MD00G1186500.v1.1

Transcription factor PRE6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0015630
Physical Location & Seq
Reverse (-)
44302692 .. 44303097
406 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1186500.v1.1.491

Sequence Viewer

Length: 288 bp
ATGTCAAGTAGAAGACCATCATCATCATCATCATCATCAAGAATGTCTAAACCCTCAGATGATGAGATTAAGGAGCTCATCTCAAAATTACAACCTCTTCTTCCTCAGCTTCATCATACGCGTAATGCTCCGGTATCGGCATCGAGCATTTTGGAAGAAACTTGCAGTTACATAAGGAGGCTGCATAGGGAGGTGGAAGATCTGAGCCAAAGAATATCTCGACTCCTGGATTCTGCAGACATCTCTGATGTTGATGAAGAGCTTATTAGAAGACTTTTGCAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

96

Amino Acids

10.87

Weight (kDa)

6.41

Isoelectric Point (pI)

95.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_ILI PF23174 19 - 93 1.1e-22 ILI bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g15220
malus_domestica MD00G1186500.v1.1 MD06G1190900.v1.1 MD14G1197600.v1.1
prunus_persica Prupe.5G189600_v2.0.a1
pyrus_communis pycom06g16920
rosa_chinensis RchiOBHm_Chr7g0180941
rosa_multiflora Rmu_sc0004056.1_g000007 Rmu_sc0028417.1_g000007
rosa_roxburghii Rroxscaffold_3G00272400
rosa_rugosa Rorug06G0437800.1
rosa_samantha Rh7AG039200 Rh7BG038500 Rh7CG040200 Rh7DG038600
rosa_wichuraiana Rw7G003210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 121
AflIII ACRYGT 1 cut(s) 119
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 3 cut(s) 76, 109, 262
AluI AGCT 3 cut(s) 76, 109, 262
Alw21I GWGCWC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 181, 280
BanII GRGCYC 1 cut(s) 78
BbsI GAAGAC 2 cut(s) 19, 277
Bbv12I GWGCWC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 227
BfmI CTRYAG 1 cut(s) 234
BglII AGATCT 1 cut(s) 199
BisI GCNGC 2 cut(s) 182, 281
BlsI GCNGC 2 cut(s) 183, 282
Bme1390I CCNGG 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 149
BpiI GAAGAC 2 cut(s) 19, 277
BplI GAGNNNNNCTC 2 cut(s) 65, 97
Bpu10I CCTNAGC 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 130
BseBI CCWGG 1 cut(s) 227
BseMII CTCAG 3 cut(s) 69, 119, 194
BseXI GCAGC 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 199
BspCNI CTCAG 3 cut(s) 68, 118, 195
BspFNI CGCG 1 cut(s) 121
BspMAI CTGCAG 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 252
BssMI GATC 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 227
Bst6I CTCTTC 2 cut(s) 102, 252
BstDEI CTNAG 3 cut(s) 55, 105, 203
BstFNI CGCG 1 cut(s) 121
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 234
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 2 cut(s) 19, 277
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
CviJI RGCY 5 cut(s) 76, 109, 181, 207, 262
CviKI_1 RGCY 5 cut(s) 76, 109, 181, 207, 262
DdeI CTNAG 3 cut(s) 55, 105, 203
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 102, 252
EarI CTCTTC 2 cut(s) 102, 252
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 78
FaiI YATR 3 cut(s) 117, 173, 186
Fnu4HI GCNGC 2 cut(s) 182, 281
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 2 cut(s) 182, 281
GluI GCNGC 2 cut(s) 182, 281
HapII CCGG 1 cut(s) 131
HinfI GANTC 2 cut(s) 222, 230
HpaII CCGG 1 cut(s) 131
Hpy188I TCNGA 3 cut(s) 58, 204, 247
Hpy188III TCNNGA 2 cut(s) 39, 219
HpyCH4V TGCA 4 cut(s) 165, 184, 236, 280
HpyF3I CTNAG 3 cut(s) 55, 105, 203
Kzo9I GATC 1 cut(s) 199
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 2 cut(s) 73, 133
LpnPI CCDG 3 cut(s) 144, 212, 239
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 167
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 7 cut(s) 24, 89, 92, 167, 209, 269, 282
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 1 cut(s) 86
MluI ACGCGT 1 cut(s) 119
MlyI GAGTC 1 cut(s) 216
MnlI CCTC 5 cut(s) 64, 105, 114, 171, 184
MseI TTAA 2 cut(s) 69, 286
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 121
NdeII GATC 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 225
PkrI GCNGC 2 cut(s) 183, 282
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PstI CTGCAG 1 cut(s) 238
PsuI RGATCY 1 cut(s) 199
SacI GAGCTC 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 69, 286
SatI GCNGC 2 cut(s) 182, 281
Sau3AI GATC 1 cut(s) 199
SchI GAGTC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 1 cut(s) 78
SetI ASST 5 cut(s) 78, 97, 111, 195, 264
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 234
SgeI CNNG 9 cut(s) 18, 51, 132, 143, 156, 174, 231, 238, 239
Sse9I AATT 1 cut(s) 86
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 225
TaqI TCGA 2 cut(s) 143, 220
TasI AATT 1 cut(s) 86
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 69, 286
Tru9I TTAA 2 cut(s) 69, 286
TseI GCWGC 2 cut(s) 181, 280
TspDTI ATGAA 2 cut(s) 101, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.