RLG00000034533

EamA-like transporter family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
44443036 .. 44444957
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034533

Sequence Viewer

Length: 459 bp
ATGGTTGAAGCTATCATGGACCCTGCAACCTTTTTAGTGGTGCGGTTTATCATGTCATCAATTCCATTTATGCCATTCATGTTTCAATCACGAAGTGATGTTCAGACCCGAAATGCAGGAATTGAGTTGGGGTTCTGGATCAGTCTAGGCTACCTTCTTGAGGCACTTGGTTACTTACATCTGATGCTGGCCGTGCATCGTTTATTTCCCTCTTCACAGGAAGCAAGCTCAAACTTAACTTTGAGCTATATTACAGAGGAAAAGAATACATATATACCATGTCTTATATTAGATAGAGAGCACTTGGACGGATCGGTGCAGCTCTTGTGCTTGAGGAGGGGGGAAACTATAATTAAAACTCCAGTTCAGACTGTCCAAACCATCTTCCAAGAGTTGCAATTGTTAGAAGACCAAATGTTGGGACGCAATGTTGGTCTGGACTCTGGAGCAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

17.2

Weight (kDa)

5.1

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11940 FvH4_5g11940
malus_domestica MD16G1025900.v1.1
rosa_chinensis RchiOBHm_Chr7g0199801
rosa_laevigata RLG00000034533

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 418
AciI CCGC 1 cut(s) 43
AclWI GGATC 2 cut(s) 146, 319
AcoI YGGCCR 1 cut(s) 189
AdeI CACNNNGTG 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 160, 418
AgsI TTSAA 2 cut(s) 8, 86
AluBI AGCT 5 cut(s) 11, 228, 246, 322, 454
AluI AGCT 5 cut(s) 11, 228, 246, 322, 454
Alw21I GWGCWC 1 cut(s) 303
AlwI GGATC 2 cut(s) 146, 319
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 19
AvaII GGWCC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 176
BfaI CTAG 1 cut(s) 146
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 21
BmsI GCATC 2 cut(s) 174, 205
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 179, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 418
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 433
BseLI CCNNNNNNNGG 2 cut(s) 160, 418
BseMI GCAATG 1 cut(s) 433
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 349
BseXI GCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 303
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 160, 418
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 2 cut(s) 138, 311
BspACI CCGC 1 cut(s) 43
BspANI GGCC 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 2 cut(s) 146, 319
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 1 cut(s) 362
BssMI GATC 2 cut(s) 138, 311
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 189, 226
BstENI CCTNNNNNAGG 1 cut(s) 158
BstKTI GATC 2 cut(s) 141, 314
BstMBI GATC 2 cut(s) 138, 311
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 414
BsuRI GGCC 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 189, 226
Cfr13I GGNCC 1 cut(s) 19
CseI GACGC 1 cut(s) 432
CviAII CATG 4 cut(s) 16, 52, 79, 279
CviJI RGCY 7 cut(s) 11, 150, 191, 228, 246, 322, 454
CviKI_1 RGCY 7 cut(s) 11, 150, 191, 228, 246, 322, 454
DpnI GATC 2 cut(s) 140, 313
DpnII GATC 2 cut(s) 138, 311
DraIII CACNNNGTG 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 19
EcoNI CCTNNNNNAGG 1 cut(s) 158
FaeI CATG 4 cut(s) 19, 55, 82, 282
FaqI GGGAC 1 cut(s) 435
FatI CATG 4 cut(s) 15, 51, 78, 278
Fnu4HI GCNGC 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 320
FspBI CTAG 1 cut(s) 146
GluI GCNGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 1 cut(s) 191
HgaI GACGC 1 cut(s) 432
Hin1II CATG 4 cut(s) 19, 55, 82, 282
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 1 cut(s) 440
Hpy188I TCNGA 3 cut(s) 105, 183, 369
Hpy188III TCNNGA 5 cut(s) 90, 136, 158, 437, 444
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4V TGCA 5 cut(s) 26, 116, 196, 319, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 4 cut(s) 19, 55, 82, 282
Kzo9I GATC 2 cut(s) 138, 311
LmnI GCTCC 1 cut(s) 446
LpnPI CCDG 8 cut(s) 36, 102, 121, 173, 203, 375, 422, 429
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 2 cut(s) 174, 205
MaeI CTAG 1 cut(s) 146
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 140, 313
MboI GATC 2 cut(s) 138, 311
MboII GAAGA 3 cut(s) 204, 376, 419
MfeI CAATTG 1 cut(s) 398
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 4 cut(s) 60, 120, 351, 398
MlyI GAGTC 1 cut(s) 434
MnlI CCTC 5 cut(s) 154, 220, 250, 327, 330
MseI TTAA 2 cut(s) 236, 354
MunI CAATTG 1 cut(s) 398
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 2 cut(s) 138, 311
NlaIII CATG 4 cut(s) 19, 55, 82, 282
NlaIV GGNNCC 1 cut(s) 21
PflMI CCANNNNNTGG 1 cut(s) 418
PkrI GCNGC 1 cut(s) 321
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 236, 354
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 2 cut(s) 138, 311
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 434
SduI GDGCHC 1 cut(s) 303
SetI ASST 7 cut(s) 13, 32, 156, 230, 248, 324, 456
SfaNI GCATC 2 cut(s) 174, 205
SinI GGWCC 1 cut(s) 19
SmlI CTYRAG 2 cut(s) 158, 331
SmoI CTYRAG 2 cut(s) 158, 331
Sse9I AATT 4 cut(s) 60, 120, 351, 398
SsiI CCGC 1 cut(s) 43
SspMI CTAG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 373
TasI AATT 4 cut(s) 60, 120, 351, 398
Tru1I TTAA 2 cut(s) 236, 354
Tru9I TTAA 2 cut(s) 236, 354
TseI GCWGC 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 324
Van91I CCANNNNNTGG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 19
XagI CCTNNNNNAGG 1 cut(s) 158
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.