Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0019234

Physical Location & Seq

Genomic Coordinates Forward (+)

7892199 .. 7892945

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG094100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGACGTTTAAGGGTTTTAGATGGCTTAAGGCCTTGTGGCCGACTCGGAGATCAAGTAGGCTTCATCCGATTGATGATGGGGTTACAAATGTAAGGAATTTCATTACCGTGAATTCCTTTAACATGGAAATAGATGATGGTCTAATTCCCTTCCCCACCATTGCTATAAGCTCTAATCATGTTCAGAAAATGAGAAGTGCTTGTTTGAAAGGCAAAGACTGTTCTATATGCTTGGAGGATTTTGAGACGAGTAACGATCATCGAGTTGTTCCCTTGCCTTGCGCACACTTTTTTCATACAATGTGCATTTCTAAGTGGTTTGAGATGAGCTCTAAACTTCAATGCCCCTTGTGTGGATCAACTATCAAGAATCCTCCCCCTTCTTCGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

130

Amino Acids

14.77

Weight (kDa)

8.77

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	73 - 118	4.1e-13	Ring finger domain
zf-RING_11	PF17123	73 - 103	7.9e-09	RING-like zinc finger
zf-RING_5	PF14634	73 - 119	1.7e-06	zinc-RING finger domain
zf-C3HC4	PF00097	74 - 118	5e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	74 - 116	7.2e-08	RING-type zinc-finger
zf-C3HC4_2	PF13923	74 - 118	2.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	82 - 118	1e-05	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019234)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g10191 FvH4_5g10192
prunus_persica	Prupe.5G137000_v2.0.a1
rosa_multiflora	Rmu_ssc0000422.1_g000017
rosa_samantha	Rh7AG092000 Rh7BG093600 Rh7CG092900 Rh7DG094100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	283
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	2 cut(s)	97, 112
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	2 cut(s)	208, 341
AluBI	AGCT	2 cut(s)	171, 330
AluI	AGCT	2 cut(s)	171, 330
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	2 cut(s)	30, 38
ApoI	RAATTY	2 cut(s)	97, 112
AspLEI	GCGC	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	332
BccI	CCATC	3 cut(s)	15, 71, 131
BcoDI	GTCTC	1 cut(s)	239
BfrI	CTTAAG	1 cut(s)	26
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
Bpu14I	TTCGAA	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMI	GCAATG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	32, 40
BsiHKAI	GWGCWC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	239
BsmBI	CGTCTC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	32, 40
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	3 cut(s)	50, 256, 356
BspANI	GGCC	2 cut(s)	32, 40
BspPI	GGATC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	386
BspTI	CTTAAG	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	159
BssMI	GATC	3 cut(s)	50, 256, 356
Bst4CI	ACNGT	2 cut(s)	109, 221
BstAFI	CTTAAG	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	3 cut(s)	53, 259, 359
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	3 cut(s)	50, 256, 356
BsuRI	GGCC	2 cut(s)	32, 40
BtsCI	GGATG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	284
CviAII	CATG	2 cut(s)	124, 179
CviJI	RGCY	6 cut(s)	25, 32, 40, 61, 171, 330
CviKI_1	RGCY	6 cut(s)	25, 32, 40, 61, 171, 330
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	3 cut(s)	52, 258, 358
DpnII	GATC	3 cut(s)	50, 256, 356
EaeI	YGGCCR	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	330
Eco147I	AGGCCT	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	332
Eco53kI	GAGCTC	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	330
EcoRI	GAATTC	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	332
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	2 cut(s)	127, 182
FaiI	YATR	6 cut(s)	125, 167, 180, 227, 229, 297
FatI	CATG	2 cut(s)	123, 178
FokI	GGATG	1 cut(s)	51
FriOI	GRGCYC	1 cut(s)	332
FspI	TGCGCA	1 cut(s)	283
GlaI	GCGC	1 cut(s)	283
HaeIII	GGCC	2 cut(s)	32, 40
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	2 cut(s)	127, 182
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	43, 370
Hpy188I	TCNGA	3 cut(s)	48, 69, 186
Hpy188III	TCNNGA	1 cut(s)	367
HpyAV	CCTTC	2 cut(s)	160, 390
HpyCH4III	ACNGT	2 cut(s)	109, 221
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	1 cut(s)	306
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	127, 182
HspAI	GCGC	1 cut(s)	282
Kzo9I	GATC	3 cut(s)	50, 256, 356
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	2 cut(s)	82, 251
MalI	GATC	3 cut(s)	52, 258, 358
MboI	GATC	3 cut(s)	50, 256, 356
MboII	GAAGA	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	4 cut(s)	97, 112, 144, 388
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	229, 384
MseI	TTAA	4 cut(s)	9, 27, 120, 391
MslI	CAYNNNNRTG	1 cut(s)	107
MspCI	CTTAAG	1 cut(s)	26
NdeII	GATC	3 cut(s)	50, 256, 356
NlaIII	CATG	2 cut(s)	127, 182
NsbI	TGCGCA	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	386
PceI	AGGCCT	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	9, 27, 120, 391
Sau3AI	GATC	3 cut(s)	50, 256, 356
SchI	GAGTC	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	3 cut(s)	8, 173, 332
SfuI	TTCGAA	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	4 cut(s)	97, 112, 144, 388
SseBI	AGGCCT	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	109, 221
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	262, 386
TasI	AATT	4 cut(s)	97, 112, 144, 388
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	4 cut(s)	9, 27, 120, 391
Tru9I	TTAA	4 cut(s)	9, 27, 120, 391
TspDTI	ATGAA	3 cut(s)	53, 91, 284
Vha464I	CTTAAG	1 cut(s)	26
XapI	RAATTY	2 cut(s)	97, 112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.