Rroxscaffold_5G00344510

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013674
Physical Location & Seq
Reverse (-)
14601149 .. 14602712
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344510.1

Sequence Viewer

Length: 1398 bp
ATGGAAGAAAGACAGCTATCCCGCTTTAATCTGGAAAGTTCAGATCAAGAAAATGCTATCCATATGCTGCTTGTTCCATACCCTTTACAAGGACATATTACACCATTCATAAAGTTGGCATACCTAATTTCTGGTCGTGGAATCATGGTCACTCTTGTCATAACAGAGTTTGCACATGCACGTATGATGGCGGCAGAGCCAGAATTGGATAATGAGCGGTACAAGGTCAGGTACATCACAGTTCCTGATGGATTGTCAGAAGATGATGCACGGAATGATGAAGGTAAACTGGCACAGAGTATATCCAAAGTCATGCCTGGTCATTTGAGAGAAGTGTTAGAGAAGGTCAACATGGAGGGTAATCAGGTGACTTGTGTCATAGCTGATCCAATGTTTGGGTGGGCTTTGGAGATTGCTGAAACGATGAAGCTCAAGTTGGCAATGTTCTGGCCTTCTGCCCCAGGAGTTTTGGCCTTGATACTTACCATTCCAAAGCTTATTGAGGATGGGATTATTGACACCAAGGGATCTTCGAAAATTGATGGGAAGGTTCAACTGTCACCAGACCTGCCACCTCTGACTAGTGCCGACTTTCTGTGGAATTTTTCAGGAAACCAGTCTGCCGAGGCCATGTTCCAATATTTCTTAGGCATTCAACAAAACATGAAGCGTTCTGGCTGGCTTCTGTGCAACTGGTTTCATGGGCTTAACCCCCTTGTTGGTAATTTAGTCCCACACATGTTTTCAGTTGGCCCATTACTTGCAATCGGAAAACCTGCTGCAAACCTTTGGCCAGAGGACTCGACTTGCTTGAGCTGGCTCAACAAACAACCTGCTAGATCAGTCATTTATGTTGCATTTGGAAGCATCTCAGTATTCAGCCAGCACCAGATGGATGAATTAGCATTAGGCATTGAACTTGTTGGTCGACCATTCTTATGGGTTAACCGGTCAGACCTCATCAAAGGCGGTTCTTCCAAATACCCAAATGGGTATGAAGAGAGAGTGGCGAACCAAGGCAAGATTGTTGGGTGGGCACCCCAAGAAAAGGTGTTGGCTCACCCATCTATTGCTTGTTTCCTGACTCATTGTGGTTGGAACTCGACCATGGATGGCTTAAGCATGGGCGTCCCCTTCCTCTGTTGGCCTTACTTTGCCGATCAGTTTTACAACCGGAGTTGCATCTGTAACGGCTATAAAGTTGGTCTGTCCGTAAGCCCGGATGAATATGGAATTGTTACAAGGCATGAAATCAGAAGGAAATTGGATAGTTTGGTTGCTGATGATGGTATAAGAGCCAATGCATTAAAGCTCAAAGAAATGGCTGAACAGAGTATCAGTGAAGGAGGATCTTCTGTAAGGAATTTGGACAACTTCATTCTACAGATGAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

465

Amino Acids

51.84

Weight (kDa)

5.75

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 272 - 441 2e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14061 FvH4_5g14161 FvH4_5g14161
malus_domestica MD06G1200500.v1.1
prunus_persica Prupe.5G203300_v2.0.a1
pyrus_communis pycom06g17710
rosa_chinensis RchiOBHm_Chr7g0182751
rosa_laevigata RLG00000005103
rosa_multiflora Rmu_sc0000014.1_g000032 Rmu_sc0024464.1_g000002
rosa_roxburghii Rroxscaffold_3G00271000 Rroxscaffold_5G00344510
rosa_rugosa Rorug06G0449900
rosa_samantha Rh7AG053700 Rh7BG053200 Rh7CG054800 Rh7DG053000
rosa_wichuraiana Rw7G004370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 576, 784, 841
AccB1I GGYRCC 1 cut(s) 1036
AccB7I CCANNNNNTGG 1 cut(s) 395
AccBSI CCGCTC 1 cut(s) 217
AccI GTMKAC 1 cut(s) 928
AciI CCGC 4 cut(s) 22, 191, 217, 969
AclWI GGATC 3 cut(s) 380, 535, 1357
AcoI YGGCCR 1 cut(s) 791
AcsI RAATTY 2 cut(s) 601, 1363
AcyI GRCGYC 1 cut(s) 1128
AfaI GTAC 2 cut(s) 221, 233
AfiI CCNNNNNNNGG 4 cut(s) 89, 395, 719, 1048
AflII CTTAAG 1 cut(s) 1117
AflIII ACRYGT 1 cut(s) 738
AgeI ACCGGT 1 cut(s) 948
AgsI TTSAA 3 cut(s) 554, 656, 917
AhlI ACTAGT 1 cut(s) 581
AjnI CCWGG 2 cut(s) 316, 460
AjuI GAANNNNNNNTTGG 2 cut(s) 419, 451
AluBI AGCT 6 cut(s) 16, 383, 430, 496, 816, 1312
AluI AGCT 6 cut(s) 16, 383, 430, 496, 816, 1312
AlwI GGATC 3 cut(s) 380, 535, 1357
AlwNI CAGNNNCTG 1 cut(s) 245
AoxI GGCC 6 cut(s) 449, 471, 627, 751, 791, 1145
ApeKI GCWGC 2 cut(s) 67, 779
ApoI RAATTY 2 cut(s) 601, 1363
AsiGI ACCGGT 1 cut(s) 948
AspS9I GGNCC 1 cut(s) 752
AsuC2I CCSGG 1 cut(s) 1220
AsuHPI GGTGA 3 cut(s) 379, 552, 1052
AsuII TTCGAA 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 1039
BalI TGGCCA 1 cut(s) 793
BanI GGYRCC 1 cut(s) 1036
BbvI GCAGC 2 cut(s) 54, 766
BccI CCATC 8 cut(s) 181, 242, 500, 536, 886, 1072, 1106, 1280
BceAI ACGGC 1 cut(s) 1207
BciT130I CCWGG 2 cut(s) 318, 462
BcnI CCSGG 1 cut(s) 1220
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 2 cut(s) 582, 837
BfmI CTRYAG 1 cut(s) 1382
BfrI CTTAAG 1 cut(s) 1117
BfuAI ACCTGC 3 cut(s) 576, 784, 841
BisI GCNGC 3 cut(s) 68, 192, 780
BlsI GCNGC 3 cut(s) 69, 193, 781
Bme1390I CCNGG 3 cut(s) 318, 462, 1220
BmgT120I GGNCC 1 cut(s) 752
BmiI GGNNCC 1 cut(s) 1038
BmrFI CCNGG 3 cut(s) 318, 462, 1220
BmsI GCATC 3 cut(s) 256, 876, 1191
BoxI GACNNNNGTC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 533
BpuEI CTTGAG 2 cut(s) 416, 832
BpuMI CCSGG 1 cut(s) 1220
BsaAI YACGTR 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 1128
BsaJI CCNNGG 5 cut(s) 460, 522, 624, 1015, 1107
BsaWI WCCGGW 2 cut(s) 948, 1173
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 395, 719, 1048
Bse118I RCCGGY 1 cut(s) 948
Bse1I ACTGG 3 cut(s) 294, 616, 698
Bse3DI GCAATG 1 cut(s) 447
BseBI CCWGG 2 cut(s) 318, 462
BseDI CCNNGG 5 cut(s) 460, 522, 624, 1015, 1107
BseGI GGATG 4 cut(s) 511, 901, 1117, 1228
BseLI CCNNNNNNNGG 4 cut(s) 89, 395, 719, 1048
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 3 cut(s) 294, 616, 698
BseSI GKGCMC 1 cut(s) 1039
BseXI GCAGC 2 cut(s) 54, 766
BshFI GGCC 6 cut(s) 451, 473, 629, 753, 793, 1147
BshNI GGYRCC 1 cut(s) 1036
BshTI ACCGGT 1 cut(s) 948
BsiSI CCGG 3 cut(s) 949, 1174, 1220
BslFI GGGAC 2 cut(s) 716, 1115
BslI CCNNNNNNNGG 4 cut(s) 89, 395, 719, 1048
BsmFI GGGAC 2 cut(s) 716, 1115
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 6 cut(s) 451, 473, 629, 753, 793, 1147
Bsp119I TTCGAA 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 1039
Bsp143I GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
Bsp19I CCATGG 1 cut(s) 1107
BspACI CCGC 4 cut(s) 22, 191, 217, 969
BspANI GGCC 6 cut(s) 451, 473, 629, 753, 793, 1147
BspCNI CTCAG 1 cut(s) 884
BspLI GGNNCC 1 cut(s) 1038
BspMI ACCTGC 3 cut(s) 576, 784, 841
BspPI GGATC 3 cut(s) 380, 535, 1357
BspT104I TTCGAA 1 cut(s) 533
BspT107I GGYRCC 1 cut(s) 1036
BspTI CTTAAG 1 cut(s) 1117
BsrBI CCGCTC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 447
BsrFI RCCGGY 1 cut(s) 948
BsrI ACTGG 3 cut(s) 294, 616, 698
BssAI RCCGGY 1 cut(s) 948
BssECI CCNNGG 5 cut(s) 460, 522, 624, 1015, 1107
BssMI GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
BssNI GRCGYC 1 cut(s) 1128
BssT1I CCWWGG 3 cut(s) 522, 1015, 1107
Bst2UI CCWGG 2 cut(s) 318, 462
Bst4CI ACNGT 2 cut(s) 241, 558
Bst6I CTCTTC 1 cut(s) 993
BstACI GRCGYC 1 cut(s) 1128
BstAFI CTTAAG 1 cut(s) 1117
BstBAI YACGTR 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 3 cut(s) 680, 818, 884
BstDEI CTNAG 2 cut(s) 646, 871
BstDSI CCRYGG 1 cut(s) 1107
BstENI CCTNNNNNAGG 1 cut(s) 87
BstF5I GGATG 4 cut(s) 511, 901, 1117, 1228
BstKTI GATC 6 cut(s) 46, 388, 530, 842, 1162, 1352
BstMBI GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
BstNI CCWGG 2 cut(s) 318, 462
BstNSI RCATGY 2 cut(s) 179, 742
BstPAI GACNNNNGTC 1 cut(s) 374
BstSCI CCNGG 3 cut(s) 316, 460, 1218
BstSFI CTRYAG 1 cut(s) 1382
BstSLI GKGCMC 1 cut(s) 1039
BstV1I GCAGC 2 cut(s) 54, 766
BstX2I RGATCY 2 cut(s) 527, 1349
BstXI CCANNNNNNTGG 1 cut(s) 939
BstYI RGATCY 2 cut(s) 527, 1349
BsuRI GGCC 6 cut(s) 451, 473, 629, 753, 793, 1147
BtgI CCRYGG 1 cut(s) 1107
BtsCI GGATG 4 cut(s) 511, 901, 1117, 1228
BtsIMutI CAGTG 1 cut(s) 1345
BveI ACCTGC 3 cut(s) 576, 784, 841
Cac8I GCNNGC 3 cut(s) 680, 818, 884
CaiI CAGNNNCTG 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 948
Cfr13I GGNCC 1 cut(s) 752
CseI GACGC 1 cut(s) 1117
Csp6I GTAC 2 cut(s) 220, 232
CspAI ACCGGT 1 cut(s) 948
CviQI GTAC 2 cut(s) 220, 232
DdeI CTNAG 2 cut(s) 646, 871
DpnI GATC 6 cut(s) 45, 387, 529, 841, 1161, 1351
DpnII GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
EaeI YGGCCR 1 cut(s) 791
Eam1104I CTCTTC 1 cut(s) 993
EarI CTCTTC 1 cut(s) 993
Eco130I CCWWGG 3 cut(s) 522, 1015, 1107
EcoNI CCTNNNNNAGG 1 cut(s) 87
EcoRII CCWGG 2 cut(s) 316, 460
EcoT14I CCWWGG 3 cut(s) 522, 1015, 1107
EcoT22I ATGCAT 1 cut(s) 1306
ErhI CCWWGG 3 cut(s) 522, 1015, 1107
FaqI GGGAC 2 cut(s) 716, 1115
FauI CCCGC 1 cut(s) 29
FauNDI CATATG 1 cut(s) 63
FblI GTMKAC 1 cut(s) 928
Fnu4HI GCNGC 3 cut(s) 68, 192, 780
FokI GGATG 4 cut(s) 518, 908, 1124, 1235
Fsp4HI GCNGC 3 cut(s) 68, 192, 780
FspBI CTAG 2 cut(s) 582, 837
GluI GCNGC 3 cut(s) 68, 192, 780
HaeIII GGCC 6 cut(s) 451, 473, 629, 753, 793, 1147
HapII CCGG 3 cut(s) 949, 1174, 1220
HgaI GACGC 1 cut(s) 1117
Hin1I GRCGYC 1 cut(s) 1128
HincII GTYRAC 3 cut(s) 349, 929, 946
HindII GTYRAC 3 cut(s) 349, 929, 946
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 3 cut(s) 141, 800, 1084
HpaI GTTAAC 1 cut(s) 946
HpaII CCGG 3 cut(s) 949, 1174, 1220
HphI GGTGA 3 cut(s) 379, 552, 1052
Hpy166II GTNNAC 4 cut(s) 287, 349, 929, 946
Hpy188I TCNGA 6 cut(s) 43, 259, 579, 770, 955, 1256
Hpy188III TCNNGA 5 cut(s) 32, 47, 245, 609, 1081
Hpy8I GTNNAC 4 cut(s) 287, 349, 929, 946
HpyAV CCTTC 7 cut(s) 275, 337, 462, 541, 1144, 1251, 1337
HpyCH4III ACNGT 2 cut(s) 241, 558
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 9 cut(s) 173, 179, 269, 690, 764, 782, 857, 1182, 1304
HpyF3I CTNAG 2 cut(s) 646, 871
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 1128
KspAI GTTAAC 1 cut(s) 946
Kzo9I GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
Lsp1109I GCAGC 2 cut(s) 54, 766
LweI GCATC 3 cut(s) 256, 876, 1191
MaeI CTAG 2 cut(s) 582, 837
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 5 cut(s) 148, 367, 558, 1187, 1237
MalI GATC 6 cut(s) 45, 387, 529, 841, 1161, 1351
MbiI CCGCTC 1 cut(s) 217
MboI GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
MboII GAAGA 6 cut(s) 17, 272, 522, 966, 1010, 1344
MflI RGATCY 2 cut(s) 527, 1349
MhlI GDGCHC 1 cut(s) 1039
MlsI TGGCCA 1 cut(s) 793
MluCI AATT 9 cut(s) 126, 203, 537, 601, 724, 899, 1233, 1262, 1363
MluNI TGGCCA 1 cut(s) 793
MlyI GAGTC 2 cut(s) 794, 1078
MmeI TCCRAC 1 cut(s) 1076
MnlI CCTC 8 cut(s) 349, 496, 585, 619, 790, 968, 1148, 1340
Mox20I TGGCCA 1 cut(s) 793
Mph1103I ATGCAT 1 cut(s) 1306
MscI TGGCCA 1 cut(s) 793
MseI TTAA 5 cut(s) 27, 708, 945, 1118, 1307
MslI CAYNNNNRTG 1 cut(s) 937
Msp20I TGGCCA 1 cut(s) 793
MspCI CTTAAG 1 cut(s) 1117
MspI CCGG 3 cut(s) 949, 1174, 1220
MspR9I CCNGG 3 cut(s) 318, 462, 1220
Mva1269I GAATGC 1 cut(s) 651
MvaI CCWGG 2 cut(s) 318, 462
NciI CCSGG 1 cut(s) 1220
NcoI CCATGG 1 cut(s) 1107
NdeI CATATG 1 cut(s) 63
NdeII GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
NlaIV GGNNCC 1 cut(s) 1038
NmeAIII GCCGAG 1 cut(s) 649
NmuCI GTSAC 3 cut(s) 148, 367, 558
NsiI ATGCAT 1 cut(s) 1306
NspI RCATGY 2 cut(s) 179, 742
NspV TTCGAA 1 cut(s) 533
PciI ACATGT 1 cut(s) 738
PctI GAATGC 1 cut(s) 651
PfeI GAWTC 1 cut(s) 141
PflMI CCANNNNNTGG 1 cut(s) 395
PinAI ACCGGT 1 cut(s) 948
PkrI GCNGC 3 cut(s) 69, 193, 781
PleI GAGTC 2 cut(s) 794, 1078
PpsI GAGTC 2 cut(s) 794, 1078
Ppu21I YACGTR 1 cut(s) 182
PscI ACATGT 1 cut(s) 738
PshAI GACNNNNGTC 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 316, 460
PspGI CCWGG 2 cut(s) 316, 460
PspN4I GGNNCC 1 cut(s) 1038
PspPI GGNCC 1 cut(s) 752
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 2 cut(s) 527, 1349
RsaI GTAC 2 cut(s) 221, 233
RsaNI GTAC 2 cut(s) 220, 232
RseI CAYNNNNRTG 1 cut(s) 937
SalI GTCGAC 1 cut(s) 927
SaqAI TTAA 5 cut(s) 27, 708, 945, 1118, 1307
SatI GCNGC 3 cut(s) 68, 192, 780
Sau3AI GATC 6 cut(s) 43, 385, 527, 839, 1159, 1349
Sau96I GGNCC 1 cut(s) 752
SchI GAGTC 2 cut(s) 794, 1078
ScrFI CCNGG 3 cut(s) 318, 462, 1220
SduI GDGCHC 1 cut(s) 1039
SfaNI GCATC 3 cut(s) 256, 876, 1191
SfcI CTRYAG 1 cut(s) 1382
SfuI TTCGAA 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 937
SmlI CTYRAG 3 cut(s) 431, 811, 1117
SmoI CTYRAG 3 cut(s) 431, 811, 1117
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 9 cut(s) 126, 203, 537, 601, 724, 899, 1233, 1262, 1363
SsiI CCGC 4 cut(s) 22, 191, 217, 969
SspI AATATT 1 cut(s) 641
SspMI CTAG 2 cut(s) 582, 837
StyD4I CCNGG 3 cut(s) 316, 460, 1218
StyI CCWWGG 3 cut(s) 522, 1015, 1107
TaaI ACNGT 2 cut(s) 241, 558
TaiI ACGT 1 cut(s) 184
TaqI TCGA 4 cut(s) 533, 803, 928, 1103
TasI AATT 9 cut(s) 126, 203, 537, 601, 724, 899, 1233, 1262, 1363
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 5 cut(s) 27, 708, 945, 1118, 1307
Tru9I TTAA 5 cut(s) 27, 708, 945, 1118, 1307
TscAI CASTG 1 cut(s) 1345
TseFI GTSAC 3 cut(s) 148, 367, 558
TseI GCWGC 2 cut(s) 67, 779
Tsp45I GTSAC 3 cut(s) 148, 367, 558
TspGWI ACGGA 2 cut(s) 286, 1201
TspRI CASTG 1 cut(s) 1345
Van91I CCANNNNNTGG 1 cut(s) 395
Vha464I CTTAAG 1 cut(s) 1117
XagI CCTNNNNNAGG 1 cut(s) 87
XapI RAATTY 2 cut(s) 601, 1363
XceI RCATGY 2 cut(s) 179, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 928
XspI CTAG 2 cut(s) 582, 837
Zsp2I ATGCAT 1 cut(s) 1306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.