Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012621

Physical Location & Seq

Genomic Coordinates Reverse (-)

8984711 .. 8988605

Gene Structure 3895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15880.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTCGGACACCTTCTGCCAACTGTGCAAGTGTTTCACGGAGGTTGTCTCCGACCACGCCACCGGCGACACCTCCTGCTCCGAATGTGGGACTCTTGTCGTCGAAGAAACCTCCGAGTGGGTCCCTGACCCGACCCGGGAGCCCGTTAGCCCGGTTCGACTCGAGAGTGGGGTTTCCGGGTCCAATGGAGCCACCGAGGAGGAGGAGGAGGAGGCCTTGCCGGCGCCGCGGCGGAAGCGGCGGGGGAGGCCAAAACGTCCGCCTTATGAGTCTATTGCTGAAGTGGCTAACAGGTTGGGACTTGGTGCAACTATAAAGGATCGAGCCAGTGACATATATAAGAAGGTGATTGATCAGAAACCTCTCAAATACAAAACTCCAGCTGCAGTTGTGGCTGCTTGCGTCTACGTTGCCTGTAGACAAGAAAGTAATCCCCGTACTGTGAAAGAAATGTGCTCAGCAAATGGAGCTAAAACGAAAGAAGTTGTTAGGGTAAAAGACTTCATCATGAAATACTTAGTGACTGAGGGTCAGGAAATAGTAATTGTTCATGCTGCAGATTTTCTGACACATTTTTGTTCTGTTCTTGGAATGTCAAATATAGAAGTCATGGCTGCCCAAGAAACAGTCAGAAATTCTGAAGAACTTGCAATAAGGTTTGATACTGAGGAGCCCAATATCGTTGGCAGCTGTTGTTATTTACATCATAGCTCAACTATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIB TF_Zn_Ribbon

Protein Analysis

242

Amino Acids

26.58

Weight (kDa)

5.53

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIB	PF00382	88 - 161	4.5e-16	Transcription factor TFIIB repeat
TFIIB	PF00382	183 - 266	5.4e-11	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012621)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880
rosa_chinensis	RchiOBHm_Chr7g0180171
rosa_laevigata	RLG00000005285
rosa_multiflora	Rmu_ssc0000119.1_g000040
rosa_roxburghii	Rroxscaffold_3G00273060
rosa_rugosa	Rorug06G0431200 Rorug06G0431300 Rorug06G0431400 Rorug06G0431500
rosa_samantha	Rh7AG031700 Rh7BG031700 Rh7CG033500 Rh7DG032100
rosa_wichuraiana	Rw7G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AccI	GTMKAC	2 cut(s)	405, 418
AccII	CGCG	1 cut(s)	229
AciI	CCGC	6 cut(s)	227, 229, 232, 238, 241, 260
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	2 cut(s)	300, 660
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	3 cut(s)	87, 117, 136
AhdI	GACNNNNNGTC	1 cut(s)	528
AluBI	AGCT	4 cut(s)	383, 470, 690, 711
AluI	AGCT	4 cut(s)	383, 470, 690, 711
Alw21I	GWGCWC	1 cut(s)	458
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	2 cut(s)	135, 161
AoxI	GGCC	2 cut(s)	213, 248
ApeKI	GCWGC	5 cut(s)	383, 395, 554, 614, 687
ApoI	RAATTY	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	121, 180
AsuC2I	CCSGG	4 cut(s)	136, 137, 152, 178
AsuHPI	GGTGA	1 cut(s)	358
AvaI	CYCGRG	2 cut(s)	135, 161
AvaII	GGWCC	2 cut(s)	121, 180
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	2 cut(s)	144, 675
Bbv12I	GWGCWC	1 cut(s)	458
BbvI	GCAGC	5 cut(s)	370, 382, 541, 601, 699
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	4 cut(s)	136, 137, 152, 178
BcoDI	GTCTC	1 cut(s)	52
BfmI	CTRYAG	3 cut(s)	384, 415, 555
BfoI	RGCGCY	1 cut(s)	227
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	8 cut(s)	227, 230, 239, 384, 396, 555, 615, 688
BlpI	GCTNAGC	1 cut(s)	457
BlsI	GCNGC	8 cut(s)	228, 231, 240, 385, 397, 556, 616, 689
Bme1390I	CCNGG	4 cut(s)	136, 137, 152, 178
Bme18I	GGWCC	2 cut(s)	121, 180
BmeRI	GACNNNNNGTC	1 cut(s)	528
BmeT110I	CYCGRG	2 cut(s)	135, 161
BmgT120I	GGNCC	2 cut(s)	121, 180
BmiI	GGNNCC	7 cut(s)	122, 123, 141, 181, 190, 225, 672
BmrFI	CCNGG	4 cut(s)	136, 137, 152, 178
BoxI	GACNNNNGTC	1 cut(s)	95
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
BpmI	CTGGAG	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	457
BpuMI	CCSGG	4 cut(s)	136, 137, 152, 178
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	3 cut(s)	135, 195, 227
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 117, 136
Bse118I	RCCGGY	2 cut(s)	62, 220
Bse1I	ACTGG	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	135, 195, 227
BseLI	CCNNNNNNNGG	3 cut(s)	87, 117, 136
BseMII	CTCAG	3 cut(s)	471, 516, 657
BseNI	ACTGG	1 cut(s)	327
BseRI	GAGGAG	6 cut(s)	212, 215, 218, 221, 224, 683
BseXI	GCAGC	5 cut(s)	370, 382, 541, 601, 699
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	2 cut(s)	215, 250
BshNI	GGYRCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	458
BsiHKCI	CYCGRG	2 cut(s)	135, 161
BsiSI	CCGG	5 cut(s)	63, 136, 152, 177, 221
BslFI	GGGAC	3 cut(s)	103, 107, 312
BslI	CCNNNNNNNGG	3 cut(s)	87, 117, 136
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	3 cut(s)	103, 107, 312
BsnI	GGCC	2 cut(s)	215, 250
BsoBI	CYCGRG	2 cut(s)	135, 161
Bsp1286I	GDGCHC	3 cut(s)	144, 458, 675
Bsp143I	GATC	2 cut(s)	319, 352
Bsp1720I	GCTNAGC	1 cut(s)	457
BspACI	CCGC	6 cut(s)	227, 229, 232, 238, 241, 260
BspANI	GGCC	2 cut(s)	215, 250
BspCNI	CTCAG	3 cut(s)	470, 517, 658
BspFNI	CGCG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	7 cut(s)	122, 123, 141, 181, 190, 225, 672
BspMAI	CTGCAG	2 cut(s)	388, 559
BspPI	GGATC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	223
BsrFI	RCCGGY	2 cut(s)	62, 220
BsrI	ACTGG	1 cut(s)	327
BssAI	RCCGGY	2 cut(s)	62, 220
BssECI	CCNNGG	3 cut(s)	135, 195, 227
BssMI	GATC	2 cut(s)	319, 352
BssNI	GRCGYC	1 cut(s)	224
Bst4CI	ACNGT	3 cut(s)	24, 442, 628
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	222, 400
BstDEI	CTNAG	4 cut(s)	457, 517, 525, 666
BstDSI	CCRYGG	1 cut(s)	227
BstFNI	CGCG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	2 cut(s)	322, 355
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	319, 352
BstMWI	GCNNNNNNNGC	9 cut(s)	24, 221, 226, 235, 238, 247, 284, 392, 467
BstPAI	GACNNNNGTC	1 cut(s)	95
BstSCI	CCNGG	4 cut(s)	134, 135, 150, 176
BstSFI	CTRYAG	3 cut(s)	384, 415, 555
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	5 cut(s)	370, 382, 541, 601, 699
BsuRI	GGCC	2 cut(s)	215, 250
BtgI	CCRYGG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	222, 400
CciI	TCATGA	1 cut(s)	507
CfoI	GCGC	1 cut(s)	226
Cfr10I	RCCGGY	2 cut(s)	62, 220
Cfr13I	GGNCC	2 cut(s)	121, 180
Cfr42I	CCGCGG	1 cut(s)	230
Cfr9I	CCCGGG	1 cut(s)	135
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	3 cut(s)	508, 551, 610
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	4 cut(s)	457, 517, 525, 666
DinI	GGCGCC	1 cut(s)	225
DpnI	GATC	2 cut(s)	321, 354
DpnII	GATC	2 cut(s)	319, 352
DriI	GACNNNNNGTC	1 cut(s)	528
Eam1105I	GACNNNNNGTC	1 cut(s)	528
EciI	GGCGGA	2 cut(s)	247, 249
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	2 cut(s)	144, 675
Eco47I	GGWCC	2 cut(s)	121, 180
Eco57I	CTGAAG	2 cut(s)	300, 660
Eco88I	CYCGRG	2 cut(s)	135, 161
EcoO109I	RGGNCCY	1 cut(s)	121
EcoT38I	GRGCYC	2 cut(s)	144, 675
EgeI	GGCGCC	1 cut(s)	225
EheI	GGCGCC	1 cut(s)	225
FaeI	CATG	3 cut(s)	511, 554, 613
FaqI	GGGAC	3 cut(s)	103, 107, 312
FatI	CATG	3 cut(s)	507, 550, 609
FauI	CCCGC	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	2 cut(s)	405, 418
Fnu4HI	GCNGC	8 cut(s)	227, 230, 239, 384, 396, 555, 615, 688
FriOI	GRGCYC	2 cut(s)	144, 675
Fsp4HI	GCNGC	8 cut(s)	227, 230, 239, 384, 396, 555, 615, 688
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	8 cut(s)	227, 230, 239, 384, 396, 555, 615, 688
GsuI	CTGGAG	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	215, 250
HapII	CCGG	5 cut(s)	63, 136, 152, 177, 221
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	511, 554, 613
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	3 cut(s)	91, 159, 269
HpaII	CCGG	5 cut(s)	63, 136, 152, 177, 221
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	2 cut(s)	406, 419
Hpy188I	TCNGA	8 cut(s)	7, 52, 82, 115, 357, 567, 632, 640
Hpy188III	TCNNGA	3 cut(s)	163, 508, 533
Hpy8I	GTNNAC	2 cut(s)	406, 419
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	22, 337
HpyCH4III	ACNGT	3 cut(s)	24, 442, 628
HpyCH4IV	ACGT	2 cut(s)	256, 408
HpyCH4V	TGCA	5 cut(s)	27, 308, 386, 557, 650
HpyF10VI	GCNNNNNNNGC	9 cut(s)	24, 221, 226, 235, 238, 247, 284, 392, 467
HpyF3I	CTNAG	4 cut(s)	457, 517, 525, 666
HpySE526I	ACGT	2 cut(s)	256, 408
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	3 cut(s)	511, 554, 613
HspAI	GCGC	1 cut(s)	224
KasI	GGCGCC	1 cut(s)	223
KflI	GGGWCCC	1 cut(s)	121
KroI	GCCGGC	1 cut(s)	220
KroNI	GCCGGC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	352
KspI	CCGCGG	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	319, 352
LmnI	GCTCC	5 cut(s)	83, 139, 188, 467, 670
Lsp1109I	GCAGC	5 cut(s)	370, 382, 541, 601, 699
MaeII	ACGT	2 cut(s)	256, 408
MaeIII	GTNAC	2 cut(s)	329, 520
MalI	GATC	2 cut(s)	321, 354
MboI	GATC	2 cut(s)	319, 352
MboII	GAAGA	2 cut(s)	116, 653
MhlI	GDGCHC	3 cut(s)	144, 458, 675
MluCI	AATT	2 cut(s)	543, 634
Mly113I	GGCGCC	1 cut(s)	224
MlyI	GAGTC	3 cut(s)	85, 153, 278
MmeI	TCCRAC	1 cut(s)	75
MroNI	GCCGGC	1 cut(s)	220
MspA1I	CMGCKG	3 cut(s)	229, 383, 690
MspI	CCGG	5 cut(s)	63, 136, 152, 177, 221
MspR9I	CCNGG	4 cut(s)	136, 137, 152, 178
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	9 cut(s)	24, 221, 226, 235, 238, 247, 284, 392, 467
NaeI	GCCGGC	1 cut(s)	222
NarI	GGCGCC	1 cut(s)	224
NciI	CCSGG	4 cut(s)	136, 137, 152, 178
NdeII	GATC	2 cut(s)	319, 352
NgoMIV	GCCGGC	1 cut(s)	220
NlaIII	CATG	3 cut(s)	511, 554, 613
NlaIV	GGNNCC	7 cut(s)	122, 123, 141, 181, 190, 225, 672
NmuCI	GTSAC	2 cut(s)	329, 520
PaeR7I	CTCGAG	1 cut(s)	161
PagI	TCATGA	1 cut(s)	507
PceI	AGGCCT	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdiI	GCCGGC	1 cut(s)	222
PkrI	GCNGC	8 cut(s)	228, 231, 240, 385, 397, 556, 616, 689
PleI	GAGTC	3 cut(s)	85, 153, 277
PluTI	GGCGCC	1 cut(s)	227
PpsI	GAGTC	3 cut(s)	85, 153, 277
PpuMI	RGGWCCY	1 cut(s)	121
PshAI	GACNNNNGTC	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	121
PspN4I	GGNNCC	7 cut(s)	122, 123, 141, 181, 190, 225, 672
PspPI	GGNCC	2 cut(s)	121, 180
PspPPI	RGGWCCY	1 cut(s)	121
PstI	CTGCAG	2 cut(s)	388, 559
PvuII	CAGCTG	2 cut(s)	383, 690
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SacII	CCGCGG	1 cut(s)	230
SatI	GCNGC	8 cut(s)	227, 230, 239, 384, 396, 555, 615, 688
Sau3AI	GATC	2 cut(s)	319, 352
Sau96I	GGNCC	2 cut(s)	121, 180
SchI	GAGTC	3 cut(s)	85, 153, 278
ScrFI	CCNGG	4 cut(s)	136, 137, 152, 178
SduI	GDGCHC	3 cut(s)	144, 458, 675
SfcI	CTRYAG	3 cut(s)	384, 415, 555
SfoI	GGCGCC	1 cut(s)	225
Sfr274I	CTCGAG	1 cut(s)	161
Sfr303I	CCGCGG	1 cut(s)	230
SgrAI	CRCCGGYG	1 cut(s)	62
SgrBI	CCGCGG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	121, 180
SlaI	CTCGAG	1 cut(s)	161
SmaI	CCCGGG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	543, 634
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	6 cut(s)	227, 229, 232, 238, 241, 260
SspDI	GGCGCC	1 cut(s)	223
StuI	AGGCCT	1 cut(s)	215
StyD4I	CCNGG	4 cut(s)	134, 135, 150, 176
TaaI	ACNGT	3 cut(s)	24, 442, 628
TaiI	ACGT	2 cut(s)	259, 411
TaqI	TCGA	4 cut(s)	102, 157, 162, 322
TasI	AATT	2 cut(s)	543, 634
TauI	GCSGC	3 cut(s)	229, 232, 241
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	2 cut(s)	329, 520
TseI	GCWGC	5 cut(s)	383, 395, 554, 614, 687
Tsp45I	GTSAC	2 cut(s)	329, 520
TspDTI	ATGAA	3 cut(s)	493, 524, 539
TspGWI	ACGGA	1 cut(s)	53
TspMI	CCCGGG	1 cut(s)	135
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	121, 180
XapI	RAATTY	1 cut(s)	634
XhoI	CTCGAG	1 cut(s)	161
XmaI	CCCGGG	1 cut(s)	135
XmiI	GTMKAC	2 cut(s)	405, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.