MD14G1197600.v1.1

Transcription factor PRE6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0015630
Physical Location & Seq
Forward (+)
28776620 .. 28777342
723 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1197600.v1.1.491

Sequence Viewer

Length: 279 bp
ATGTCAAGCAGAAGATCATCATCATCATCAAGAACTTCTAAACCCTCAGATGATGAGATTAAGGAGCTCATCTCAAAATTACAACCTCTTCTTCCTCAGCTTCATCATACGCGTAATGCTCCGGTATCGGCGTCGAGCATTTTGGAAGAAACTTGCAGTTACATAAAGAGGCTGCATAGGGAGGTGGAAGATCTGAGCCAAAGAATATCTCAACTCCTGGATTCTGCAGGCATCTCTGATGTTGATGAAGAGCTTATTAGAAGACTTTTGCAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

93

Amino Acids

10.45

Weight (kDa)

6.41

Isoelectric Point (pI)

85.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_ILI PF23174 16 - 90 1.4e-21 ILI bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015630)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g15220
malus_domestica MD00G1186500.v1.1 MD06G1190900.v1.1 MD14G1197600.v1.1
prunus_persica Prupe.5G189600_v2.0.a1
pyrus_communis pycom06g16920
rosa_chinensis RchiOBHm_Chr7g0180941
rosa_multiflora Rmu_sc0004056.1_g000007 Rmu_sc0028417.1_g000007
rosa_roxburghii Rroxscaffold_3G00272400
rosa_rugosa Rorug06G0437800.1
rosa_samantha Rh7AG039200 Rh7BG038500 Rh7CG040200 Rh7DG038600
rosa_wichuraiana Rw7G003210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AcyI GRCGYC 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 110
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 3 cut(s) 67, 100, 253
AluI AGCT 3 cut(s) 67, 100, 253
Alw21I GWGCWC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 172, 271
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 225
BglII AGATCT 1 cut(s) 190
BisI GCNGC 2 cut(s) 173, 272
BlsI GCNGC 2 cut(s) 174, 273
Bme1390I CCNGG 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 268
BplI GAGNNNNNCTC 2 cut(s) 56, 88
Bpu10I CCTNAGC 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 19
BseBI CCWGG 1 cut(s) 218
BseJI GATNNNNATC 1 cut(s) 19
BseMII CTCAG 3 cut(s) 60, 110, 185
BseXI GCAGC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 2 cut(s) 14, 190
BspCNI CTCAG 3 cut(s) 59, 109, 186
BspFNI CGCG 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 229
BspQI GCTCTTC 1 cut(s) 243
BssMI GATC 2 cut(s) 14, 190
BssNI GRCGYC 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 218
Bst6I CTCTTC 2 cut(s) 93, 243
BstACI GRCGYC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 3 cut(s) 46, 96, 194
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 2 cut(s) 17, 193
BstMBI GATC 2 cut(s) 14, 190
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 225
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 229
CseI GACGC 1 cut(s) 120
CviJI RGCY 5 cut(s) 67, 100, 172, 198, 253
CviKI_1 RGCY 5 cut(s) 67, 100, 172, 198, 253
DdeI CTNAG 3 cut(s) 46, 96, 194
DpnI GATC 2 cut(s) 16, 192
DpnII GATC 2 cut(s) 14, 190
Eam1104I CTCTTC 2 cut(s) 93, 243
EarI CTCTTC 2 cut(s) 93, 243
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 69
FaiI YATR 3 cut(s) 108, 164, 177
Fnu4HI GCNGC 2 cut(s) 173, 272
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 173, 272
GluI GCNGC 2 cut(s) 173, 272
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 120
Hin1I GRCGYC 1 cut(s) 131
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 122
Hpy188I TCNGA 3 cut(s) 49, 195, 238
Hpy188III TCNNGA 1 cut(s) 30
Hpy99I CGWCG 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 156, 175, 227, 271
HpyF3I CTNAG 3 cut(s) 46, 96, 194
Hsp92I GRCGYC 1 cut(s) 131
Kzo9I GATC 2 cut(s) 14, 190
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 2 cut(s) 64, 124
LpnPI CCDG 4 cut(s) 135, 203, 213, 230
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 158
MalI GATC 2 cut(s) 16, 192
MboI GATC 2 cut(s) 14, 190
MboII GAAGA 7 cut(s) 24, 80, 83, 158, 200, 260, 273
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 1 cut(s) 77
MluI ACGCGT 1 cut(s) 110
MnlI CCTC 5 cut(s) 55, 96, 105, 162, 175
MseI TTAA 2 cut(s) 60, 277
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 112
NdeII GATC 2 cut(s) 14, 190
PciSI GCTCTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 216
PkrI GCNGC 2 cut(s) 174, 273
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PstI CTGCAG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 190
SacI GAGCTC 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 60, 277
SatI GCNGC 2 cut(s) 173, 272
Sau3AI GATC 2 cut(s) 14, 190
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 69
SetI ASST 5 cut(s) 69, 88, 102, 186, 255
SfaNI GCATC 1 cut(s) 240
SfcI CTRYAG 1 cut(s) 225
SgeI CNNG 9 cut(s) 18, 42, 123, 134, 147, 165, 229, 230, 240
Sse9I AATT 1 cut(s) 77
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 216
TaqI TCGA 1 cut(s) 134
TasI AATT 1 cut(s) 77
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 60, 277
Tru9I TTAA 2 cut(s) 60, 277
TseI GCWGC 2 cut(s) 172, 271
TspDTI ATGAA 2 cut(s) 92, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.