FvH4_5g11940

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0021074
Physical Location & Seq
Forward (+)
6757993 .. 6760151
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g11940.t1

Sequence Viewer

Length: 1131 bp
ATGGTAAAAATGAACAAGAACAAATCTTCAGGCGAGACTGCAAAATTGGATCCGAGTCCAACCGCATTAGTCAAAGTCTCAAATGAAAGTGAAACAACGGTTACAGCCCTGAGCAAGAAAGTTAGGAGCATCCTTCTGCTCAATGTAATCACTGTTGTCTATGCGAGTAACTTCACGTTTGTGAAAGAGGTGGAATCTGTGATGGACCCGGCGACATTTTCTGTTGTGCGGTTTGCCATGTCTGCTGTTCCATTCATCCCTTTTGTTATCAGAGCAAGAGGTGACGTTGATACTCGGAATGCAGGGATTGAGTTGGGGTTCTGGGTTAGTCTAGGGTACCTTATGCAGGCATTAGGACTGTTAACATCGGATGCTGGTCGCGCATCGTTTCTTTCTATGTTCACTGTGATTATTGTTCCCTTGCTTGATGGTATGTTAGGAGCAGCAGTCCCTGCTCATGTCTGGTTTGGTGCCTTCATGTCTATTGTAGGAGTTGGGCTGCTGGAATCCAGTGGATCTCCCCCAAATGTTGGGGATTTGCTGAACTTGTTGAGCGCGGTGTTTTTTGGGGTTCATATGCTTAGAACAGAGCATATATCAAGAAACGCAAAGAGAGAAAACTTCTTGCCTATGCTTGGATATGAGATATGTGTTGTTGCTTCCTTATCAACCATATGGTATCTCATTGGAGCATGGTCTGGTGGCGGCCTCCACGACTTTAACCCATCATTGTGGACATGGGACATGTTCTGGGAGTGGATGCTTGTGTTTCCATGGATACCTGCACTGTACACAGGCATATTCTCCACTGTGTTATGCTTATGGGTAGAGATGGTCGCAATGCGCAATGTATCAGCCACAGAGACGGCAATAATTTATGGTTTAGAGCCTGTCTGGGGTGCAGGTTTCGCATGGTTTCTCCTTGGCGAAACATGGGGTTCTACTGGCTTGATTGGTGCTGCTCTTGTGCTAGTTGGAAGCTTAACAGTCCAGATATTTGGATCAACATCTCCAACAGAGCCTTCAAAAGATGAAATGAAACTCACTTTCCCAGTAGATAAATACAACGGCTTATCTGCCACGTCCGTTATAGTTCGTTCTGAAAAGGACACTCCTGGTCTGCGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

377

Amino Acids

40.93

Weight (kDa)

5.48

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 43 - 168 4.3e-08 EamA-like transporter family
EamA PF00892 178 - 328 1.5e-12 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11940 FvH4_5g11940
malus_domestica MD16G1025900.v1.1
rosa_chinensis RchiOBHm_Chr7g0199801
rosa_laevigata RLG00000034533

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 845
Acc36I ACCTGC 2 cut(s) 790, 893
Acc65I GGTACC 1 cut(s) 336
AccB1I GGYRCC 2 cut(s) 336, 470
AccB7I CCANNNNNTGG 1 cut(s) 530
AccII CGCG 2 cut(s) 381, 557
AciI CCGC 5 cut(s) 63, 229, 557, 705, 1123
AclWI GGATC 4 cut(s) 44, 57, 523, 1009
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 2 cut(s) 338, 791
AfiI CCNNNNNNNGG 4 cut(s) 346, 530, 635, 896
AflIII ACRYGT 1 cut(s) 744
AgsI TTSAA 1 cut(s) 1026
AjiI CACGTC 1 cut(s) 1083
AjnI CCWGG 1 cut(s) 1114
AjuI GAANNNNNNNTTGG 2 cut(s) 1006, 1038
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 1 cut(s) 981
AluI AGCT 1 cut(s) 981
Alw26I GTCTC 3 cut(s) 29, 82, 857
AlwI GGATC 4 cut(s) 44, 57, 523, 1009
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 1 cut(s) 706
ApeKI GCWGC 3 cut(s) 443, 499, 959
Asp718I GGTACC 1 cut(s) 336
AspLEI GCGC 3 cut(s) 383, 557, 846
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 293
AvaII GGWCC 1 cut(s) 205
BamHI GGATCC 1 cut(s) 49
BanI GGYRCC 2 cut(s) 336, 470
BbvI GCAGC 3 cut(s) 455, 486, 946
BccI CCATC 4 cut(s) 196, 422, 733, 826
BceAI ACGGC 2 cut(s) 882, 1084
BciT130I CCWGG 1 cut(s) 1116
BciVI GTATCC 1 cut(s) 771
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 3 cut(s) 29, 82, 857
BfaI CTAG 2 cut(s) 332, 971
BfuAI ACCTGC 2 cut(s) 790, 893
BfuI GTATCC 1 cut(s) 771
BisI GCNGC 4 cut(s) 444, 500, 706, 960
BlsI GCNGC 4 cut(s) 445, 501, 707, 961
Bme1390I CCNGG 2 cut(s) 209, 1116
Bme18I GGWCC 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 1083
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 4 cut(s) 51, 207, 338, 472
BmrFI CCNGG 2 cut(s) 209, 1116
BmrI ACTGGG 1 cut(s) 1046
BmsI GCATC 4 cut(s) 138, 361, 392, 750
BmuI ACTGGG 1 cut(s) 1046
Bpu10I CCTNAGC 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 1006
BsaJI CCNNGG 2 cut(s) 773, 922
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 4 cut(s) 346, 530, 635, 896
Bse1I ACTGG 3 cut(s) 510, 949, 1052
Bse3DI GCAATG 2 cut(s) 846, 853
Bse8I GATNNNNATC 1 cut(s) 1006
BseBI CCWGG 1 cut(s) 1116
BseDI CCNNGG 2 cut(s) 773, 922
BseGI GGATG 4 cut(s) 129, 255, 376, 765
BseJI GATNNNNATC 1 cut(s) 1006
BseLI CCNNNNNNNGG 4 cut(s) 346, 530, 635, 896
BseMI GCAATG 2 cut(s) 846, 853
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 3 cut(s) 510, 949, 1052
BseXI GCAGC 3 cut(s) 455, 486, 946
BsgI GTGCAG 2 cut(s) 768, 921
Bsh1236I CGCG 2 cut(s) 381, 557
BshFI GGCC 1 cut(s) 708
BshNI GGYRCC 2 cut(s) 336, 470
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 2 cut(s) 434, 755
BslI CCNNNNNNNGG 4 cut(s) 346, 530, 635, 896
BsmAI GTCTC 3 cut(s) 29, 82, 857
BsmBI CGTCTC 1 cut(s) 857
BsmFI GGGAC 2 cut(s) 434, 755
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 1 cut(s) 708
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 3 cut(s) 49, 515, 1001
Bsp19I CCATGG 1 cut(s) 773
BspACI CCGC 5 cut(s) 63, 229, 557, 705, 1123
BspANI GGCC 1 cut(s) 708
BspCNI CTCAG 1 cut(s) 102
BspFNI CGCG 2 cut(s) 381, 557
BspLI GGNNCC 4 cut(s) 51, 207, 338, 472
BspMI ACCTGC 2 cut(s) 790, 893
BspPI GGATC 4 cut(s) 44, 57, 523, 1009
BspT107I GGYRCC 2 cut(s) 336, 470
BsrDI GCAATG 2 cut(s) 846, 853
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 3 cut(s) 510, 949, 1052
BssECI CCNNGG 2 cut(s) 773, 922
BssMI GATC 3 cut(s) 49, 515, 1001
BssT1I CCWWGG 2 cut(s) 773, 922
Bst2UI CCWGG 1 cut(s) 1116
Bst4CI ACNGT 7 cut(s) 100, 154, 360, 406, 789, 811, 988
BstAPI GCANNNNNTGC 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 2 cut(s) 110, 581
BstDSI CCRYGG 1 cut(s) 773
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 4 cut(s) 129, 255, 376, 765
BstFNI CGCG 2 cut(s) 381, 557
BstHHI GCGC 3 cut(s) 383, 557, 846
BstKTI GATC 3 cut(s) 52, 518, 1004
BstMAI GTCTC 3 cut(s) 29, 82, 857
BstMBI GATC 3 cut(s) 49, 515, 1001
BstMWI GCNNNNNNNGC 4 cut(s) 242, 380, 452, 908
BstNI CCWGG 1 cut(s) 1116
BstNSI RCATGY 1 cut(s) 748
BstSCI CCNGG 2 cut(s) 207, 1114
BstUI CGCG 2 cut(s) 381, 557
BstV1I GCAGC 3 cut(s) 455, 486, 946
BstX2I RGATCY 2 cut(s) 49, 515
BstXI CCANNNNNNTGG 2 cut(s) 732, 998
BstYI RGATCY 2 cut(s) 49, 515
BsuI GTATCC 1 cut(s) 771
BsuRI GGCC 1 cut(s) 708
BtgI CCRYGG 1 cut(s) 773
BtrI CACGTC 1 cut(s) 1083
BtsCI GGATG 4 cut(s) 129, 255, 376, 765
BtsIMutI CAGTG 5 cut(s) 150, 402, 517, 785, 807
BveI ACCTGC 2 cut(s) 790, 893
Cac8I GCNNGC 1 cut(s) 348
CaiI CAGNNNCTG 1 cut(s) 452
CfoI GCGC 3 cut(s) 383, 557, 846
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 2 cut(s) 337, 790
CviAII CATG 9 cut(s) 238, 458, 478, 693, 738, 745, 774, 912, 933
CviJI RGCY 9 cut(s) 107, 499, 708, 857, 889, 948, 981, 1021, 1071
CviKI_1 RGCY 9 cut(s) 107, 499, 708, 857, 889, 948, 981, 1021, 1071
CviQI GTAC 2 cut(s) 337, 790
DdeI CTNAG 2 cut(s) 110, 581
DpnI GATC 3 cut(s) 51, 517, 1003
DpnII GATC 3 cut(s) 49, 515, 1001
Eco130I CCWWGG 2 cut(s) 773, 922
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 12
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 1114
EcoT14I CCWWGG 2 cut(s) 773, 922
ErhI CCWWGG 2 cut(s) 773, 922
Esp3I CGTCTC 1 cut(s) 857
FaeI CATG 9 cut(s) 241, 461, 481, 696, 741, 748, 777, 915, 936
FaqI GGGAC 2 cut(s) 434, 755
FatI CATG 9 cut(s) 237, 457, 477, 692, 737, 744, 773, 911, 932
FauNDI CATATG 2 cut(s) 576, 674
Fnu4HI GCNGC 4 cut(s) 444, 500, 706, 960
FokI GGATG 4 cut(s) 116, 242, 383, 772
Fsp4HI GCNGC 4 cut(s) 444, 500, 706, 960
FspBI CTAG 2 cut(s) 332, 971
FspI TGCGCA 1 cut(s) 845
GlaI GCGC 3 cut(s) 382, 556, 845
GluI GCNGC 4 cut(s) 444, 500, 706, 960
HaeIII GGCC 1 cut(s) 708
HapII CCGG 1 cut(s) 209
HhaI GCGC 3 cut(s) 383, 557, 846
Hin1II CATG 9 cut(s) 241, 461, 481, 696, 741, 748, 777, 915, 936
Hin6I GCGC 3 cut(s) 381, 555, 844
HinP1I GCGC 3 cut(s) 381, 555, 844
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HindIII AAGCTT 1 cut(s) 979
HinfI GANTC 3 cut(s) 55, 194, 506
HpaI GTTAAC 1 cut(s) 363
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 4 cut(s) 363, 402, 735, 792
Hpy188I TCNGA 5 cut(s) 54, 272, 297, 370, 1102
Hpy188III TCNNGA 2 cut(s) 600, 991
Hpy8I GTNNAC 4 cut(s) 363, 402, 735, 792
HpyAV CCTTC 3 cut(s) 143, 484, 1032
HpyCH4III ACNGT 7 cut(s) 100, 154, 360, 406, 789, 811, 988
HpyCH4IV ACGT 3 cut(s) 176, 285, 1082
HpyCH4V TGCA 5 cut(s) 41, 302, 346, 785, 902
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 380, 452, 908
HpyF3I CTNAG 2 cut(s) 110, 581
HpySE526I ACGT 3 cut(s) 176, 285, 1082
Hsp92II CATG 9 cut(s) 241, 461, 481, 696, 741, 748, 777, 915, 936
HspAI GCGC 3 cut(s) 381, 555, 844
KpnI GGTACC 1 cut(s) 340
KspAI GTTAAC 1 cut(s) 363
Kzo9I GATC 3 cut(s) 49, 515, 1001
LmnI GCTCC 3 cut(s) 126, 440, 689
Lsp1109I GCAGC 3 cut(s) 455, 486, 946
LweI GCATC 4 cut(s) 138, 361, 392, 750
MaeI CTAG 2 cut(s) 332, 971
MaeII ACGT 3 cut(s) 176, 285, 1082
MaeIII GTNAC 3 cut(s) 100, 167, 281
MalI GATC 3 cut(s) 51, 517, 1003
MboI GATC 3 cut(s) 49, 515, 1001
MboII GAAGA 1 cut(s) 18
MflI RGATCY 2 cut(s) 49, 515
MluCI AATT 3 cut(s) 44, 873, 1126
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 3 cut(s) 83, 955, 1037
MnlI CCTC 3 cut(s) 181, 272, 719
MseI TTAA 4 cut(s) 362, 720, 983, 1129
MslI CAYNNNNRTG 2 cut(s) 179, 730
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 209, 1116
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 1 cut(s) 1116
MvnI CGCG 2 cut(s) 381, 557
MwoI GCNNNNNNNGC 4 cut(s) 242, 380, 452, 908
NciI CCSGG 1 cut(s) 209
NcoI CCATGG 1 cut(s) 773
NdeI CATATG 2 cut(s) 576, 674
NdeII GATC 3 cut(s) 49, 515, 1001
NlaIII CATG 9 cut(s) 241, 461, 481, 696, 741, 748, 777, 915, 936
NlaIV GGNNCC 4 cut(s) 51, 207, 338, 472
NmuCI GTSAC 1 cut(s) 281
NsbI TGCGCA 1 cut(s) 845
NspI RCATGY 1 cut(s) 748
OliI CACNNNNGTG 1 cut(s) 179
PciI ACATGT 1 cut(s) 744
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 194, 506
PflMI CCANNNNNTGG 1 cut(s) 530
PkrI GCNGC 4 cut(s) 445, 501, 707, 961
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PscI ACATGT 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 1114
PspGI CCWGG 1 cut(s) 1114
PspN4I GGNNCC 4 cut(s) 51, 207, 338, 472
PspPI GGNCC 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 2 cut(s) 49, 515
RsaI GTAC 2 cut(s) 338, 791
RsaNI GTAC 2 cut(s) 337, 790
RseI CAYNNNNRTG 2 cut(s) 179, 730
SaqAI TTAA 4 cut(s) 362, 720, 983, 1129
SatI GCNGC 4 cut(s) 444, 500, 706, 960
Sau3AI GATC 3 cut(s) 49, 515, 1001
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 209, 1116
SetI ASST 9 cut(s) 179, 192, 283, 288, 342, 784, 907, 983, 1085
SfaNI GCATC 4 cut(s) 138, 361, 392, 750
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 179, 730
Sse9I AATT 3 cut(s) 44, 873, 1126
SsiI CCGC 5 cut(s) 63, 229, 557, 705, 1123
SspMI CTAG 2 cut(s) 332, 971
StyD4I CCNGG 2 cut(s) 207, 1114
StyI CCWWGG 2 cut(s) 773, 922
TaaI ACNGT 7 cut(s) 100, 154, 360, 406, 789, 811, 988
TaiI ACGT 3 cut(s) 179, 288, 1085
TasI AATT 3 cut(s) 44, 873, 1126
TatI WGTACW 1 cut(s) 789
TauI GCSGC 1 cut(s) 708
TfiI GAWTC 2 cut(s) 194, 506
Tru1I TTAA 4 cut(s) 362, 720, 983, 1129
Tru9I TTAA 4 cut(s) 362, 720, 983, 1129
TscAI CASTG 5 cut(s) 157, 409, 517, 792, 814
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 3 cut(s) 443, 499, 959
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 7 cut(s) 26, 99, 244, 466, 563, 1047, 1052
TspGWI ACGGA 1 cut(s) 1075
TspRI CASTG 5 cut(s) 157, 409, 517, 792, 814
Van91I CCANNNNNTGG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 205
XagI CCTNNNNNAGG 1 cut(s) 344
XceI RCATGY 1 cut(s) 748
XspI CTAG 2 cut(s) 332, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.