Rmu_sc0000014.1_g000039

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000014.1
OG0018441
Physical Location & Seq
Reverse (-)
200518 .. 200964
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000014.1_g000039.1.cds

Sequence Viewer

Length: 447 bp
atggcttcaaaacaaataaagcttgctacttttctagaaatcccaatcgaggaagatgggacacagagaagccgtaccacaacattcgctcatcaaacccgtgcgcttactataagccccgtaagttccaggcacaatggcagcacactatacgactcgtttgagcttcgagccgtgactcaacaacttaatagagcaattcaaggttcgaaagcatccacttcacctctctacatgtactgcttcaattcacccttgtacagagaaagtttagatcggatgcgcaaagaaagcgtcaagacgccaaagagaattttgtgctcacaggtgtcttgttcaacaacctgcgacagaaagtcgagcccagagcctacaaaggggtttgtatcaagagcatggaacaaagtgaagcaaggtcttgtgaggaataagcagaggaacaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.82

Weight (kDa)

10.22

Isoelectric Point (pI)

71.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14220
prunus_persica Prupe.5G202900_v2.0.a1
rosa_laevigata RLG00000005107
rosa_multiflora Rmu_sc0000014.1_g000039
rosa_roxburghii Rroxscaffold_3G00271050
rosa_rugosa Rorug06G0449500
rosa_samantha Rh7AG053200 Rh7BG052800 Rh7CG054400 Rh7DG052600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 284
Acc36I ACCTGC 1 cut(s) 353
AcsI RAATTY 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 302
AfaI GTAC 3 cut(s) 76, 239, 260
AfiI CCNNNNNNNGG 2 cut(s) 49, 377
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 4 cut(s) 9, 203, 247, 339
AhdI GACNNNNNGTC 1 cut(s) 355
AjnI CCWGG 1 cut(s) 128
AluBI AGCT 2 cut(s) 22, 166
AluI AGCT 2 cut(s) 22, 166
Alw21I GWGCWC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 312
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AspLEI GCGC 2 cut(s) 106, 285
AsuHPI GGTGA 2 cut(s) 216, 243
AsuII TTCGAA 1 cut(s) 209
BanII GRGCYC 1 cut(s) 365
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 153
BccI CCATC 1 cut(s) 50
BceAI ACGGC 2 cut(s) 57, 158
BciT130I CCWGG 1 cut(s) 130
BfaI CTAG 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 353
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 130
BmeRI GACNNNNNGTC 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 224, 270
Bpu14I TTCGAA 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 302
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 377
BseBI CCWGG 1 cut(s) 130
BseGI GGATG 2 cut(s) 215, 285
BseLI CCNNNNNNNGG 2 cut(s) 49, 377
BseXI GCAGC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 323
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 49, 377
BsmFI GGGAC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 323, 365
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 353
BspT104I TTCGAA 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 258
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 130
BstACI GRCGYC 1 cut(s) 302
BstAUI TGTACA 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 24
BstF5I GGATG 2 cut(s) 215, 285
BstHHI GCGC 2 cut(s) 106, 285
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 130
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 215, 285
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 2 cut(s) 106, 285
CseI GACGC 2 cut(s) 283, 310
Csp6I GTAC 3 cut(s) 75, 238, 259
CviAII CATG 2 cut(s) 235, 396
CviJI RGCY 8 cut(s) 5, 22, 72, 117, 166, 173, 363, 370
CviKI_1 RGCY 8 cut(s) 5, 22, 72, 117, 166, 173, 363, 370
CviQI GTAC 3 cut(s) 75, 238, 259
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
DriI GACNNNNNGTC 1 cut(s) 355
Eam1105I GACNNNNNGTC 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 365
FaeI CATG 2 cut(s) 238, 399
FaiI YATR 4 cut(s) 113, 151, 236, 397
FaqI GGGAC 1 cut(s) 73
FatI CATG 2 cut(s) 234, 395
Fnu4HI GCNGC 1 cut(s) 142
FokI GGATG 2 cut(s) 202, 292
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 35
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 2 cut(s) 105, 284
GluI GCNGC 1 cut(s) 142
HgaI GACGC 2 cut(s) 283, 310
HhaI GCGC 2 cut(s) 106, 285
Hin1I GRCGYC 1 cut(s) 302
Hin1II CATG 2 cut(s) 238, 399
Hin6I GCGC 2 cut(s) 104, 283
HinP1I GCGC 2 cut(s) 104, 283
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 2 cut(s) 155, 178
HphI GGTGA 2 cut(s) 216, 243
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 3 cut(s) 35, 298, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 302
Hsp92II CATG 2 cut(s) 238, 399
HspAI GCGC 2 cut(s) 104, 283
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 5 cut(s) 115, 142, 311, 358, 378
Lsp1109I GCAGC 1 cut(s) 153
LweI GCATC 2 cut(s) 224, 270
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 323, 365
MluCI AATT 3 cut(s) 198, 247, 312
MlyI GAGTC 2 cut(s) 149, 172
MnlI CCTC 4 cut(s) 43, 237, 417, 429
MseI TTAA 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 291
NdeII GATC 1 cut(s) 274
NlaIII CATG 2 cut(s) 238, 399
NmuCI GTSAC 1 cut(s) 175
NsbI TGCGCA 1 cut(s) 284
NspI RCATGY 1 cut(s) 238
NspV TTCGAA 1 cut(s) 209
PciI ACATGT 1 cut(s) 234
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 2 cut(s) 149, 172
PpsI GAGTC 2 cut(s) 149, 172
PscI ACATGT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
RsaI GTAC 3 cut(s) 76, 239, 260
RsaNI GTAC 3 cut(s) 75, 238, 259
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 2 cut(s) 149, 172
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 2 cut(s) 323, 365
SetI ASST 7 cut(s) 24, 168, 208, 229, 330, 347, 418
SfaNI GCATC 2 cut(s) 224, 270
SfuI TTCGAA 1 cut(s) 209
Sse9I AATT 3 cut(s) 198, 247, 312
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 128
TaqI TCGA 4 cut(s) 48, 169, 209, 359
TasI AATT 3 cut(s) 198, 247, 312
TatI WGTACW 2 cut(s) 237, 258
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 1 cut(s) 141
Tsp45I GTSAC 1 cut(s) 175
XapI RAATTY 1 cut(s) 312
XbaI TCTAGA 1 cut(s) 34
XceI RCATGY 1 cut(s) 238
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.