Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000645.1

Orthogroup ID

OG0017663

Physical Location & Seq

Genomic Coordinates Forward (+)

101384 .. 102159

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000645.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggttgcgtctctcaaagaacacgccagagaggtcggaatgcctgaatggggaaatgtgtatcgtgttgcagaacaattgcaatttgccgaaaatggtaatgattcttggaatacgccgtacggtgcatttttgcttgaatggtactctggaatgttgcttatgcacggagaaaggatatgcgagcaagctgaggccattttctcgggaacaaatgttaccatgtcagcaaaactagcagggcactattgccattacctcactcagtctcatgtttcggagctgactgctggctattacaacacttcaacaagagatggatacttgccgtttgctcgcatgtttgctaggcaaactatgtctcttaggcatgggtttgcgttatgctgctcctgttttgacttgaaagatgagatggaaaggtatcccaccagtagtccagaaggtcttctcaaacagatgctctcggctgctagggtttgtggtattcccgtggaaggtgaaacttctgcatccctttgcaatgggagaataatatcgttgaaacaagtggtaacaatgtccaagcattacttatctggactggaaaacccctccttctcattcaagctcagggccaccaaggaggagttgtttaattcaccaaaatattgggctatgtttactgattttgtcagccaaatgtctaatgtcaatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

233

Amino Acids

26.28

Weight (kDa)

5.98

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017663)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g11340
rosa_chinensis	RchiOBHm_Chr7g0186521
rosa_laevigata	RLG00000004838
rosa_multiflora	Rmu_sc0000645.1_g000026
rosa_roxburghii	Rroxscaffold_3G00268070
rosa_rugosa	Rorug06G0474900 Rorug06G0474900
rosa_samantha	Rh7AG066300 Rh7BG082200 Rh7CG081500 Rh7DG082400
rosa_wichuraiana	Rw7G006840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	122, 146
AfiI	CCNNNNNNNGG	2 cut(s)	50, 497
AgsI	TTSAA	5 cut(s)	140, 309, 406, 544, 607
AluBI	AGCT	3 cut(s)	191, 283, 610
AluI	AGCT	3 cut(s)	191, 283, 610
Alw26I	GTCTC	3 cut(s)	15, 273, 366
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	2 cut(s)	195, 615
ApeKI	GCWGC	2 cut(s)	387, 470
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	615
AsuHPI	GGTGA	2 cut(s)	512, 633
AvaI	CYCGRG	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	374, 457
BccI	CCATC	2 cut(s)	311, 409
BceAI	ACGGC	2 cut(s)	103, 313
BciVI	GTATCC	2 cut(s)	314, 435
BcoDI	GTCTC	3 cut(s)	15, 273, 366
BfaI	CTAG	3 cut(s)	236, 348, 474
BfuI	GTATCC	2 cut(s)	314, 435
BisI	GCNGC	2 cut(s)	388, 471
BlsI	GCNGC	2 cut(s)	389, 472
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	615
BmsI	GCATC	2 cut(s)	450, 521
BpiI	GAAGAC	1 cut(s)	440
Bpu10I	CCTNAGC	2 cut(s)	192, 611
BsaJI	CCNNGG	2 cut(s)	492, 621
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 497
Bse1I	ACTGG	2 cut(s)	432, 588
Bse3DI	GCAATG	1 cut(s)	529
BseDI	CCNNGG	2 cut(s)	492, 621
BseGI	GGATG	1 cut(s)	512
BseLI	CCNNNNNNNGG	2 cut(s)	50, 497
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	3 cut(s)	183, 278, 625
BseNI	ACTGG	2 cut(s)	432, 588
BseRI	GAGGAG	1 cut(s)	641
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	374, 457
BshFI	GGCC	2 cut(s)	197, 617
BsiHKCI	CYCGRG	1 cut(s)	205
BsiWI	CGTACG	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	50, 497
BsmAI	GTCTC	3 cut(s)	15, 273, 366
BsmBI	CGTCTC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	197, 617
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	246
BspANI	GGCC	2 cut(s)	197, 617
BspCNI	CTCAG	3 cut(s)	184, 277, 624
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	432, 588
BssECI	CCNNGG	2 cut(s)	492, 621
BssT1I	CCWWGG	1 cut(s)	621
Bst4CI	ACNGT	1 cut(s)	125
BstC8I	GCNNGC	4 cut(s)	185, 189, 292, 337
BstDEI	CTNAG	4 cut(s)	192, 264, 365, 611
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	512
BstMAI	GTCTC	3 cut(s)	15, 273, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	374, 457
BstV2I	GAAGAC	1 cut(s)	440
BstXI	CCANNNNNNTGG	1 cut(s)	651
BsuI	GTATCC	2 cut(s)	314, 435
BsuRI	GGCC	2 cut(s)	197, 617
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	512
Cac8I	GCNNGC	4 cut(s)	185, 189, 292, 337
Cfr13I	GGNCC	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	121, 145
CviAII	CATG	4 cut(s)	223, 272, 340, 371
CviJI	RGCY	9 cut(s)	191, 197, 283, 294, 470, 610, 617, 656, 678
CviKI_1	RGCY	9 cut(s)	191, 197, 283, 294, 470, 610, 617, 656, 678
CviQI	GTAC	2 cut(s)	121, 145
DdeI	CTNAG	4 cut(s)	192, 264, 365, 611
Eco130I	CCWWGG	1 cut(s)	621
Eco88I	CYCGRG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	621
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	4 cut(s)	226, 275, 343, 374
FaiI	YATR	9 cut(s)	164, 181, 224, 273, 341, 359, 372, 385, 659
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FatI	CATG	4 cut(s)	222, 271, 339, 370
Fnu4HI	GCNGC	2 cut(s)	388, 471
FokI	GGATG	1 cut(s)	499
Fsp4HI	GCNGC	2 cut(s)	388, 471
FspBI	CTAG	3 cut(s)	236, 348, 474
GluI	GCNGC	2 cut(s)	388, 471
HaeIII	GGCC	2 cut(s)	197, 617
Hin1II	CATG	4 cut(s)	226, 275, 343, 374
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	2 cut(s)	512, 633
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188I	TCNGA	2 cut(s)	38, 280
Hpy188III	TCNNGA	4 cut(s)	150, 207, 440, 579
Hpy8I	GTNNAC	1 cut(s)	663
HpyAV	CCTTC	3 cut(s)	437, 491, 607
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	6 cut(s)	71, 82, 128, 166, 512, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	4 cut(s)	192, 264, 365, 611
Hsp92II	CATG	4 cut(s)	226, 275, 343, 374
LmnI	GCTCC	2 cut(s)	280, 395
Lsp1109I	GCAGC	2 cut(s)	374, 457
LweI	GCATC	2 cut(s)	450, 521
MaeI	CTAG	3 cut(s)	236, 348, 474
MaeIII	GTNAC	2 cut(s)	217, 553
MboII	GAAGA	1 cut(s)	440
MfeI	CAATTG	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	77, 83, 637
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	5 cut(s)	25, 187, 269, 604, 619
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	2 cut(s)	636, 700
MunI	CAATTG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	236
NlaIII	CATG	4 cut(s)	226, 275, 343, 374
NmeAIII	GCCGAG	1 cut(s)	446
NspI	RCATGY	1 cut(s)	343
PctI	GAATGC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	104
Pfl23II	CGTACG	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	389, 472
PspLI	CGTACG	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	615
PsrI	GAACNNNNNNTAC	2 cut(s)	202, 234
RsaI	GTAC	2 cut(s)	122, 146
RsaNI	GTAC	2 cut(s)	121, 145
SaqAI	TTAA	2 cut(s)	636, 700
SatI	GCNGC	2 cut(s)	388, 471
Sau96I	GGNCC	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	36, 193, 261, 285, 425, 448, 502, 612
SfaNI	GCATC	2 cut(s)	450, 521
Sse9I	AATT	3 cut(s)	77, 83, 637
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	3 cut(s)	236, 348, 474
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	1 cut(s)	125
TasI	AATT	3 cut(s)	77, 83, 637
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	2 cut(s)	636, 700
Tru9I	TTAA	2 cut(s)	636, 700
TseI	GCWGC	2 cut(s)	387, 470
TspGWI	ACGGA	1 cut(s)	183
XceI	RCATGY	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	3 cut(s)	236, 348, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.