MD16G1025900.v1.1

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0021074
Physical Location & Seq
Reverse (-)
1846990 .. 1854149
7160 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1025900.v1.1.491

Sequence Viewer

Length: 240 bp
ATGGACCCGGCAGCCTTCACTATTGTGCGGTTTGCTGTGTCAGCCATTCCGTTCATCCCTTTTGTGTTCCAAGCTCGAGGTGATGCTCAGACATGTAAAGCAGGGATTGAGTTGGGTCCCTGGGTCAGTCTAGGGTATCTCATGCAGGCACTGGGATTGCAAACTTCAGATGCTGGTCGTGCATCGTTTCAGTCCATGTTCACTGTAGTTATAGTTCCCTTGCTTGATGGTATGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

80

Amino Acids

8.43

Weight (kDa)

4.78

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g11940 FvH4_5g11940
malus_domestica MD16G1025900.v1.1
rosa_chinensis RchiOBHm_Chr7g0199801
rosa_laevigata RLG00000034533

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 150
AflIII ACRYGT 1 cut(s) 92
AjnI CCWGG 1 cut(s) 119
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AlwNI CAGNNNCTG 2 cut(s) 151, 173
Ama87I CYCGRG 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 4, 116
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 75
AvaII GGWCC 2 cut(s) 4, 116
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 1 cut(s) 8
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 8, 121
Bme18I GGWCC 2 cut(s) 4, 116
BmeT110I CYCGRG 1 cut(s) 75
BmgT120I GGNCC 2 cut(s) 4, 116
BmiI GGNNCC 3 cut(s) 6, 117, 118
BmrFI CCNGG 2 cut(s) 8, 121
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 3 cut(s) 73, 160, 191
BmuI ACTGGG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 119, 120
Bse1I ACTGG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 119, 120
BseGI GGATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 75
BspACI CCGC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 100
BspHI TCATGA 1 cut(s) 236
BspLI GGNNCC 3 cut(s) 6, 117, 118
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 119, 120
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 41, 179
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 2 cut(s) 6, 119
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 149, 201
Cac8I GCNNGC 1 cut(s) 147
CaiI CAGNNNCTG 2 cut(s) 151, 173
CciI TCATGA 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 4, 116
CviAII CATG 4 cut(s) 93, 142, 196, 237
CviJI RGCY 3 cut(s) 14, 44, 74
CviKI_1 RGCY 3 cut(s) 14, 44, 74
DdeI CTNAG 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 4, 116
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 119
FaeI CATG 4 cut(s) 96, 145, 199, 240
FaiI YATR 6 cut(s) 94, 143, 197, 212, 233, 238
FaqI GGGAC 1 cut(s) 102
FatI CATG 4 cut(s) 92, 141, 195, 236
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 131
GluI GCNGC 1 cut(s) 12
HapII CCGG 1 cut(s) 8
Hin1II CATG 4 cut(s) 96, 145, 199, 240
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 2 cut(s) 90, 169
Hpy188III TCNNGA 1 cut(s) 237
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 3 cut(s) 145, 160, 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 179
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 4 cut(s) 96, 145, 199, 240
KflI GGGWCCC 1 cut(s) 116
LpnPI CCDG 7 cut(s) 21, 87, 106, 131, 133, 137, 159
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 3 cut(s) 73, 160, 191
MaeI CTAG 1 cut(s) 131
MnlI CCTC 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 8, 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 41, 179
NciI CCSGG 1 cut(s) 8
NlaIII CATG 4 cut(s) 96, 145, 199, 240
NlaIV GGNNCC 3 cut(s) 6, 117, 118
NspI RCATGY 1 cut(s) 96
OliI CACNNNNGTG 1 cut(s) 23
PaeR7I CTCGAG 1 cut(s) 75
PagI TCATGA 1 cut(s) 236
PasI CCCWGGG 1 cut(s) 120
PciI ACATGT 1 cut(s) 92
PkrI GCNGC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 3 cut(s) 6, 117, 118
PspPI GGNCC 2 cut(s) 4, 116
PspPPI RGGWCCY 1 cut(s) 116
PspXI VCTCGAGB 1 cut(s) 75
PsrI GAACNNNNNNTAC 2 cut(s) 198, 230
PstNI CAGNNNCTG 2 cut(s) 151, 173
RseI CAYNNNNRTG 1 cut(s) 23
SatI GCNGC 1 cut(s) 12
Sau96I GGNCC 2 cut(s) 4, 116
ScrFI CCNGG 2 cut(s) 8, 121
SetI ASST 2 cut(s) 76, 82
SfaNI GCATC 3 cut(s) 73, 160, 191
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 75
SinI GGWCC 2 cut(s) 4, 116
SlaI CTCGAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
SsiI CCGC 1 cut(s) 28
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 6, 119
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 76
TscAI CASTG 2 cut(s) 156, 208
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 2 cut(s) 156, 208
VpaK11BI GGWCC 2 cut(s) 4, 116
XceI RCATGY 1 cut(s) 96
XhoI CTCGAG 1 cut(s) 75
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.