FvH4_5g11340

Beta-amylase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
6452542 .. 6454827
2286 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11340.t1

Sequence Viewer

Length: 1611 bp
ATGTCTCGATCAATCCGAGAAACAAACTTAATAAACGTGACAAACCCTAAATCCGAAACTTTCTTTTCAAAACCTAATCTTAAGAGCAGCTCCGACGTACAACTTAACTATTTGTTAATAATGTCGACCACCATTGCTCTGCCACACGCACCATCAACCTTAACGCAATGCCCTAGCATCTTCCGAGCAAAACCTCACCCCATAATTCATCATCCACGATTCATGACCACCTGCTCCGCCGTTGGTAGTCGGCAGCTAAAACTATCGTCGGAGCAATCTTCCTCATTATCGTCGCCGGTGTACGTCACGCTACCTTTAGATGATCTCGGTGGCGAGGCGGACCCGGTGGGCACGGTGGGCAGGCGAGAGTTCACAGCTGAGTCAATTGGGGTGCTCGCAGAAGCAGGAGTTGAAGGCGTGGTCATGGATGTGTGGTGGGCCCTGGTCGAGAGGGAGCCTAGGGTTTATCATTGGGAAGCCTTTTTGGAGATGGCCGAAATGGTTCAACGCAGCGGATTAAAGATTCGTGTCGTGCTTGCTTTTCACAGTGAACGGGATTGGCCAACATGGCCAAAAACGGTTGATCTTCCTCTATGGATACTTGAAGAGTTCCAGAAAAATCGTGGTTTAGGATATAAGAATAGATATGGATGTTCAGGAGAAGAATACATTTCGCTTGGGTGTGATACCCTTCCTGTTTTACGGGGGCGTTCACCACTCGAAACATATGCAGATTTCATGAGGAGCTTCAGAGACAATTTCAGACCTTTTCTAGGTCATGTTATAACAGGAATTCAAGTTGGAATGGGCTCCGACGGTGAATTAAAATATCCTTCGGCTAATATACATGAATTGGTAATTGGTCGTACGGGAGAGTTTAATTGCTATGATAAGTACATGGTTGCGTCTCTACAAGAATACGCCAGAGAGCTAGGAATGCCTGAATGGGGAGATGTATGTCGTCTTTCAGAACCATTGCAATTTGCAGGAATTAAAGGAAATGGTAATGATGATTCTTGGAATACGCCGTATGGTGCATTTCTCCTCGAATGGTACTCCGGGATGTTGCTGATGCACGGAGAAAGGATATGCGAGCAAGCTGAGGCCATTTTCTCCGGGACAAATGTAACTATGTCAGGAAAACTAGGTGGGTACTATTACCATTATCTCCATCCATCTCATATTTCGGAGCTAACTGCTGGCTATTACAACACTTCAACAAGAGATGGATACTTGCCGTTTGCTCGCATGTTTGCTAGGCATGGGTTCACGTTATGCTGCTCCTCTTTTGACTTGAAAGATGAGACGGAAAGGTATTGCACCAGTAGTCCAGAAGGTCTTCTCAAGCAGATACTCTCAGCTGCTAGACTTTGTGGTATACCCGTGGAAGGTGAATCTTCTGACCCATGTTACAATGGGAGACTAACATCGTTAAAACAAGTGGTAAAAATGTCAAAGAATTACTTATCTGGACTTGAAAACCCTTCCTTCTCATTCAAACTGAGGGCCGACAAGTTCAAGTCGTTCAAGTCACCTAAATATTTATTAGAAAAGCATTCTCGAGCTACGTTTACTGATTTTGTTAGGCGAATGTCTAATCTCAACGATTAA

Protein Analysis

537

Amino Acids

60.44

Weight (kDa)

6.55

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_14 PF01373 124 - 486 4.7e-82 Glycosyl hydrolase family 14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017663)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11340
rosa_chinensis RchiOBHm_Chr7g0186521
rosa_laevigata RLG00000004838
rosa_multiflora Rmu_sc0000645.1_g000026
rosa_roxburghii Rroxscaffold_3G00268070
rosa_rugosa Rorug06G0474900 Rorug06G0474900
rosa_samantha Rh7AG066300 Rh7BG082200 Rh7CG081500 Rh7DG082400
rosa_wichuraiana Rw7G006840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 785
AarI CACCTGC 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 239
AccI GTMKAC 2 cut(s) 125, 1378
AciI CCGC 3 cut(s) 237, 338, 513
AcoI YGGCCR 3 cut(s) 492, 560, 569
AcsI RAATTY 1 cut(s) 792
AcuI CTGAAG 1 cut(s) 733
AfaI GTAC 6 cut(s) 99, 302, 868, 896, 1055, 1154
AfiI CCNNNNNNNGG 3 cut(s) 773, 947, 1388
AflII CTTAAG 1 cut(s) 80
AjnI CCWGG 1 cut(s) 441
AjuI GAANNNNNNNTTGG 2 cut(s) 843, 875
AluBI AGCT 9 cut(s) 90, 256, 377, 747, 931, 1100, 1192, 1361, 1565
AluI AGCT 9 cut(s) 90, 256, 377, 747, 931, 1100, 1192, 1361, 1565
Alw21I GWGCWC 1 cut(s) 396
Alw26I GTCTC 5 cut(s) 9, 747, 912, 1298, 1414
Ama87I CYCGRG 1 cut(s) 1560
AoxI GGCC 6 cut(s) 438, 492, 560, 569, 1104, 1506
ApaI GGGCCC 1 cut(s) 442
ApeKI GCWGC 5 cut(s) 87, 253, 510, 1278, 1361
ApoI RAATTY 1 cut(s) 792
Asp700I GAANNNNTTC 2 cut(s) 501, 1338
AspA2I CCTAGG 1 cut(s) 458
AspS9I GGNCC 4 cut(s) 340, 438, 439, 1506
AsuC2I CCSGG 3 cut(s) 344, 1060, 1117
AsuHPI GGTGA 5 cut(s) 188, 705, 830, 1403, 1524
AvaI CYCGRG 1 cut(s) 1560
AvaII GGWCC 1 cut(s) 340
AvrII CCTAGG 1 cut(s) 458
BaeGI GKGCMC 2 cut(s) 353, 442
BalI TGGCCA 2 cut(s) 562, 571
BanII GRGCYC 2 cut(s) 442, 812
BbsI GAAGAC 1 cut(s) 1331
Bbv12I GWGCWC 1 cut(s) 396
BbvCI CCTCAGC 1 cut(s) 1101
BbvI GCAGC 5 cut(s) 99, 265, 522, 1265, 1348
BccI CCATC 5 cut(s) 160, 484, 1179, 1183, 1220
BceAI ACGGC 3 cut(s) 224, 1012, 1222
BcgI CGANNNNNNTGC 2 cut(s) 710, 744
BciT130I CCWGG 1 cut(s) 443
BciVI GTATCC 2 cut(s) 591, 1223
BcnI CCSGG 3 cut(s) 344, 1060, 1117
BcoDI GTCTC 5 cut(s) 9, 747, 912, 1298, 1414
BfaI CTAG 7 cut(s) 174, 459, 773, 932, 1145, 1257, 1365
BfrI CTTAAG 1 cut(s) 80
BfuAI ACCTGC 1 cut(s) 239
BfuI GTATCC 2 cut(s) 591, 1223
BglI GCCNNNNNGGC 1 cut(s) 568
BisI GCNGC 5 cut(s) 88, 254, 511, 1279, 1362
BlnI CCTAGG 1 cut(s) 458
BlsI GCNGC 5 cut(s) 89, 255, 512, 1280, 1363
Bme1390I CCNGG 4 cut(s) 344, 443, 1060, 1117
Bme18I GGWCC 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 1560
BmgT120I GGNCC 4 cut(s) 340, 438, 439, 1506
BmiI GGNNCC 4 cut(s) 342, 440, 456, 811
BmrFI CCNGG 4 cut(s) 344, 443, 1060, 1117
BmsI GCATC 2 cut(s) 186, 1062
BpiI GAAGAC 1 cut(s) 1331
Bpu10I CCTNAGC 1 cut(s) 1101
BpuEI CTTGAG 1 cut(s) 1328
BpuMI CCSGG 3 cut(s) 344, 1060, 1117
BsaJI CCNNGG 3 cut(s) 441, 458, 1383
Bsc4I CCNNNNNNNGG 3 cut(s) 773, 947, 1388
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 1323
Bse3DI GCAATG 3 cut(s) 132, 173, 974
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 3 cut(s) 441, 458, 1383
BseGI GGATG 5 cut(s) 211, 433, 656, 1068, 1171
BseLI CCNNNNNNNGG 3 cut(s) 773, 947, 1388
BseMI GCAATG 3 cut(s) 132, 173, 974
BseMII CTCAG 4 cut(s) 369, 1092, 1371, 1493
BseNI ACTGG 1 cut(s) 1323
BseRI GAGGAG 3 cut(s) 757, 1034, 1273
BseSI GKGCMC 2 cut(s) 353, 442
BseXI GCAGC 5 cut(s) 99, 265, 522, 1265, 1348
BshFI GGCC 6 cut(s) 440, 494, 562, 571, 1106, 1508
BsiHKAI GWGCWC 1 cut(s) 396
BsiHKCI CYCGRG 1 cut(s) 1560
BsiSI CCGG 4 cut(s) 296, 344, 1059, 1116
BsiWI CGTACG 1 cut(s) 866
BslFI GGGAC 1 cut(s) 1132
BslI CCNNNNNNNGG 3 cut(s) 773, 947, 1388
BsmAI GTCTC 5 cut(s) 9, 747, 912, 1298, 1414
BsmBI CGTCTC 2 cut(s) 912, 1298
BsmFI GGGAC 1 cut(s) 1132
BsmI GAATGC 2 cut(s) 942, 1555
BsnI GGCC 6 cut(s) 440, 494, 562, 571, 1106, 1508
BsoBI CYCGRG 1 cut(s) 1560
Bsp120I GGGCCC 1 cut(s) 438
Bsp1286I GDGCHC 4 cut(s) 353, 396, 442, 812
Bsp143I GATC 3 cut(s) 8, 322, 583
BspACI CCGC 3 cut(s) 237, 338, 513
BspANI GGCC 6 cut(s) 440, 494, 562, 571, 1106, 1508
BspCNI CTCAG 4 cut(s) 370, 1093, 1370, 1494
BspHI TCATGA 2 cut(s) 222, 738
BspLI GGNNCC 4 cut(s) 342, 440, 456, 811
BspMI ACCTGC 1 cut(s) 239
BspTI CTTAAG 1 cut(s) 80
BsrDI GCAATG 3 cut(s) 132, 173, 974
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 1 cut(s) 1323
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 3 cut(s) 441, 458, 1383
BssMI GATC 3 cut(s) 8, 322, 583
BssNAI GTATAC 1 cut(s) 1379
BssT1I CCWWGG 1 cut(s) 458
Bst1107I GTATAC 1 cut(s) 1379
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 4 cut(s) 355, 548, 580, 818
Bst6I CTCTTC 1 cut(s) 600
BstAFI CTTAAG 1 cut(s) 80
BstC8I GCNNGC 7 cut(s) 362, 396, 537, 1094, 1098, 1201, 1246
BstDEI CTNAG 4 cut(s) 378, 1101, 1357, 1502
BstDSI CCRYGG 1 cut(s) 1383
BstENI CCTNNNNNAGG 1 cut(s) 771
BstF5I GGATG 5 cut(s) 211, 433, 656, 1068, 1171
BstKTI GATC 3 cut(s) 11, 325, 586
BstMAI GTCTC 5 cut(s) 9, 747, 912, 1298, 1414
BstMBI GATC 3 cut(s) 8, 322, 583
BstMWI GCNNNNNNNGC 3 cut(s) 357, 568, 937
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 1252
BstSCI CCNGG 4 cut(s) 342, 441, 1058, 1115
BstSLI GKGCMC 2 cut(s) 353, 442
BstV1I GCAGC 5 cut(s) 99, 265, 522, 1265, 1348
BstV2I GAAGAC 1 cut(s) 1331
BstZ17I GTATAC 1 cut(s) 1379
BsuI GTATCC 2 cut(s) 591, 1223
BsuRI GGCC 6 cut(s) 440, 494, 562, 571, 1106, 1508
BtgI CCRYGG 1 cut(s) 1383
BtsCI GGATG 5 cut(s) 211, 433, 656, 1068, 1171
BtsIMutI CAGTG 1 cut(s) 553
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 7 cut(s) 362, 396, 537, 1094, 1098, 1201, 1246
CciI TCATGA 2 cut(s) 222, 738
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 4 cut(s) 340, 438, 439, 1506
CseI GACGC 1 cut(s) 894
Csp6I GTAC 6 cut(s) 98, 301, 867, 895, 1054, 1153
CviQI GTAC 6 cut(s) 98, 301, 867, 895, 1054, 1153
DdeI CTNAG 4 cut(s) 378, 1101, 1357, 1502
DpnI GATC 3 cut(s) 10, 324, 585
DpnII GATC 3 cut(s) 8, 322, 583
EaeI YGGCCR 3 cut(s) 492, 560, 569
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
EciI GGCGGA 2 cut(s) 226, 353
Eco130I CCWWGG 1 cut(s) 458
Eco24I GRGCYC 2 cut(s) 442, 812
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 733
Eco88I CYCGRG 1 cut(s) 1560
EcoNI CCTNNNNNAGG 1 cut(s) 771
EcoO109I RGGNCCY 1 cut(s) 439
EcoRI GAATTC 1 cut(s) 792
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 458
EcoT38I GRGCYC 2 cut(s) 442, 812
ErhI CCWWGG 1 cut(s) 458
Esp3I CGTCTC 2 cut(s) 912, 1298
FalI AAGNNNNNCTT 2 cut(s) 1448, 1480
FaqI GGGAC 1 cut(s) 1132
FauNDI CATATG 1 cut(s) 727
FblI GTMKAC 2 cut(s) 125, 1378
Fnu4HI GCNGC 5 cut(s) 88, 254, 511, 1279, 1362
FokI GGATG 5 cut(s) 198, 440, 663, 1075, 1158
FriOI GRGCYC 2 cut(s) 442, 812
Fsp4HI GCNGC 5 cut(s) 88, 254, 511, 1279, 1362
FspBI CTAG 7 cut(s) 174, 459, 773, 932, 1145, 1257, 1365
GluI GCNGC 5 cut(s) 88, 254, 511, 1279, 1362
HaeIII GGCC 6 cut(s) 440, 494, 562, 571, 1106, 1508
HapII CCGG 4 cut(s) 296, 344, 1059, 1116
HgaI GACGC 1 cut(s) 894
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 5 cut(s) 219, 380, 523, 1013, 1394
HpaII CCGG 4 cut(s) 296, 344, 1059, 1116
HphI GGTGA 5 cut(s) 188, 705, 830, 1403, 1524
Hpy166II GTNNAC 8 cut(s) 126, 301, 372, 551, 713, 1269, 1379, 1572
Hpy8I GTNNAC 8 cut(s) 126, 301, 372, 551, 713, 1269, 1379, 1572
Hpy99I CGWCG 4 cut(s) 98, 271, 295, 818
HpyAV CCTTC 7 cut(s) 407, 701, 843, 1328, 1382, 1494, 1498
HpyCH4III ACNGT 4 cut(s) 355, 548, 580, 818
HpyCH4IV ACGT 5 cut(s) 36, 96, 303, 1271, 1568
HpyCH4V TGCA 6 cut(s) 731, 979, 986, 1037, 1075, 1320
HpyF10VI GCNNNNNNNGC 3 cut(s) 357, 568, 937
HpyF3I CTNAG 4 cut(s) 378, 1101, 1357, 1502
HpySE526I ACGT 5 cut(s) 36, 96, 303, 1271, 1568
Kzo9I GATC 3 cut(s) 8, 322, 583
LmnI GCTCC 8 cut(s) 95, 239, 271, 454, 744, 815, 1189, 1286
Lsp1109I GCAGC 5 cut(s) 99, 265, 522, 1265, 1348
LweI GCATC 2 cut(s) 186, 1062
MaeI CTAG 7 cut(s) 174, 459, 773, 932, 1145, 1257, 1365
MaeII ACGT 5 cut(s) 36, 96, 303, 1271, 1568
MaeIII GTNAC 5 cut(s) 37, 304, 1126, 1409, 1530
MalI GATC 3 cut(s) 10, 324, 585
MboI GATC 3 cut(s) 8, 322, 583
MboII GAAGA 7 cut(s) 172, 270, 578, 617, 674, 1331, 1389
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 4 cut(s) 353, 396, 442, 812
MlsI TGGCCA 2 cut(s) 562, 571
MluNI TGGCCA 2 cut(s) 562, 571
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 4 cut(s) 117, 249, 781, 837
Mox20I TGGCCA 2 cut(s) 562, 571
MroXI GAANNNNTTC 2 cut(s) 501, 1338
MscI TGGCCA 2 cut(s) 562, 571
MslI CAYNNNNRTG 1 cut(s) 428
Msp20I TGGCCA 2 cut(s) 562, 571
MspA1I CMGCKG 3 cut(s) 377, 513, 1361
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 4 cut(s) 296, 344, 1059, 1116
MspR9I CCNGG 4 cut(s) 344, 443, 1060, 1117
MunI CAATTG 1 cut(s) 384
Mva1269I GAATGC 2 cut(s) 942, 1555
MvaI CCWGG 1 cut(s) 443
MwoI GCNNNNNNNGC 3 cut(s) 357, 568, 937
NciI CCSGG 3 cut(s) 344, 1060, 1117
NdeI CATATG 1 cut(s) 727
NdeII GATC 3 cut(s) 8, 322, 583
NlaIV GGNNCC 4 cut(s) 342, 440, 456, 811
NmuCI GTSAC 3 cut(s) 37, 304, 1530
NspI RCATGY 1 cut(s) 1252
PaeR7I CTCGAG 1 cut(s) 1560
PagI TCATGA 2 cut(s) 222, 738
PaqCI CACCTGC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PctI GAATGC 2 cut(s) 942, 1555
PdmI GAANNNNTTC 2 cut(s) 501, 1338
PfeI GAWTC 4 cut(s) 219, 523, 1013, 1394
Pfl23II CGTACG 1 cut(s) 866
PfoI TCCNGGA 2 cut(s) 1058, 1115
PkrI GCNGC 5 cut(s) 89, 255, 512, 1280, 1363
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PsiI TTATAA 1 cut(s) 785
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspLI CGTACG 1 cut(s) 866
PspN4I GGNNCC 4 cut(s) 342, 440, 456, 811
PspOMI GGGCCC 1 cut(s) 438
PspPI GGNCC 4 cut(s) 340, 438, 439, 1506
PvuII CAGCTG 2 cut(s) 377, 1361
RsaI GTAC 6 cut(s) 99, 302, 868, 896, 1055, 1154
RsaNI GTAC 6 cut(s) 98, 301, 867, 895, 1054, 1153
RseI CAYNNNNRTG 1 cut(s) 428
SalI GTCGAC 1 cut(s) 124
SatI GCNGC 5 cut(s) 88, 254, 511, 1279, 1362
Sau3AI GATC 3 cut(s) 8, 322, 583
Sau96I GGNCC 4 cut(s) 340, 438, 439, 1506
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 4 cut(s) 344, 443, 1060, 1117
SduI GDGCHC 4 cut(s) 353, 396, 442, 812
SfaNI GCATC 2 cut(s) 186, 1062
SfiI GGCCNNNNNGGCC 1 cut(s) 568
Sfr274I CTCGAG 1 cut(s) 1560
SgrAI CRCCGGYG 1 cut(s) 295
SinI GGWCC 1 cut(s) 340
SlaI CTCGAG 1 cut(s) 1560
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 3 cut(s) 80, 1343, 1560
SmoI CTYRAG 3 cut(s) 80, 1343, 1560
SsiI CCGC 3 cut(s) 237, 338, 513
SspI AATATT 1 cut(s) 1541
SspMI CTAG 7 cut(s) 174, 459, 773, 932, 1145, 1257, 1365
StyD4I CCNGG 4 cut(s) 342, 441, 1058, 1115
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 4 cut(s) 355, 548, 580, 818
TaiI ACGT 5 cut(s) 39, 99, 306, 1274, 1571
TaqI TCGA 6 cut(s) 7, 125, 447, 720, 1047, 1561
TatI WGTACW 1 cut(s) 894
TfiI GAWTC 4 cut(s) 219, 523, 1013, 1394
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 3 cut(s) 37, 304, 1530
TseI GCWGC 5 cut(s) 87, 253, 510, 1278, 1361
Tsp45I GTSAC 3 cut(s) 37, 304, 1530
TspDTI ATGAA 4 cut(s) 197, 211, 727, 864
TspGWI ACGGA 2 cut(s) 1092, 1322
TspRI CASTG 1 cut(s) 553
Vha464I CTTAAG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 340
XagI CCTNNNNNAGG 1 cut(s) 771
XapI RAATTY 1 cut(s) 792
XceI RCATGY 1 cut(s) 1252
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XhoI CTCGAG 1 cut(s) 1560
XmaJI CCTAGG 1 cut(s) 458
XmiI GTMKAC 2 cut(s) 125, 1378
XmnI GAANNNNTTC 2 cut(s) 501, 1338
XspI CTAG 7 cut(s) 174, 459, 773, 932, 1145, 1257, 1365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.