Rroxscaffold_3G00271050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0018441
Physical Location & Seq
Reverse (-)
63482428 .. 63485081
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271050.1

Sequence Viewer

Length: 462 bp
ATGAGGGTGGTGGCAACAGTGTATACAAAGTGCCAGAATGGTCATAAATGTGAAATCCCAATCGAGGAAGATGGGACACAGAGAAGCCGTACTACAACATTCGCTCGTCAAACCCGTGCGCTTACTATAAGCCCCGTAAGTTCCAGGCACAATGGCAGCACACTATACGACTCGATTGAGCTTCAAGCCGTGACTCAACAACTTAATAGAGCAATTCAAGGTTCGAAAGCATCCACTTCACCTCTCTACATGTACTGCTTCAATTCACCCTTGTACAGAGAAAGTTTAGATCGGATGCGCAGAGAAAGCGTAAAGACGCCAAAGAGAATTTTGTGCTCACAGGTGTCTTGTTCAACAACCTGCGACAGAAAGTCGAGCCCAGAGCCTACAAAGGGGTTTGTATCAAGAGCATGGAACAAAGTGAAGCAAGGTCTTGTGAGGAATAAGCAAAGGAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.39

Weight (kDa)

10.13

Isoelectric Point (pI)

75.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14220
prunus_persica Prupe.5G202900_v2.0.a1
rosa_laevigata RLG00000005107
rosa_multiflora Rmu_sc0000014.1_g000039
rosa_roxburghii Rroxscaffold_3G00271050
rosa_rugosa Rorug06G0449500
rosa_samantha Rh7AG053200 Rh7BG052800 Rh7CG054400 Rh7DG052600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 299
Acc36I ACCTGC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 23
AcsI RAATTY 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 3 cut(s) 91, 254, 275
AfiI CCNNNNNNNGG 2 cut(s) 64, 392
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 4 cut(s) 185, 218, 262, 354
AhdI GACNNNNNGTC 1 cut(s) 370
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 327
AspLEI GCGC 2 cut(s) 121, 300
AsuHPI GGTGA 2 cut(s) 231, 258
AsuII TTCGAA 1 cut(s) 224
BanII GRGCYC 1 cut(s) 380
BarI GAAGNNNNNNTAC 2 cut(s) 76, 108
Bbv12I GWGCWC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 65
BceAI ACGGC 2 cut(s) 72, 173
BciT130I CCWGG 1 cut(s) 145
BfuAI ACCTGC 1 cut(s) 368
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 145
BmeRI GACNNNNNGTC 1 cut(s) 370
BmrFI CCNGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 239, 285
Bpu14I TTCGAA 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 317
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 392
BseBI CCWGG 1 cut(s) 145
BseGI GGATG 2 cut(s) 230, 300
BseLI CCNNNNNNNGG 2 cut(s) 64, 392
BseXI GCAGC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 338
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 64, 392
BsmFI GGGAC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 338, 380
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 368
BspT104I TTCGAA 1 cut(s) 224
BsrGI TGTACA 1 cut(s) 273
BssMI GATC 1 cut(s) 289
BssNAI GTATAC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 317
Bst1107I GTATAC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 273
BstBI TTCGAA 1 cut(s) 224
BstF5I GGATG 2 cut(s) 230, 300
BstHHI GCGC 2 cut(s) 121, 300
BstKTI GATC 1 cut(s) 292
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 168
BstZ17I GTATAC 1 cut(s) 24
BtsCI GGATG 2 cut(s) 230, 300
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 368
CfoI GCGC 2 cut(s) 121, 300
CseI GACGC 1 cut(s) 325
Csp6I GTAC 3 cut(s) 90, 253, 274
CviAII CATG 2 cut(s) 250, 411
CviJI RGCY 6 cut(s) 87, 132, 181, 188, 378, 385
CviKI_1 RGCY 6 cut(s) 87, 132, 181, 188, 378, 385
CviQI GTAC 3 cut(s) 90, 253, 274
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
DriI GACNNNNNGTC 1 cut(s) 370
Eam1105I GACNNNNNGTC 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 380
FaeI CATG 2 cut(s) 253, 414
FaiI YATR 6 cut(s) 24, 45, 128, 166, 251, 412
FaqI GGGAC 1 cut(s) 88
FatI CATG 2 cut(s) 249, 410
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 2 cut(s) 217, 307
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 157
FspI TGCGCA 1 cut(s) 299
GlaI GCGC 2 cut(s) 120, 299
GluI GCNGC 1 cut(s) 157
HgaI GACGC 1 cut(s) 325
HhaI GCGC 2 cut(s) 121, 300
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 2 cut(s) 253, 414
Hin6I GCGC 2 cut(s) 119, 298
HinP1I GCGC 2 cut(s) 119, 298
HinfI GANTC 2 cut(s) 170, 193
HphI GGTGA 2 cut(s) 231, 258
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 405
Hpy8I GTNNAC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 2 cut(s) 253, 414
HspAI GCGC 2 cut(s) 119, 298
Kzo9I GATC 1 cut(s) 289
LpnPI CCDG 6 cut(s) 47, 130, 157, 326, 373, 393
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 2 cut(s) 239, 285
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 338, 380
MluCI AATT 3 cut(s) 213, 262, 327
MlyI GAGTC 2 cut(s) 164, 187
MnlI CCTC 3 cut(s) 58, 252, 432
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 48
MspR9I CCNGG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 306
NdeII GATC 1 cut(s) 289
NlaIII CATG 2 cut(s) 253, 414
NmuCI GTSAC 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 299
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 1 cut(s) 224
PciI ACATGT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PkrI GCNGC 1 cut(s) 158
PleI GAGTC 2 cut(s) 164, 187
PpsI GAGTC 2 cut(s) 164, 187
PscI ACATGT 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
RsaI GTAC 3 cut(s) 91, 254, 275
RsaNI GTAC 3 cut(s) 90, 253, 274
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 1 cut(s) 289
SchI GAGTC 2 cut(s) 164, 187
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 2 cut(s) 338, 380
SetI ASST 6 cut(s) 183, 223, 244, 345, 362, 433
SfaNI GCATC 2 cut(s) 239, 285
SfuI TTCGAA 1 cut(s) 224
SmiMI CAYNNNNRTG 1 cut(s) 48
Sse9I AATT 3 cut(s) 213, 262, 327
StyD4I CCNGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 19
TaqI TCGA 4 cut(s) 63, 173, 224, 374
TasI AATT 3 cut(s) 213, 262, 327
TatI WGTACW 2 cut(s) 252, 273
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 190
TspRI CASTG 1 cut(s) 24
XapI RAATTY 1 cut(s) 327
XceI RCATGY 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.