FvH4_5g15220

Transcription factor PRE6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015630
Physical Location & Seq
Reverse (-)
8590799 .. 8592206
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15220.t1

Sequence Viewer

Length: 276 bp
ATGTCAAGCCGAAGAACAAGAGCTTCTCAACCCACAGAGGACGAGATTAAGGAGCTCGTCTTAAACCTACAAGCGCTGCTACCACAGCTTAATCATAGGCGAAATGCAACGGCATCAGCCTCCACTATTTTGGAAGAAACTTGTTCTTACATCAAGAGGCTACATAAAGAGGTAGGCGACCTGAGCCAAAGACTATCTCAACTACTGCATGATTCTGCAGAAATTGCAGACGTTGATGAAGAGCTTATTACTCGACTCCTCTCCACCATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

92

Amino Acids

10.3

Weight (kDa)

5.54

Isoelectric Point (pI)

69.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_ILI PF23174 12 - 75 5.3e-19 ILI bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g15220
malus_domestica MD00G1186500.v1.1 MD06G1190900.v1.1 MD14G1197600.v1.1
prunus_persica Prupe.5G189600_v2.0.a1
pyrus_communis pycom06g16920
rosa_chinensis RchiOBHm_Chr7g0180941
rosa_multiflora Rmu_sc0004056.1_g000007 Rmu_sc0028417.1_g000007
rosa_roxburghii Rroxscaffold_3G00272400
rosa_rugosa Rorug06G0437800.1
rosa_samantha Rh7AG039200 Rh7BG038500 Rh7CG040200 Rh7DG038600
rosa_wichuraiana Rw7G003210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfeI AGCGCT 1 cut(s) 75
AluBI AGCT 4 cut(s) 23, 55, 88, 244
AluI AGCT 4 cut(s) 23, 55, 88, 244
Alw21I GWGCWC 1 cut(s) 57
Aor51HI AGCGCT 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 76
AseI ATTAAT 1 cut(s) 270
AspLEI GCGC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmsI GCATC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 182
BseMII CTCAG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 220
BspQI GCTCTTC 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 85, 183, 224
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 130
CfoI GCGC 1 cut(s) 76
CviAII CATG 1 cut(s) 209
CviJI RGCY 8 cut(s) 9, 23, 55, 88, 119, 160, 186, 244
CviKI_1 RGCY 8 cut(s) 9, 23, 55, 88, 119, 160, 186, 244
DdeI CTNAG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco47III AGCGCT 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 1 cut(s) 212
FaiI YATR 3 cut(s) 96, 165, 210
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 77
GlaI GCGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 77
HhaI GCGC 1 cut(s) 76
Hin1II CATG 1 cut(s) 212
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 2 cut(s) 212, 255
Hpy188III TCNNGA 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 107, 208, 218, 227
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 183, 224
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 1 cut(s) 212
HspAI GCGC 1 cut(s) 74
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 1 cut(s) 194
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 122
MaeII ACGT 1 cut(s) 231
MboII GAAGA 3 cut(s) 24, 146, 251
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 222, 271
MlyI GAGTC 1 cut(s) 249
MnlI CCTC 5 cut(s) 31, 130, 150, 163, 269
MseI TTAA 5 cut(s) 48, 62, 90, 270, 274
MwoI GCNNNNNNNGC 3 cut(s) 85, 183, 224
NlaIII CATG 1 cut(s) 212
PacI TTAATTAA 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 220
SacI GAGCTC 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 5 cut(s) 48, 62, 90, 270, 274
SatI GCNGC 1 cut(s) 77
SchI GAGTC 1 cut(s) 249
SduI GDGCHC 1 cut(s) 57
SetI ASST 8 cut(s) 25, 57, 69, 90, 174, 183, 234, 246
SfaNI GCATC 1 cut(s) 122
SfcI CTRYAG 1 cut(s) 216
Sse9I AATT 2 cut(s) 222, 271
SstI GAGCTC 1 cut(s) 57
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 253
TasI AATT 2 cut(s) 222, 271
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 5 cut(s) 48, 62, 90, 270, 274
Tru9I TTAA 5 cut(s) 48, 62, 90, 270, 274
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 252
VspI ATTAAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.