpy188I TCNGA 6 cut(s) 12, 451, 899, 1132, 1143, 1314
Hpy188III TCNNGA 4 cut(s) 192, 404, 851, 1096
Hpy8I GTNNAC 2 cut(s) 615, 805
HpyAV CCTTC 3 cut(s) 1093, 1102, 1138
HpyCH4III ACNGT 5 cut(s) 386, 520, 1243, 1441, 1532
HpyCH4IV ACGT 1 cut(s) 617
HpyF3I CTNAG 4 cut(s) 60, 153, 1129, 1151
HpySE526I ACGT 1 cut(s) 617
Hsp92I GRCGYC 1 cut(s) 680
HspAI GCGC 1 cut(s) 1360
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 7 cut(s) 123, 214, 271, 824, 940, 1087, 1287
LguI GCTCTTC 1 cut(s) 1339
LmnI GCTCC 2 cut(s) 1220, 1324
LweI GCATC 6 cut(s) 166, 197, 247, 919, 1086, 1459
MaeII ACGT 1 cut(s) 617
MaeIII GTNAC 2 cut(s) 386, 1564
MalI GATC 7 cut(s) 125, 216, 273, 826, 942, 1089, 1289
MboI GATC 7 cut(s) 123, 214, 271, 824, 940, 1087, 1287
MboII GAAGA 8 cut(s) 36, 128, 275, 719, 964, 1356, 1526, 1588
MflI RGATCY 1 cut(s) 1287
MhlI GDGCHC 1 cut(s) 897
MlsI TGGCCA 2 cut(s) 171, 319
MluCI AATT 5 cut(s) 173, 452, 1308, 1316, 1450
MluNI TGGCCA 2 cut(s) 171, 319
MlyI GAGTC 2 cut(s) 9, 1121
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 2 cut(s) 171, 319
MroXI GAANNNNTTC 1 cut(s) 1454
MscI TGGCCA 2 cut(s) 171, 319
MseI TTAA 2 cut(s) 876, 978
MslI CAYNNNNRTG 2 cut(s) 798, 1026
Msp20I TGGCCA 2 cut(s) 171, 319
MspA1I CMGCKG 1 cut(s) 527
MspCI CTTAAG 1 cut(s) 875
MspI CCGG 2 cut(s) 822, 1583
MspR9I CCNGG 3 cut(s) 735, 1259, 1390
MvaI CCWGG 3 cut(s) 735, 1259, 1390
MvnI CGCG 2 cut(s) 346, 1360
NcoI CCATGG 3 cut(s) 314, 508, 590
NdeI CATATG 1 cut(s) 795
NdeII GATC 7 cut(s) 123, 214, 271, 824, 940, 1087, 1287
NlaIV GGNNCC 3 cut(s) 312, 1117, 1216
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 1 cut(s) 1270
PciI ACATGT 1 cut(s) 1266
PciSI GCTCTTC 1 cut(s) 1339
PdmI GAANNNNTTC 1 cut(s) 1454
PfeI GAWTC 3 cut(s) 182, 1477, 1579
PflMI CCANNNNNTGG 1 cut(s) 530
PfoI TCCNGGA 1 cut(s) 1257
Ple19I CGATCG 1 cut(s) 274
PleI GAGTC 2 cut(s) 9, 1121
PpsI GAGTC 2 cut(s) 9, 1121
Ppu21I YACGTR 1 cut(s) 618
PpuMI RGGWCCY 1 cut(s) 1115
PscI ACATGT 1 cut(s) 1266
Psp124BI GAGCTC 1 cut(s) 897
Psp5II RGGWCCY 1 cut(s) 1115
Psp6I CCWGG 3 cut(s) 733, 1257, 1388
PspFI CCCAGC 3 cut(s) 1001, 1376, 1433
PspGI CCWGG 3 cut(s) 733, 1257, 1388
PspN4I GGNNCC 3 cut(s) 312, 1117, 1216
PspPI GGNCC 7 cut(s) 311, 533, 629, 764, 945, 1115, 1295
PspPPI RGGWCCY 1 cut(s) 1115
PstI CTGCAG 2 cut(s) 109, 673
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 1287
PvuI CGATCG 1 cut(s) 274
RsaI GTAC 3 cut(s) 1012, 1020, 1341
RsaNI GTAC 3 cut(s) 1011, 1019, 1340
RseI CAYNNNNRTG 2 cut(s) 798, 1026
SacI GAGCTC 1 cut(s) 897
SapI GCTCTTC 1 cut(s) 1339
SaqAI TTAA 2 cut(s) 876, 978
Sau3AI GATC 7 cut(s) 123, 214, 271, 824, 940, 1087, 1287
Sau96I GGNCC 7 cut(s) 311, 533, 629, 764, 945, 1115, 1295
SchI GAGTC 2 cut(s) 9, 1121
ScrFI CCNGG 3 cut(s) 735, 1259, 1390
SduI GDGCHC 1 cut(s) 897
SfaNI GCATC 6 cut(s) 166, 197, 247, 919, 1086, 1459
SfcI CTRYAG 2 cut(s) 105, 669
SinI GGWCC 3 cut(s) 311, 533, 1115
SmiMI CAYNNNNRTG 2 cut(s) 798, 1026
SmlI CTYRAG 3 cut(s) 72, 404, 875
SmoI CTYRAG 3 cut(s) 72, 404, 875
Sse9I AATT 5 cut(s) 173, 452, 1308, 1316, 1450
SsiI CCGC 5 cut(s) 225, 248, 330, 346, 527
SstI GAGCTC 1 cut(s) 897
StyD4I CCNGG 3 cut(s) 733, 1257, 1388
StyI CCWWGG 4 cut(s) 314, 508, 590, 1218
TaaI ACNGT 5 cut(s) 386, 520, 1243, 1441, 1532
TaiI ACGT 1 cut(s) 620
TaqI TCGA 5 cut(s) 270, 292, 1107, 1398, 1458
TasI AATT 5 cut(s) 173, 452, 1308, 1316, 1450
TatI WGTACW 1 cut(s) 1018
TfiI GAWTC 3 cut(s) 182, 1477, 1579
Tru1I TTAA 2 cut(s) 876, 978
Tru9I TTAA 2 cut(s) 876, 978
TseFI GTSAC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 7 cut(s) 128, 351, 573, 904, 1219, 1347, 1526
Van91I CCANNNNNTGG 1 cut(s) 530
Vha464I CTTAAG 1 cut(s) 875
VpaK11BI GGWCC 3 cut(s) 311, 533, 1115
XapI RAATTY 1 cut(s) 1316
XceI RCATGY 1 cut(s) 1270
XmnI GAANNNNTTC 1 cut(s) 1454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.