FvH4_5g14220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018441
Physical Location & Seq
Reverse (-)
8021191 .. 8021643
453 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14220.t1

Sequence Viewer

Length: 453 bp
ATGGGAGAGGCTTCAAAACAAGTAGATCTTGCTACTGTTCTAGGAATCTCAATCAAGGAAGATCAGACACAAAGAAGTGAAACAACAACAGGTCATCAAACCCAGACAGTTGATACTACCCCAATATGGAAACCAAGTCCCCAGCACAATGGCAGCACGCTGTACGATTCATTTGAGCTTCGAGCTGTGACTCTACAACTTAACAGAGCGATTCAAGGCTCGAGAGCACCCACTTCGCCTCTCTACATGTACTGCTTCAATTCACCCTTGTACAGAGAAGGTTTGGATCGGATGCGCAAAGCAAGCGTTAAGGCACGAAAGAAAATTTTGTGCTCGGAGGCGTCTACAGCCTGCGAGAGAAAGTCGAGCACAGAGGCTACAAAGGGGTTTGTGTCAAGAGCATGGAATAAAGTGAAGCAAGGTCTTGTGAGGAACAAGCAAAGGAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.84

Weight (kDa)

9.92

Isoelectric Point (pI)

47.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14220
prunus_persica Prupe.5G202900_v2.0.a1
rosa_laevigata RLG00000005107
rosa_multiflora Rmu_sc0000014.1_g000039
rosa_roxburghii Rroxscaffold_3G00271050
rosa_rugosa Rorug06G0449500
rosa_samantha Rh7AG053200 Rh7BG052800 Rh7CG054400 Rh7DG052600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 296
AccI GTMKAC 1 cut(s) 344
AclWI GGATC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 341
AfaI GTAC 3 cut(s) 164, 251, 272
AfiI CCNNNNNNNGG 1 cut(s) 126
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 3 cut(s) 15, 215, 259
AluBI AGCT 2 cut(s) 178, 185
AluI AGCT 2 cut(s) 178, 185
Alw21I GWGCWC 3 cut(s) 229, 335, 371
AlwI GGATC 1 cut(s) 294
Ama87I CYCGRG 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 324
AspLEI GCGC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 255
AvaI CYCGRG 1 cut(s) 220
Bbv12I GWGCWC 3 cut(s) 229, 335, 371
BbvI GCAGC 1 cut(s) 165
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 345
BglII AGATCT 1 cut(s) 25
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 220
BmsI GCATC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 341
Bsc4I CCNNNNNNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 165
BseYI CCCAGC 1 cut(s) 141
BsiHKAI GWGCWC 3 cut(s) 229, 335, 371
BsiHKCI CYCGRG 1 cut(s) 220
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 220
Bsp1286I GDGCHC 3 cut(s) 229, 335, 371
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 3 cut(s) 25, 61, 286
BspPI GGATC 1 cut(s) 294
BsrGI TGTACA 1 cut(s) 270
BssMI GATC 3 cut(s) 25, 61, 286
BssNI GRCGYC 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 37, 109
BstACI GRCGYC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 270
BstC8I GCNNGC 3 cut(s) 158, 304, 352
BstF5I GGATG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 3 cut(s) 28, 64, 289
BstMBI GATC 3 cut(s) 25, 61, 286
BstMWI GCNNNNNNNGC 2 cut(s) 303, 347
BstNSI RCATGY 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 1 cut(s) 25
BtsCI GGATG 1 cut(s) 297
Cac8I GCNNGC 3 cut(s) 158, 304, 352
CfoI GCGC 1 cut(s) 297
CseI GACGC 1 cut(s) 330
Csp6I GTAC 3 cut(s) 163, 250, 271
CviAII CATG 2 cut(s) 247, 402
CviJI RGCY 6 cut(s) 11, 178, 185, 219, 350, 377
CviKI_1 RGCY 6 cut(s) 11, 178, 185, 219, 350, 377
CviQI GTAC 3 cut(s) 163, 250, 271
DpnI GATC 3 cut(s) 27, 63, 288
DpnII GATC 3 cut(s) 25, 61, 286
Eco88I CYCGRG 1 cut(s) 220
FaeI CATG 2 cut(s) 250, 405
FaiI YATR 3 cut(s) 127, 248, 403
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 123
FatI CATG 2 cut(s) 246, 401
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 1 cut(s) 304
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 1 cut(s) 41
FspI TGCGCA 1 cut(s) 296
GlaI GCGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 154
GsaI CCCAGC 1 cut(s) 145
HgaI GACGC 1 cut(s) 330
HhaI GCGC 1 cut(s) 297
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 2 cut(s) 250, 405
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HinfI GANTC 4 cut(s) 45, 167, 190, 211
HphI GGTGA 1 cut(s) 255
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 3 cut(s) 66, 291, 337
Hpy188III TCNNGA 2 cut(s) 222, 396
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 2 cut(s) 37, 109
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 347
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 2 cut(s) 250, 405
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 3 cut(s) 25, 61, 286
LpnPI CCDG 4 cut(s) 75, 116, 155, 364
Lsp1109I GCAGC 1 cut(s) 165
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 187
MalI GATC 3 cut(s) 27, 63, 288
MboI GATC 3 cut(s) 25, 61, 286
MboII GAAGA 1 cut(s) 71
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 3 cut(s) 229, 335, 371
MluCI AATT 2 cut(s) 259, 324
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 4 cut(s) 249, 331, 367, 423
MseI TTAA 2 cut(s) 201, 309
MwoI GCNNNNNNNGC 2 cut(s) 303, 347
NdeII GATC 3 cut(s) 25, 61, 286
NlaIII CATG 2 cut(s) 250, 405
NmuCI GTSAC 1 cut(s) 187
NsbI TGCGCA 1 cut(s) 296
NspI RCATGY 1 cut(s) 250
PaeR7I CTCGAG 1 cut(s) 220
PciI ACATGT 1 cut(s) 246
PfeI GAWTC 3 cut(s) 45, 167, 211
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PscI ACATGT 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 3 cut(s) 164, 251, 272
RsaNI GTAC 3 cut(s) 163, 250, 271
SaqAI TTAA 2 cut(s) 201, 309
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 3 cut(s) 25, 61, 286
SchI GAGTC 1 cut(s) 184
SduI GDGCHC 3 cut(s) 229, 335, 371
SetI ASST 5 cut(s) 94, 180, 187, 283, 424
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 345
Sfr274I CTCGAG 1 cut(s) 220
SlaI CTCGAG 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 2 cut(s) 259, 324
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 37, 109
TaqI TCGA 3 cut(s) 181, 221, 365
TasI AATT 2 cut(s) 259, 324
TatI WGTACW 2 cut(s) 249, 270
TfiI GAWTC 3 cut(s) 45, 167, 211
Tru1I TTAA 2 cut(s) 201, 309
Tru9I TTAA 2 cut(s) 201, 309
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 153
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 159
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 250
XhoI CTCGAG 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 344
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.