RLG00000004838

Beta-amylase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
62929797 .. 62931539
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004838

Sequence Viewer

Length: 1260 bp
ATGTCTACGCGGACCCGGTTGGGCACGGTGGGCAGGCGCGAGTTCACGGTTGAGTCACTTGGGGTGCTTGCAGAAGCAGGAGTTGAAGGCGTGGTCATGGATGTGTGGTGGGCCCTGGTTGAGAGGGATCAGCCTAGGGTTTGTCATTGGGAACCCTATTTGGAGATGGCCGAGCTGGTTCAGCGCCGCGGATTAAAGATTCGGGTCGTGCTTGCGTTTCACGAGGGTTATCCTCATACTCATAGTTGCGCAGAAAAGGTTAGCCTTCCTCTATGGATACTTGAAGAGTTCTATAAAAATCCTGATTTGGTATGTGCTGAAAGACATGGACGGCATAAAGAAGAATACATTTCGCTCGGGTGTGATACCCTTCCTGTTTTACGGGGGCGTTCACCACTCGAAGCATATGCAGATTTCATGAGGAGCTTCAGAGACAATTTCAGACCTTTTCTAGGTCTTGTTATAACAGTTTGGTATGGGCCATTGGGCCCTGAAGGTGAATTAAAATATCATTCTTCTGATTTCCAGGATTTGTTATTGGGTCGTTCCGGAAAGTTTCATTGCTATGATAAGTATATGGTTGCGTCTCTAAAAGAACACGCCAGAGAGTTCGGAATGCCTGAATGGGGAGATGTGTATCGTGTTGCAGGACAATTGCAATTTGCTGAAAATGGTAATGATTCTTGGAATACTCCGTACGGTGCATTTTTGCTTGAATGGTACTCTGGAATGTTGCTTATGCACGGAGAAAGGCTATGCGAGCAAGCTGAGGCCATTTTCTCGGGGACAAATGTTACTATGTCAGCAAAACTAGCAGGGTACTATTGCCATTACCTCACTCAGTCTAATGTTTCGGAGCTGACTGCTGGCTATTACAACACTTCAACAAGAGATGGATACTTGCCGTTTGCTCGCATGTTTGCTAGGCATGGGTTTGCGTTATGCTGCTCCTGTTTTGACTTGAAAGATGAGATGGAAAGGTATCCCACTAGTAGTCCAGAAGGTCTTCTCAAACAGATGCTATCGGCTGCTAGGGTTTGTGGTATACCCGTGGAAGGTGAAACTTCTACATCCTTTTGCAATGGGAGATTAATATCGTTGAAACAAGTGGTAACAATGTCCAAGCATTACGTATCTGGACTAGAAAACCCCTCCTTCTCATTCAAGCTCAGGGCCAACAAGGAGGAGTTGTTCAATTCACCTAAATATTGGGCTATGTTTACTGATTTTGTCAGCCAAATGTCTAATGTCAATGATTAA

Protein Analysis

420

Amino Acids

47.83

Weight (kDa)

5.94

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_14 PF01373 18 - 409 1e-80 Glycosyl hydrolase family 14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017663)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11340
rosa_chinensis RchiOBHm_Chr7g0186521
rosa_laevigata RLG00000004838
rosa_multiflora Rmu_sc0000645.1_g000026
rosa_roxburghii Rroxscaffold_3G00268070
rosa_rugosa Rorug06G0474900 Rorug06G0474900
rosa_samantha Rh7AG066300 Rh7BG082200 Rh7CG081500 Rh7DG082400
rosa_wichuraiana Rw7G006840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 464
Acc16I TGCGCA 1 cut(s) 250
AccI GTMKAC 2 cut(s) 5, 1045
AccII CGCG 3 cut(s) 10, 39, 189
AccIII TCCGGA 1 cut(s) 548
AciI CCGC 3 cut(s) 10, 187, 189
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 168
AcuI CTGAAG 2 cut(s) 412, 513
AfaI GTAC 3 cut(s) 698, 722, 821
AfiI CCNNNNNNNGG 3 cut(s) 452, 626, 1055
AgsI TTSAA 8 cut(s) 86, 284, 716, 885, 964, 1102, 1165, 1195
AhlI ACTAGT 1 cut(s) 989
AjnI CCWGG 2 cut(s) 114, 525
AloI GAACNNNNNNTCC 2 cut(s) 1175, 1207
AluBI AGCT 5 cut(s) 175, 426, 767, 859, 1168
AluI AGCT 5 cut(s) 175, 426, 767, 859, 1168
Alw26I GTCTC 2 cut(s) 426, 591
AlwI GGATC 1 cut(s) 135
Ama87I CYCGRG 2 cut(s) 356, 781
Aor13HI TCCGGA 1 cut(s) 548
AoxI GGCC 6 cut(s) 111, 168, 479, 487, 771, 1173
ApaI GGGCCC 2 cut(s) 115, 491
ApeKI GCWGC 2 cut(s) 945, 1028
AseI ATTAAT 1 cut(s) 1091
Asp700I GAANNNNTTC 1 cut(s) 1005
AspA2I CCTAGG 1 cut(s) 134
AspLEI GCGC 3 cut(s) 39, 186, 251
AspS9I GGNCC 7 cut(s) 12, 111, 112, 479, 487, 488, 1173
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 4 cut(s) 384, 509, 1070, 1191
AvaI CYCGRG 2 cut(s) 356, 781
AvaII GGWCC 1 cut(s) 12
AvrII CCTAGG 1 cut(s) 134
BaeGI GKGCMC 3 cut(s) 26, 115, 491
BanII GRGCYC 2 cut(s) 115, 491
BauI CACGAG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 998
BbvCI CCTCAGC 1 cut(s) 768
BbvI GCAGC 2 cut(s) 932, 1015
BccI CCATC 3 cut(s) 160, 887, 967
BceAI ACGGC 2 cut(s) 347, 889
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 2 cut(s) 116, 527
BciVI GTATCC 3 cut(s) 270, 890, 993
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 426, 591
BcuI ACTAGT 1 cut(s) 989
BfaI CTAG 7 cut(s) 135, 452, 812, 924, 990, 1032, 1142
BfoI RGCGCY 1 cut(s) 187
BfuI GTATCC 3 cut(s) 270, 890, 993
BisI GCNGC 3 cut(s) 187, 946, 1029
BlnI CCTAGG 1 cut(s) 134
BlsI GCNGC 3 cut(s) 188, 947, 1030
Bme1390I CCNGG 3 cut(s) 16, 116, 527
Bme18I GGWCC 1 cut(s) 12
BmeT110I CYCGRG 2 cut(s) 356, 781
BmgT120I GGNCC 7 cut(s) 12, 111, 112, 479, 487, 488, 1173
BmiI GGNNCC 4 cut(s) 14, 113, 153, 489
BmrFI CCNGG 3 cut(s) 16, 116, 527
BmsI GCATC 1 cut(s) 1008
BpiI GAAGAC 1 cut(s) 998
Bpu10I CCTNAGC 2 cut(s) 768, 1169
BpuMI CCSGG 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 1132
BsaBI GATNNNNATC 2 cut(s) 636, 1093
BsaJI CCNNGG 4 cut(s) 114, 134, 187, 1050
BsaWI WCCGGW 1 cut(s) 548
BsaXI ACNNNNNCTCC 2 cut(s) 1175, 1205
Bsc4I CCNNNNNNNGG 3 cut(s) 452, 626, 1055
Bse3DI GCAATG 2 cut(s) 559, 1087
Bse8I GATNNNNATC 2 cut(s) 636, 1093
BseAI TCCGGA 1 cut(s) 548
BseBI CCWGG 2 cut(s) 116, 527
BseDI CCNNGG 4 cut(s) 114, 134, 187, 1050
BseGI GGATG 2 cut(s) 106, 1070
BseJI GATNNNNATC 2 cut(s) 636, 1093
BseLI CCNNNNNNNGG 3 cut(s) 452, 626, 1055
BseMI GCAATG 2 cut(s) 559, 1087
BseMII CTCAG 3 cut(s) 759, 854, 1183
BseRI GAGGAG 2 cut(s) 436, 1199
BseSI GKGCMC 3 cut(s) 26, 115, 491
BseXI GCAGC 2 cut(s) 932, 1015
Bsh1236I CGCG 3 cut(s) 10, 39, 189
BshFI GGCC 6 cut(s) 113, 170, 481, 489, 773, 1175
BsiHKCI CYCGRG 2 cut(s) 356, 781
BsiSI CCGG 2 cut(s) 16, 549
BsiWI CGTACG 1 cut(s) 696
BslFI GGGAC 1 cut(s) 799
BslI CCNNNNNNNGG 3 cut(s) 452, 626, 1055
BsmAI GTCTC 2 cut(s) 426, 591
BsmBI CGTCTC 1 cut(s) 591
BsmFI GGGAC 1 cut(s) 799
BsmI GAATGC 1 cut(s) 621
BsnI GGCC 6 cut(s) 113, 170, 481, 489, 773, 1175
BsoBI CYCGRG 2 cut(s) 356, 781
Bsp120I GGGCCC 2 cut(s) 111, 487
Bsp1286I GDGCHC 3 cut(s) 26, 115, 491
Bsp13I TCCGGA 1 cut(s) 548
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 3 cut(s) 10, 187, 189
BspANI GGCC 6 cut(s) 113, 170, 481, 489, 773, 1175
BspCNI CTCAG 3 cut(s) 760, 853, 1182
BspEI TCCGGA 1 cut(s) 548
BspFNI CGCG 3 cut(s) 10, 39, 189
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 4 cut(s) 14, 113, 153, 489
BspPI GGATC 1 cut(s) 135
BsrDI GCAATG 2 cut(s) 559, 1087
BssECI CCNNGG 4 cut(s) 114, 134, 187, 1050
BssMI GATC 1 cut(s) 127
BssNAI GTATAC 1 cut(s) 1046
BssSI CACGAG 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 134
Bst1107I GTATAC 1 cut(s) 1046
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 116, 527
Bst4CI ACNGT 4 cut(s) 28, 49, 469, 701
Bst6I CTCTTC 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 1132
BstC8I GCNNGC 7 cut(s) 35, 69, 213, 761, 765, 868, 913
BstDEI CTNAG 3 cut(s) 768, 840, 1169
BstDSI CCRYGG 2 cut(s) 187, 1050
BstENI CCTNNNNNAGG 1 cut(s) 450
BstF5I GGATG 2 cut(s) 106, 1070
BstFNI CGCG 3 cut(s) 10, 39, 189
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 3 cut(s) 39, 186, 251
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 2 cut(s) 426, 591
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 4 cut(s) 30, 181, 760, 812
BstNI CCWGG 2 cut(s) 116, 527
BstNSI RCATGY 1 cut(s) 919
BstSCI CCNGG 3 cut(s) 14, 114, 525
BstSLI GKGCMC 3 cut(s) 26, 115, 491
BstSNI TACGTA 1 cut(s) 1132
BstUI CGCG 3 cut(s) 10, 39, 189
BstV1I GCAGC 2 cut(s) 932, 1015
BstV2I GAAGAC 1 cut(s) 998
BstZ17I GTATAC 1 cut(s) 1046
BsuI GTATCC 3 cut(s) 270, 890, 993
BsuRI GGCC 6 cut(s) 113, 170, 481, 489, 773, 1175
BtgI CCRYGG 2 cut(s) 187, 1050
BtsCI GGATG 2 cut(s) 106, 1070
Cac8I GCNNGC 7 cut(s) 35, 69, 213, 761, 765, 868, 913
CciI TCATGA 1 cut(s) 417
CfoI GCGC 3 cut(s) 39, 186, 251
Cfr13I GGNCC 7 cut(s) 12, 111, 112, 479, 487, 488, 1173
Cfr42I CCGCGG 1 cut(s) 190
CseI GACGC 1 cut(s) 573
Csp6I GTAC 3 cut(s) 697, 721, 820
CviAII CATG 5 cut(s) 97, 326, 418, 916, 929
CviQI GTAC 3 cut(s) 697, 721, 820
DdeI CTNAG 3 cut(s) 768, 840, 1169
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco105I TACGTA 1 cut(s) 1132
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 2 cut(s) 115, 491
Eco47I GGWCC 1 cut(s) 12
Eco57I CTGAAG 2 cut(s) 412, 513
Eco88I CYCGRG 2 cut(s) 356, 781
EcoNI CCTNNNNNAGG 1 cut(s) 450
EcoO109I RGGNCCY 2 cut(s) 112, 488
EcoRII CCWGG 2 cut(s) 114, 525
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 2 cut(s) 115, 491
ErhI CCWWGG 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 591
FaeI CATG 5 cut(s) 100, 329, 421, 919, 932
FaqI GGGAC 1 cut(s) 799
FatI CATG 5 cut(s) 96, 325, 417, 915, 928
FauNDI CATATG 1 cut(s) 406
FblI GTMKAC 2 cut(s) 5, 1045
Fnu4HI GCNGC 3 cut(s) 187, 946, 1029
FokI GGATG 2 cut(s) 113, 1057
FriOI GRGCYC 2 cut(s) 115, 491
Fsp4HI GCNGC 3 cut(s) 187, 946, 1029
FspBI CTAG 7 cut(s) 135, 452, 812, 924, 990, 1032, 1142
FspI TGCGCA 1 cut(s) 250
GlaI GCGC 3 cut(s) 38, 185, 250
GluI GCNGC 3 cut(s) 187, 946, 1029
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 6 cut(s) 113, 170, 481, 489, 773, 1175
HapII CCGG 2 cut(s) 16, 549
HgaI GACGC 1 cut(s) 573
HhaI GCGC 3 cut(s) 39, 186, 251
Hin1II CATG 5 cut(s) 100, 329, 421, 919, 932
Hin6I GCGC 3 cut(s) 37, 184, 249
HinP1I GCGC 3 cut(s) 37, 184, 249
HinfI GANTC 3 cut(s) 53, 199, 680
HpaII CCGG 2 cut(s) 16, 549
HphI GGTGA 4 cut(s) 384, 509, 1070, 1191
Hpy166II GTNNAC 5 cut(s) 6, 45, 392, 1046, 1221
Hpy188I TCNGA 5 cut(s) 431, 443, 520, 614, 856
Hpy188III TCNNGA 7 cut(s) 221, 302, 418, 549, 726, 998, 1137
Hpy8I GTNNAC 5 cut(s) 6, 45, 392, 1046, 1221
HpyAV CCTTC 7 cut(s) 80, 275, 380, 488, 995, 1049, 1165
HpyCH4III ACNGT 4 cut(s) 28, 49, 469, 701
HpyCH4IV ACGT 1 cut(s) 1131
HpyCH4V TGCA 7 cut(s) 71, 410, 647, 658, 704, 742, 1080
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 181, 760, 812
HpyF3I CTNAG 3 cut(s) 768, 840, 1169
HpySE526I ACGT 1 cut(s) 1131
Hsp92II CATG 5 cut(s) 100, 329, 421, 919, 932
HspAI GCGC 3 cut(s) 37, 184, 249
Kpn2I TCCGGA 1 cut(s) 548
KspI CCGCGG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 3 cut(s) 423, 856, 953
Lsp1109I GCAGC 2 cut(s) 932, 1015
LweI GCATC 1 cut(s) 1008
MaeI CTAG 7 cut(s) 135, 452, 812, 924, 990, 1032, 1142
MaeII ACGT 1 cut(s) 1131
MaeIII GTNAC 3 cut(s) 54, 793, 1111
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 4 cut(s) 296, 353, 507, 998
MfeI CAATTG 1 cut(s) 653
MhlI GDGCHC 3 cut(s) 26, 115, 491
MluCI AATT 5 cut(s) 436, 500, 653, 659, 1195
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 9 cut(s) 117, 217, 243, 279, 414, 763, 845, 1162, 1177
MroI TCCGGA 1 cut(s) 548
MroXI GAANNNNTTC 1 cut(s) 1005
MseI TTAA 4 cut(s) 194, 503, 1091, 1258
MslI CAYNNNNRTG 2 cut(s) 101, 564
MspA1I CMGCKG 1 cut(s) 189
MspI CCGG 2 cut(s) 16, 549
MspR9I CCNGG 3 cut(s) 16, 116, 527
MunI CAATTG 1 cut(s) 653
Mva1269I GAATGC 1 cut(s) 621
MvaI CCWGG 2 cut(s) 116, 527
MvnI CGCG 3 cut(s) 10, 39, 189
MwoI GCNNNNNNNGC 4 cut(s) 30, 181, 760, 812
NciI CCSGG 1 cut(s) 16
NdeI CATATG 1 cut(s) 406
NdeII GATC 1 cut(s) 127
NlaIII CATG 5 cut(s) 100, 329, 421, 919, 932
NlaIV GGNNCC 4 cut(s) 14, 113, 153, 489
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 54
NsbI TGCGCA 1 cut(s) 250
NspI RCATGY 1 cut(s) 919
PagI TCATGA 1 cut(s) 417
PctI GAATGC 1 cut(s) 621
PdmI GAANNNNTTC 1 cut(s) 1005
PfeI GAWTC 2 cut(s) 199, 680
Pfl23II CGTACG 1 cut(s) 696
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 3 cut(s) 188, 947, 1030
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Ppu21I YACGTR 1 cut(s) 1132
PshBI ATTAAT 1 cut(s) 1091
PsiI TTATAA 1 cut(s) 464
Psp6I CCWGG 2 cut(s) 114, 525
PspGI CCWGG 2 cut(s) 114, 525
PspLI CGTACG 1 cut(s) 696
PspN4I GGNNCC 4 cut(s) 14, 113, 153, 489
PspOMI GGGCCC 2 cut(s) 111, 487
PspPI GGNCC 7 cut(s) 12, 111, 112, 479, 487, 488, 1173
RsaI GTAC 3 cut(s) 698, 722, 821
RsaNI GTAC 3 cut(s) 697, 721, 820
RseI CAYNNNNRTG 2 cut(s) 101, 564
SacII CCGCGG 1 cut(s) 190
SaqAI TTAA 4 cut(s) 194, 503, 1091, 1258
SatI GCNGC 3 cut(s) 187, 946, 1029
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 7 cut(s) 12, 111, 112, 479, 487, 488, 1173
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 3 cut(s) 16, 116, 527
SduI GDGCHC 3 cut(s) 26, 115, 491
SfaNI GCATC 1 cut(s) 1008
Sfr303I CCGCGG 1 cut(s) 190
SgrBI CCGCGG 1 cut(s) 190
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 2 cut(s) 101, 564
SnaBI TACGTA 1 cut(s) 1132
SpeI ACTAGT 1 cut(s) 989
Sse9I AATT 5 cut(s) 436, 500, 653, 659, 1195
SsiI CCGC 3 cut(s) 10, 187, 189
SspI AATATT 1 cut(s) 1208
SspMI CTAG 7 cut(s) 135, 452, 812, 924, 990, 1032, 1142
StyD4I CCNGG 3 cut(s) 14, 114, 525
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 4 cut(s) 28, 49, 469, 701
TaiI ACGT 1 cut(s) 1134
TaqI TCGA 1 cut(s) 399
TasI AATT 5 cut(s) 436, 500, 653, 659, 1195
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 2 cut(s) 199, 680
Tru1I TTAA 4 cut(s) 194, 503, 1091, 1258
Tru9I TTAA 4 cut(s) 194, 503, 1091, 1258
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 2 cut(s) 945, 1028
Tsp45I GTSAC 1 cut(s) 54
TspDTI ATGAA 2 cut(s) 406, 548
TspGWI ACGGA 2 cut(s) 684, 759
VpaK11BI GGWCC 1 cut(s) 12
VspI ATTAAT 1 cut(s) 1091
XagI CCTNNNNNAGG 1 cut(s) 450
XceI RCATGY 1 cut(s) 919
XmaJI CCTAGG 1 cut(s) 134
XmiI GTMKAC 2 cut(s) 5, 1045
XmnI GAANNNNTTC 1 cut(s) 1005
XspI CTAG 7 cut(s) 135, 452, 812, 924, 990, 1032, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.