FvH4_5g14161

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013674
Physical Location & Seq
Forward (+)
8001791 .. 8003352
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14161.t2

Sequence Viewer

Length: 1065 bp
ATGGAAGAAGGAAAGATATCCAACTCCAATCCAGAAAGTTCAGATAAAAAAAATGCTATCCATATGCTGCTTGTTTCATACCCTTTACAAGGACATGTTACACCATTCATAAAGTTGGCATACCTAATTGCTGGTCGCGGAGTCATGGTCACATTTGTCATAACAGAGTTTGCACATGCACGTCTGATGGCTGCGGAGCCAGACTTGGATAATGAGAGGAATAAGGTCAGGTACGTCGCAGTTCCTGATGGATTGTCAGAAGATGATGCACGGAATGATGAAGGTAAGTTGTTTCAGAGTATATCCAAAGTCATGCCTGGTCATCTAAGAGAAGTCTTAGAGAAGGTCAACATGGAGGGTAATCAGGTGACTTGTATCATAGCTGATCCAATGTTTGGGTGGGCTTTGGAGATTGCTGAAACGCTGAAGCTGAAGTGGGCGATCTTCTGGACTTCTGCCCCAGGAGTTTTGGCCTTGATACTTAACATTCCAAAGCTTATTAAGGATGGGATTATTGACACCAAGGGATCTTCAAAAATTGATGGGAAGGTTCAACTGTCACCAGACCTGCCACCACTGACTAGTGCCGACTTTCTGTGGAATTATTCAGGAAAGCAGTCTGGGGAGACCAACTTCCAATATTTCTCTGGCATTCAACGAAACATGAAGCGTTGTGGCTGGCTTCTGTGCAACTGGTTTCATGAGCTTAACCCCCATGTGTTGGCTCACCCATCAGTTGCTTGTTTTCTGACTCATTGTGGTTGGAACTCGATTATGGATGGCTTAAGCATGGGCGTCCCCTTCCTCTGTTGGCCATACTTTGCCGATCAGTTTTACAACCGGAGTTGCATCTGTAATGGCTATAAAGTTGGTCTGGCCTTGAGCCCAGATGAGTATGGAATTGTTACTAGGCATGAAATCAGAAGGAAACTGGACAGTTTGGTTGCCGATGATGGTATACGAGCCAATGCATTAAAGCTGAAGGAAATGGCTCTTCAGAGTATTAGTGAAGGAGGATCTTCTGCAAGGAATTTGGACAACTTCATTTCGCAGATGAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

355

Amino Acids

39.53

Weight (kDa)

6.32

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 266 - 440 7.9e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14061 FvH4_5g14161 FvH4_5g14161
malus_domestica MD06G1200500.v1.1
prunus_persica Prupe.5G203300_v2.0.a1
pyrus_communis pycom06g17710
rosa_chinensis RchiOBHm_Chr7g0182751
rosa_laevigata RLG00000005103
rosa_multiflora Rmu_sc0000014.1_g000032 Rmu_sc0024464.1_g000002
rosa_roxburghii Rroxscaffold_3G00271000 Rroxscaffold_5G00344510
rosa_rugosa Rorug06G0449900
rosa_samantha Rh7AG053700 Rh7BG053200 Rh7CG054800 Rh7DG053000
rosa_wichuraiana Rw7G004370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 576
AccB7I CCANNNNNTGG 2 cut(s) 395, 721
AccI GTMKAC 1 cut(s) 958
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 138, 194
AclWI GGATC 3 cut(s) 380, 535, 1024
AcoI YGGCCR 1 cut(s) 812
AcsI RAATTY 1 cut(s) 1030
AcuI CTGAAG 4 cut(s) 446, 452, 980, 1001
AcyI GRCGYC 1 cut(s) 795
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 3 cut(s) 89, 395, 721
AflII CTTAAG 1 cut(s) 784
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 3 cut(s) 534, 554, 656
AhlI ACTAGT 1 cut(s) 581
AjiI CACGTC 1 cut(s) 182
AjnI CCWGG 2 cut(s) 316, 460
AluBI AGCT 5 cut(s) 383, 430, 496, 706, 979
AluI AGCT 5 cut(s) 383, 430, 496, 706, 979
Alw26I GTCTC 1 cut(s) 620
AlwI GGATC 3 cut(s) 380, 535, 1024
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 3 cut(s) 471, 812, 876
ApeKI GCWGC 2 cut(s) 67, 191
ApoI RAATTY 1 cut(s) 1030
AsuHPI GGTGA 3 cut(s) 379, 552, 719
BalI TGGCCA 1 cut(s) 814
BanII GRGCYC 1 cut(s) 887
BbvI GCAGC 2 cut(s) 54, 178
BccI CCATC 7 cut(s) 181, 242, 500, 536, 739, 773, 947
BciT130I CCWGG 2 cut(s) 318, 462
BcoDI GTCTC 1 cut(s) 620
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 2 cut(s) 582, 909
BfrI CTTAAG 1 cut(s) 784
BfuAI ACCTGC 1 cut(s) 576
BisI GCNGC 2 cut(s) 68, 192
BlsI GCNGC 2 cut(s) 69, 193
Bme1390I CCNGG 2 cut(s) 318, 462
BmgBI CACGTC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 318, 462
BmsI GCATC 2 cut(s) 256, 858
BpuEI CTTGAG 1 cut(s) 901
BsaHI GRCGYC 1 cut(s) 795
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 2 cut(s) 460, 522
BsaWI WCCGGW 1 cut(s) 840
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 395, 721
Bse1I ACTGG 2 cut(s) 698, 936
BseBI CCWGG 2 cut(s) 318, 462
BseDI CCNNGG 2 cut(s) 460, 522
BseGI GGATG 2 cut(s) 511, 784
BseLI CCNNNNNNNGG 3 cut(s) 89, 395, 721
BseNI ACTGG 2 cut(s) 698, 936
BseXI GCAGC 2 cut(s) 54, 178
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 3 cut(s) 473, 814, 878
BsiSI CCGG 1 cut(s) 841
BslFI GGGAC 1 cut(s) 782
BslI CCNNNNNNNGG 3 cut(s) 89, 395, 721
BsmAI GTCTC 1 cut(s) 620
BsmFI GGGAC 1 cut(s) 782
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 3 cut(s) 473, 814, 878
Bso31I GGTCTC 1 cut(s) 620
Bsp1286I GDGCHC 1 cut(s) 887
Bsp143I GATC 5 cut(s) 385, 441, 527, 826, 1016
BspACI CCGC 2 cut(s) 138, 194
BspANI GGCC 3 cut(s) 473, 814, 878
BspFNI CGCG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 576
BspPI GGATC 3 cut(s) 380, 535, 1024
BspQI GCTCTTC 1 cut(s) 999
BspTI CTTAAG 1 cut(s) 784
BspTNI GGTCTC 1 cut(s) 620
BsrI ACTGG 2 cut(s) 698, 936
BssECI CCNNGG 2 cut(s) 460, 522
BssMI GATC 5 cut(s) 385, 441, 527, 826, 1016
BssNAI GTATAC 1 cut(s) 959
BssNI GRCGYC 1 cut(s) 795
BssT1I CCWWGG 1 cut(s) 522
Bst1107I GTATAC 1 cut(s) 959
Bst2UI CCWGG 2 cut(s) 318, 462
Bst4CI ACNGT 2 cut(s) 558, 938
Bst6I CTCTTC 1 cut(s) 999
BstACI GRCGYC 1 cut(s) 795
BstAFI CTTAAG 1 cut(s) 784
BstC8I GCNNGC 1 cut(s) 680
BstDEI CTNAG 2 cut(s) 326, 337
BstENI CCTNNNNNAGG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 511, 784
BstFNI CGCG 1 cut(s) 138
BstKTI GATC 5 cut(s) 388, 444, 530, 829, 1019
BstMAI GTCTC 1 cut(s) 620
BstMBI GATC 5 cut(s) 385, 441, 527, 826, 1016
BstMWI GCNNNNNNNGC 1 cut(s) 1057
BstNI CCWGG 2 cut(s) 318, 462
BstNSI RCATGY 2 cut(s) 98, 179
BstSCI CCNGG 2 cut(s) 316, 460
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 54, 178
BstX2I RGATCY 2 cut(s) 527, 1016
BstYI RGATCY 2 cut(s) 527, 1016
BstZ17I GTATAC 1 cut(s) 959
BsuRI GGCC 3 cut(s) 473, 814, 878
BtrI CACGTC 1 cut(s) 182
BtsCI GGATG 2 cut(s) 511, 784
BtsIMutI CAGTG 1 cut(s) 575
BveI ACCTGC 1 cut(s) 576
Cac8I GCNNGC 1 cut(s) 680
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 700
CseI GACGC 1 cut(s) 784
Csp6I GTAC 1 cut(s) 232
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 2 cut(s) 326, 337
DpnI GATC 5 cut(s) 387, 443, 529, 828, 1018
DpnII GATC 5 cut(s) 385, 441, 527, 826, 1016
EaeI YGGCCR 1 cut(s) 812
Eam1104I CTCTTC 1 cut(s) 999
EarI CTCTTC 1 cut(s) 999
Eco130I CCWWGG 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 887
Eco31I GGTCTC 1 cut(s) 620
Eco32I GATATC 1 cut(s) 18
Eco57I CTGAAG 4 cut(s) 446, 452, 980, 1001
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoRII CCWGG 2 cut(s) 316, 460
EcoRV GATATC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 522
EcoT22I ATGCAT 1 cut(s) 973
EcoT38I GRGCYC 1 cut(s) 887
ErhI CCWWGG 1 cut(s) 522
FaqI GGGAC 1 cut(s) 782
FauNDI CATATG 1 cut(s) 63
FblI GTMKAC 1 cut(s) 958
Fnu4HI GCNGC 2 cut(s) 68, 192
FokI GGATG 2 cut(s) 518, 791
FriOI GRGCYC 1 cut(s) 887
Fsp4HI GCNGC 2 cut(s) 68, 192
FspBI CTAG 2 cut(s) 582, 909
GluI GCNGC 2 cut(s) 68, 192
HaeIII GGCC 3 cut(s) 473, 814, 878
HapII CCGG 1 cut(s) 841
HgaI GACGC 1 cut(s) 784
Hin1I GRCGYC 1 cut(s) 795
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 2 cut(s) 141, 751
HpaII CCGG 1 cut(s) 841
HphI GGTGA 3 cut(s) 379, 552, 719
Hpy166II GTNNAC 2 cut(s) 349, 959
Hpy188I TCNGA 7 cut(s) 43, 186, 259, 297, 750, 923, 999
Hpy188III TCNNGA 5 cut(s) 32, 245, 448, 609, 701
Hpy8I GTNNAC 2 cut(s) 349, 959
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 7 cut(s) 275, 337, 541, 811, 918, 976, 1004
HpyCH4III ACNGT 2 cut(s) 558, 938
HpyCH4IV ACGT 2 cut(s) 181, 234
HpyCH4V TGCA 7 cut(s) 173, 179, 269, 690, 849, 971, 1025
HpyF10VI GCNNNNNNNGC 1 cut(s) 1057
HpyF3I CTNAG 2 cut(s) 326, 337
HpySE526I ACGT 2 cut(s) 181, 234
Hsp92I GRCGYC 1 cut(s) 795
Kzo9I GATC 5 cut(s) 385, 441, 527, 826, 1016
LguI GCTCTTC 1 cut(s) 999
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 2 cut(s) 54, 178
LweI GCATC 2 cut(s) 256, 858
MaeI CTAG 2 cut(s) 582, 909
MaeII ACGT 2 cut(s) 181, 234
MaeIII GTNAC 5 cut(s) 97, 148, 367, 558, 904
MalI GATC 5 cut(s) 387, 443, 529, 828, 1018
MboI GATC 5 cut(s) 385, 441, 527, 826, 1016
MboII GAAGA 6 cut(s) 17, 272, 436, 522, 986, 1011
MflI RGATCY 2 cut(s) 527, 1016
MhlI GDGCHC 1 cut(s) 887
MlsI TGGCCA 1 cut(s) 814
MluCI AATT 5 cut(s) 126, 537, 601, 900, 1030
MluNI TGGCCA 1 cut(s) 814
MlyI GAGTC 2 cut(s) 150, 745
MmeI TCCRAC 2 cut(s) 45, 743
MnlI CCTC 4 cut(s) 210, 349, 815, 1007
Mox20I TGGCCA 1 cut(s) 814
Mph1103I ATGCAT 1 cut(s) 973
MscI TGGCCA 1 cut(s) 814
MseI TTAA 5 cut(s) 483, 501, 708, 785, 974
Msp20I TGGCCA 1 cut(s) 814
MspCI CTTAAG 1 cut(s) 784
MspI CCGG 1 cut(s) 841
MspR9I CCNGG 2 cut(s) 318, 462
Mva1269I GAATGC 1 cut(s) 651
MvaI CCWGG 2 cut(s) 318, 462
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 1057
NdeI CATATG 1 cut(s) 63
NdeII GATC 5 cut(s) 385, 441, 527, 826, 1016
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 3 cut(s) 148, 367, 558
NsiI ATGCAT 1 cut(s) 973
NspI RCATGY 2 cut(s) 98, 179
PagI TCATGA 1 cut(s) 700
PciI ACATGT 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 999
PctI GAATGC 1 cut(s) 651
PflMI CCANNNNNTGG 2 cut(s) 395, 721
PkrI GCNGC 2 cut(s) 69, 193
PleI GAGTC 2 cut(s) 149, 745
PpsI GAGTC 2 cut(s) 149, 745
PscI ACATGT 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 316, 460
PspGI CCWGG 2 cut(s) 316, 460
PspN4I GGNNCC 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 2 cut(s) 527, 1016
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SapI GCTCTTC 1 cut(s) 999
SaqAI TTAA 5 cut(s) 483, 501, 708, 785, 974
SatI GCNGC 2 cut(s) 68, 192
Sau3AI GATC 5 cut(s) 385, 441, 527, 826, 1016
SchI GAGTC 2 cut(s) 150, 745
ScrFI CCNGG 2 cut(s) 318, 462
SduI GDGCHC 1 cut(s) 887
SfaNI GCATC 2 cut(s) 256, 858
SmlI CTYRAG 2 cut(s) 784, 880
SmoI CTYRAG 2 cut(s) 784, 880
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 5 cut(s) 126, 537, 601, 900, 1030
SsiI CCGC 2 cut(s) 138, 194
SspI AATATT 1 cut(s) 641
SspMI CTAG 2 cut(s) 582, 909
StyD4I CCNGG 2 cut(s) 316, 460
StyI CCWWGG 1 cut(s) 522
TaaI ACNGT 2 cut(s) 558, 938
TaiI ACGT 2 cut(s) 184, 237
TaqI TCGA 1 cut(s) 770
TasI AATT 5 cut(s) 126, 537, 601, 900, 1030
Tru1I TTAA 5 cut(s) 483, 501, 708, 785, 974
Tru9I TTAA 5 cut(s) 483, 501, 708, 785, 974
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 3 cut(s) 148, 367, 558
TseI GCWGC 2 cut(s) 67, 191
Tsp45I GTSAC 3 cut(s) 148, 367, 558
TspDTI ATGAA 7 cut(s) 66, 97, 294, 680, 689, 930, 1033
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 1 cut(s) 582
Van91I CCANNNNNTGG 2 cut(s) 395, 721
Vha464I CTTAAG 1 cut(s) 784
XagI CCTNNNNNAGG 1 cut(s) 87
XapI RAATTY 1 cut(s) 1030
XceI RCATGY 2 cut(s) 98, 179
XcmI CCANNNNNNNNNTGG 2 cut(s) 396, 644
XmiI GTMKAC 1 cut(s) 958
XspI CTAG 2 cut(s) 582, 909
Zsp2I ATGCAT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.