MD06G1190900.v1.1

Transcription factor PRE6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015630
Physical Location & Seq
Forward (+)
32722126 .. 32722775
650 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1190900.v1.1.491

Sequence Viewer

Length: 279 bp
ATGTCAAGCAGATCATCATCATCATCATCAAGAGCTTCTAAATCCTCAGATGATGAGATTAAGGAGCTCGTCTTAAAGCTACAACCGCTCCTTCCTCAGCTTCATCATTTGCGCAACGCACCGGTATCAGCATCGAGCATTTTGGAAGAAACTTGCAGTTACATAAAGAGGCTGCATAGGGAGGTGGAAGATCTGAGCAAAAGACTATCTGAACTCCTGGATTCAGCAGGCATCACTGATGTTGATGAAGAACTTATTAGAACGCTTTTACGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

93

Amino Acids

10.35

Weight (kDa)

6.06

Isoelectric Point (pI)

80.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_ILI PF23174 16 - 90 3.2e-21 ILI bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g15220
malus_domestica MD00G1186500.v1.1 MD06G1190900.v1.1 MD14G1197600.v1.1
prunus_persica Prupe.5G189600_v2.0.a1
pyrus_communis pycom06g16920
rosa_chinensis RchiOBHm_Chr7g0180941
rosa_multiflora Rmu_sc0004056.1_g000007 Rmu_sc0028417.1_g000007
rosa_roxburghii Rroxscaffold_3G00272400
rosa_rugosa Rorug06G0437800.1
rosa_samantha Rh7AG039200 Rh7BG038500 Rh7CG040200 Rh7DG038600
rosa_wichuraiana Rw7G003210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 88
AciI CCGC 1 cut(s) 86
AgeI ACCGGT 1 cut(s) 121
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 4 cut(s) 35, 67, 79, 100
AluI AGCT 4 cut(s) 35, 67, 79, 100
Alw21I GWGCWC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 172
AsiGI ACCGGT 1 cut(s) 121
AspLEI GCGC 1 cut(s) 114
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 218
BglII AGATCT 1 cut(s) 190
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 140, 240
Bpu10I CCTNAGC 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 16
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bse118I RCCGGY 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 16
BseBI CCWGG 1 cut(s) 218
BseJI GATNNNNATC 1 cut(s) 16
BseMII CTCAG 3 cut(s) 60, 110, 185
BseXI GCAGC 1 cut(s) 159
BshTI ACCGGT 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 11, 190
BspACI CCGC 1 cut(s) 86
BspCNI CTCAG 3 cut(s) 59, 109, 186
BsrBI CCGCTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 121
BssMI GATC 2 cut(s) 11, 190
Bst2UI CCWGG 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 3 cut(s) 46, 96, 194
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 14, 193
BstMBI GATC 2 cut(s) 11, 190
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 1 cut(s) 114
Cfr10I RCCGGY 1 cut(s) 121
CspAI ACCGGT 1 cut(s) 121
CviJI RGCY 5 cut(s) 35, 67, 79, 100, 172
CviKI_1 RGCY 5 cut(s) 35, 67, 79, 100, 172
DdeI CTNAG 3 cut(s) 46, 96, 194
DpnI GATC 2 cut(s) 13, 192
DpnII GATC 2 cut(s) 11, 190
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 69
FaiI YATR 2 cut(s) 164, 177
Fnu4HI GCNGC 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 173
FspI TGCGCA 1 cut(s) 113
GlaI GCGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 173
HapII CCGG 1 cut(s) 122
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 122
Hpy188I TCNGA 3 cut(s) 49, 195, 211
Hpy188III TCNNGA 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 101
HpyCH4V TGCA 2 cut(s) 156, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 3 cut(s) 46, 96, 194
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 11, 190
LmnI GCTCC 2 cut(s) 64, 93
LpnPI CCDG 4 cut(s) 135, 203, 213, 230
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 2 cut(s) 140, 240
MaeIII GTNAC 1 cut(s) 158
MalI GATC 2 cut(s) 13, 192
MbiI CCGCTC 1 cut(s) 88
MboI GATC 2 cut(s) 11, 190
MboII GAAGA 3 cut(s) 158, 200, 260
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 69
MnlI CCTC 4 cut(s) 55, 105, 162, 175
MseI TTAA 3 cut(s) 60, 74, 277
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 2 cut(s) 11, 190
NsbI TGCGCA 1 cut(s) 113
PfeI GAWTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 216
PinAI ACCGGT 1 cut(s) 121
PkrI GCNGC 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PsuI RGATCY 1 cut(s) 190
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 60, 74, 277
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 2 cut(s) 11, 190
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 69
SetI ASST 5 cut(s) 37, 69, 81, 102, 186
SfaNI GCATC 2 cut(s) 140, 240
SgeI CNNG 9 cut(s) 18, 42, 80, 134, 147, 165, 229, 230, 240
SsiI CCGC 1 cut(s) 86
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 216
TaqI TCGA 1 cut(s) 134
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 3 cut(s) 60, 74, 277
Tru9I TTAA 3 cut(s) 60, 74, 277
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 92, 261
TspRI CASTG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.