FvH4_5g10191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0019234
Physical Location & Seq
Reverse (-)
5829390 .. 5832491
3102 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10191.t1

Sequence Viewer

Length: 333 bp
ATGAGGTTCAAGGCTTTCAGATGGCTTAAGGCCTTGTGGCCGACTCGGAGATCAAGTCGGCTTCACCCAATCGGTGATGGTGCGGTAACAAATTTCATTACCATGAATTGCTTTGACATGGATGCAGATGATGGTCCCGTTCCTTTTCCCTCCAGAACGAATGAGTGTGTTGATTTGAACTCTGACCATGTTCAGAGAATGAGAATCATCGTTTCCCAGCTGCCTTGGTTTCTCTTTATTCCTGTAAATCACATTCTGGAAAGTTCATTTGGGGCTCCACAGCCGACCCTTTTTGATTCTCATCGACCCCAGCTCTTTCAAGTGCTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.75

Weight (kDa)

7.9

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019234)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g10191 FvH4_5g10192
prunus_persica Prupe.5G137000_v2.0.a1
rosa_multiflora Rmu_ssc0000422.1_g000017
rosa_samantha Rh7AG092000 Rh7BG093600 Rh7CG092900 Rh7DG094100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 91
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 3 cut(s) 10, 178, 320
AjuI GAANNNNNNNTTGG 2 cut(s) 252, 284
AluBI AGCT 2 cut(s) 220, 313
AluI AGCT 2 cut(s) 220, 313
AoxI GGCC 2 cut(s) 30, 38
ApeKI GCWGC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 56, 86
AvaII GGWCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 207
BccI CCATC 3 cut(s) 15, 71, 125
BfrI CTTAAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 136, 276
BmsI GCATC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 136
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bse8I GATNNNNATC 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 127
BseJI GATNNNNATC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 207
BseYI CCCAGC 2 cut(s) 216, 309
BshFI GGCC 2 cut(s) 32, 40
BslFI GGGAC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 2 cut(s) 32, 40
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 1 cut(s) 50
BspACI CCGC 1 cut(s) 83
BspANI GGCC 2 cut(s) 32, 40
BspLI GGNNCC 2 cut(s) 136, 276
BspTI CTTAAG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 224
BstAFI CTTAAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 1 cut(s) 53
BstMBI GATC 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 207
BsuRI GGCC 2 cut(s) 32, 40
BtsCI GGATG 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 134
CviAII CATG 3 cut(s) 103, 118, 188
CviJI RGCY 9 cut(s) 14, 25, 32, 40, 61, 220, 275, 283, 313
CviKI_1 RGCY 9 cut(s) 14, 25, 32, 40, 61, 220, 275, 283, 313
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 224
Eco147I AGGCCT 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 3 cut(s) 106, 121, 191
FaiI YATR 3 cut(s) 104, 119, 189
FalI AAGNNNNNCTT 1 cut(s) 312
FaqI GGGAC 1 cut(s) 120
FatI CATG 3 cut(s) 102, 117, 187
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 221
GsaI CCCAGC 2 cut(s) 220, 313
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 2 cut(s) 32, 40
Hin1II CATG 3 cut(s) 106, 121, 191
HinfI GANTC 3 cut(s) 43, 204, 296
HphI GGTGA 2 cut(s) 56, 86
Hpy188I TCNGA 4 cut(s) 20, 48, 184, 195
Hpy188III TCNNGA 2 cut(s) 153, 257
HpyCH4V TGCA 1 cut(s) 125
Hsp92II CATG 3 cut(s) 106, 121, 191
Kzo9I GATC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 166, 230, 242, 255, 323
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 2 cut(s) 91, 106
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 1 cut(s) 160
MseI TTAA 2 cut(s) 27, 331
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 220
MspCI CTTAAG 1 cut(s) 26
NdeII GATC 1 cut(s) 50
NlaIII CATG 3 cut(s) 106, 121, 191
NlaIV GGNNCC 2 cut(s) 136, 276
PceI AGGCCT 1 cut(s) 32
PfeI GAWTC 2 cut(s) 204, 296
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PspFI CCCAGC 2 cut(s) 216, 309
PspN4I GGNNCC 2 cut(s) 136, 276
PspPI GGNCC 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 2 cut(s) 27, 331
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 1 cut(s) 50
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 37
SduI GDGCHC 1 cut(s) 277
SetI ASST 3 cut(s) 8, 222, 315
SfaNI GCATC 1 cut(s) 112
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 2 cut(s) 91, 106
SseBI AGGCCT 1 cut(s) 32
SsiI CCGC 1 cut(s) 83
StuI AGGCCT 1 cut(s) 32
StyI CCWWGG 1 cut(s) 224
TaqI TCGA 1 cut(s) 304
TasI AATT 2 cut(s) 91, 106
TfiI GAWTC 2 cut(s) 204, 296
Tru1I TTAA 2 cut(s) 27, 331
Tru9I TTAA 2 cut(s) 27, 331
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 85, 119, 255
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 134
XapI RAATTY 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.