RchiOBHm_Chr7g0199801

EamA-like transporter family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
17828068 .. 17829361
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17881

Sequence Viewer

Length: 333 bp
ATGCAATCACAATTGTCTATGGTTGAAGCTATCATGGACCCTGCAACCTTTTTAGTGGTGTGGTTTATCATGTCATCAATTCCATTTCTGCCATTCATGTTTCAATCACGAAGTGATGTTCAGACCCGAAATGCAGGAATTGAGTTGGGGTTCTGGATCAGTCTAAGCTACCTTCTTGAGGCACTTGGTTACTTACATCTGATGCTGGCCGTGCATTGTTTATTTCCCTCTTTACAGGAAGCAAGCTCAAACTTAACTTTGAGCTATATTTCAGAGATGAGAAAACTGATCAAGAGGAAATCGACTGAAAGCAGAGGAGGGGGGAAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.45

Weight (kDa)

7.92

Isoelectric Point (pI)

61.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11940 FvH4_5g11940
malus_domestica MD16G1025900.v1.1
rosa_chinensis RchiOBHm_Chr7g0199801
rosa_laevigata RLG00000034533

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 207
AdeI CACNNNGTG 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 2 cut(s) 26, 104
AluBI AGCT 4 cut(s) 29, 168, 246, 264
AluI AGCT 4 cut(s) 29, 168, 246, 264
AlwI GGATC 1 cut(s) 164
AoxI GGCC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 37
AvaII GGWCC 1 cut(s) 37
BceAI ACGGC 1 cut(s) 194
BclI TGATCA 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 39
BmsI GCATC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 330
BshFI GGCC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 178
BsnI GGCC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 156, 288
BspANI GGCC 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 164
BssMI GATC 2 cut(s) 156, 288
BstC8I GCNNGC 2 cut(s) 207, 244
BstDEI CTNAG 1 cut(s) 164
BstENI CCTNNNNNAGG 1 cut(s) 176
BstKTI GATC 2 cut(s) 159, 291
BstMBI GATC 2 cut(s) 156, 288
BstMWI GCNNNNNNNGC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 209
Cac8I GCNNGC 2 cut(s) 207, 244
Cfr13I GGNCC 1 cut(s) 37
CviAII CATG 3 cut(s) 34, 70, 97
CviJI RGCY 5 cut(s) 29, 168, 209, 246, 264
CviKI_1 RGCY 5 cut(s) 29, 168, 209, 246, 264
DdeI CTNAG 1 cut(s) 164
DpnI GATC 2 cut(s) 158, 290
DpnII GATC 2 cut(s) 156, 288
DraIII CACNNNGTG 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 37
EcoNI CCTNNNNNAGG 1 cut(s) 176
FaeI CATG 3 cut(s) 37, 73, 100
FaiI YATR 6 cut(s) 20, 35, 71, 98, 267, 331
FatI CATG 3 cut(s) 33, 69, 96
FbaI TGATCA 1 cut(s) 288
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 3 cut(s) 37, 73, 100
Hpy188I TCNGA 3 cut(s) 123, 201, 274
Hpy188III TCNNGA 4 cut(s) 108, 154, 176, 292
HpyAV CCTTC 1 cut(s) 182
HpyCH4V TGCA 4 cut(s) 4, 44, 134, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 164
Hsp92II CATG 3 cut(s) 37, 73, 100
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 156, 288
LpnPI CCDG 5 cut(s) 54, 120, 139, 191, 221
LweI GCATC 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 158, 290
MboI GATC 2 cut(s) 156, 288
MfeI CAATTG 1 cut(s) 11
MluCI AATT 3 cut(s) 11, 78, 138
MnlI CCTC 5 cut(s) 172, 238, 288, 308, 311
MseI TTAA 1 cut(s) 254
MunI CAATTG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 211
NdeII GATC 2 cut(s) 156, 288
NlaIII CATG 3 cut(s) 37, 73, 100
NlaIV GGNNCC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 254
Sau3AI GATC 2 cut(s) 156, 288
Sau96I GGNCC 1 cut(s) 37
SetI ASST 6 cut(s) 31, 50, 170, 174, 248, 266
SfaNI GCATC 1 cut(s) 192
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 3 cut(s) 11, 78, 138
TaqI TCGA 1 cut(s) 302
TasI AATT 3 cut(s) 11, 78, 138
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.