Prupe.5G202900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0018441
Physical Location & Seq
Forward (+)
16313034 .. 16313429
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G202900.1

Sequence Viewer

Length: 396 bp
ATGATCACTGCAACACATGATCGTCCTCCCCACACATTAAGCCCCATATGGAGGCTGAGCCCGAGGCACAACGGTAGCACCTTATATGACTCGTATGAGCTTCGAGCTGTGACTCACCAACTTAACAAAGCCATTCAAGCTTCCAAAGCATCGTCCCCTCATTACAAGTACTGCTTCAATTCACCCTTTTGTACACAAGGCTTGAGTCGCATTTACAAAGAAAGTGTCAAGACACCCAAGAGAATTCTGTGCCAGCAGCAGCTGTCTTGTGCGGCTGCCACCACAGACAAAAAGCCGAGTACAAGGCCTCCTGGGGCAGCTTCGATGGGGTTTGTGACAAGGGCATGGAGGAAAGTGAAGCAAGGATTTCTCAAGAACAAGCCAAGGAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.8

Weight (kDa)

10.27

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14220
prunus_persica Prupe.5G202900_v2.0.a1
rosa_laevigata RLG00000005107
rosa_multiflora Rmu_sc0000014.1_g000039
rosa_roxburghii Rroxscaffold_3G00271050
rosa_rugosa Rorug06G0449500
rosa_samantha Rh7AG053200 Rh7BG052800 Rh7CG054400 Rh7DG052600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 243
AfaI GTAC 3 cut(s) 170, 193, 301
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 2 cut(s) 137, 178
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 5 cut(s) 100, 107, 140, 262, 320
AluI AGCT 5 cut(s) 100, 107, 140, 262, 320
AlwNI CAGNNNCTG 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 61
AoxI GGCC 1 cut(s) 305
ApeKI GCWGC 4 cut(s) 256, 259, 275, 317
ApoI RAATTY 1 cut(s) 243
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AsuHPI GGTGA 2 cut(s) 107, 174
AvaI CYCGRG 1 cut(s) 61
BanII GRGCYC 1 cut(s) 62
BbvI GCAGC 4 cut(s) 262, 268, 271, 329
BccI CCATC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 312
BclI TGATCA 1 cut(s) 3
BisI GCNGC 5 cut(s) 257, 260, 273, 276, 318
BlpI GCTNAGC 1 cut(s) 56
BlsI GCNGC 5 cut(s) 258, 261, 274, 277, 319
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 158
Bpu1102I GCTNAGC 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 223, 356
BsaJI CCNNGG 3 cut(s) 62, 311, 383
BsaXI ACNNNNNCTCC 2 cut(s) 292, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 62, 311, 383
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 47
BseXI GCAGC 4 cut(s) 262, 268, 271, 329
BshFI GGCC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 307
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 62
Bsp1407I TGTACA 1 cut(s) 191
Bsp143I GATC 2 cut(s) 3, 19
Bsp1720I GCTNAGC 1 cut(s) 56
BspACI CCGC 1 cut(s) 272
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 191
BssECI CCNNGG 3 cut(s) 62, 311, 383
BssMI GATC 2 cut(s) 3, 19
BssT1I CCWWGG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 56
BstKTI GATC 2 cut(s) 6, 22
BstMBI GATC 2 cut(s) 3, 19
BstMWI GCNNNNNNNGC 3 cut(s) 137, 146, 207
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstV1I GCAGC 4 cut(s) 262, 268, 271, 329
BsuRI GGCC 1 cut(s) 307
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 254
CaiI CAGNNNCTG 1 cut(s) 262
Csp6I GTAC 3 cut(s) 169, 192, 300
CviAII CATG 2 cut(s) 17, 345
CviQI GTAC 3 cut(s) 169, 192, 300
DdeI CTNAG 1 cut(s) 56
DpnI GATC 2 cut(s) 5, 21
DpnII GATC 2 cut(s) 3, 19
Eco130I CCWWGG 1 cut(s) 383
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 383
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 383
FaeI CATG 2 cut(s) 20, 348
FaiI YATR 7 cut(s) 18, 47, 49, 85, 87, 96, 346
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 16, 344
FauNDI CATATG 1 cut(s) 47
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 5 cut(s) 257, 260, 273, 276, 318
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 5 cut(s) 257, 260, 273, 276, 318
GluI GCNGC 5 cut(s) 257, 260, 273, 276, 318
HaeIII GGCC 1 cut(s) 307
Hin1II CATG 2 cut(s) 20, 348
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 3 cut(s) 89, 112, 205
HphI GGTGA 2 cut(s) 107, 174
Hpy166II GTNNAC 1 cut(s) 194
Hpy188III TCNNGA 2 cut(s) 229, 373
Hpy8I GTNNAC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 146, 207
HpyF3I CTNAG 1 cut(s) 56
Hsp92II CATG 2 cut(s) 20, 348
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 19
LpnPI CCDG 3 cut(s) 266, 297, 324
Lsp1109I GCAGC 4 cut(s) 262, 268, 271, 329
LweI GCATC 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 109, 334
MalI GATC 2 cut(s) 5, 21
MboI GATC 2 cut(s) 3, 19
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 2 cut(s) 178, 243
MlyI GAGTC 3 cut(s) 83, 106, 214
MnlI CCTC 6 cut(s) 36, 45, 57, 168, 318, 342
MseI TTAA 2 cut(s) 38, 123
MspA1I CMGCKG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 3 cut(s) 137, 146, 207
NdeI CATATG 1 cut(s) 47
NdeII GATC 2 cut(s) 3, 19
NlaIII CATG 2 cut(s) 20, 348
NmeAIII GCCGAG 1 cut(s) 321
NmuCI GTSAC 2 cut(s) 109, 334
PceI AGGCCT 1 cut(s) 307
PkrI GCNGC 5 cut(s) 258, 261, 274, 277, 319
PleI GAGTC 3 cut(s) 83, 106, 213
PpsI GAGTC 3 cut(s) 83, 106, 213
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PstNI CAGNNNCTG 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 3 cut(s) 170, 193, 301
RsaNI GTAC 3 cut(s) 169, 192, 300
SaqAI TTAA 2 cut(s) 38, 123
SatI GCNGC 5 cut(s) 257, 260, 273, 276, 318
Sau3AI GATC 2 cut(s) 3, 19
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 3 cut(s) 83, 106, 214
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 62
SetI ASST 6 cut(s) 83, 102, 109, 142, 264, 322
SfaNI GCATC 1 cut(s) 158
SmlI CTYRAG 2 cut(s) 202, 371
SmoI CTYRAG 2 cut(s) 202, 371
Sse9I AATT 2 cut(s) 178, 243
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 1 cut(s) 272
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 383
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 2 cut(s) 103, 323
TasI AATT 2 cut(s) 178, 243
TatI WGTACW 3 cut(s) 168, 191, 299
TauI GCSGC 1 cut(s) 275
Tru1I TTAA 2 cut(s) 38, 123
Tru9I TTAA 2 cut(s) 38, 123
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 2 cut(s) 109, 334
TseI GCWGC 4 cut(s) 256, 259, 275, 317
Tsp45I GTSAC 2 cut(s) 109, 334
TspRI CASTG 1 cut(s) 13
XapI RAATTY 1 cut(s) 243
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.