Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012621

Physical Location & Seq

Genomic Coordinates Forward (+)

2109181 .. 2112046

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG031700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTCTGACACGTTCTGCCAAGCGTGCAAGTGTTTCACGGAGGTTGTTGTCTCCGACCACGCGACCGGCGGCACCTCGTCGTGCTCCGAATGTGGGACTGTTGTGGTGGACGAGGTTGCCGAGTGGGTTTCTGTCCCCGACCGGGAAGACCCGACCCGGGAGCCCAGCAAGCCGGTTGGACCCGAGAGTGGGGTTTCCGGGTCCAATGGAGCAGCAGCCTCCGACGAGGAGGCATCGCCGGCGCGGCGGGGGAAGCGGCGGAGGAGGCCACGCCCTCCGCCTTTTGACGGGTTTGGTTCTATTGCTGCCGTGTCTGACAGGTTGGGAATTGTTGCTGCCATAAAGGATCGAGCCAATGAGATATATAAGAAGGTGGTTGATCAGAAACCTCTCAAATTTAGGACTCCGGATGCAGTTGTGGCTGCTTGCGTCTACATTGCCTGTAGACAAGAAAATAAGCCCCGTACTGTGAAAGAGATGTGCTCAGCAAATGGAGCTACCAAGAAAGAAGTTGCCAGGGCAAAAGACTTCATCATGAAATACTTGGAGACTGAGGGTCAGGAAATAGGAACTATTCATGCTGCAGACTTTCTGGTAAATCTGCTCAGAGAACTATTCATTTGTATCCGATATGTTGTTTTCTTGTCGGAGATGTTCTTTGTGCTACAACACAATTTCCATCCATTTTCTGTAGAGACGTTTTTGTTCCGTTCTTGGAATGTCAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIB TF_Zn_Ribbon

Protein Analysis

243

Amino Acids

26.95

Weight (kDa)

7.53

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIB	PF00382	96 - 172	6.3e-17	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012621)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880
rosa_chinensis	RchiOBHm_Chr7g0180171
rosa_laevigata	RLG00000005285
rosa_multiflora	Rmu_ssc0000119.1_g000040
rosa_roxburghii	Rroxscaffold_3G00273060
rosa_rugosa	Rorug06G0431200 Rorug06G0431300 Rorug06G0431400 Rorug06G0431500
rosa_samantha	Rh7AG031700 Rh7BG031700 Rh7CG033500 Rh7DG032100
rosa_wichuraiana	Rw7G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	2 cut(s)	432, 445
AccII	CGCG	2 cut(s)	62, 244
AccIII	TCCGGA	1 cut(s)	406
AciI	CCGC	6 cut(s)	69, 244, 247, 256, 259, 278
AclWI	GGATC	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	395
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	6 cut(s)	93, 142, 157, 188, 189, 287
AflIII	ACRYGT	1 cut(s)	9
AhdI	GACNNNNNGTC	1 cut(s)	555
AjnI	CCWGG	1 cut(s)	515
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
Alw21I	GWGCWC	2 cut(s)	86, 485
Alw26I	GTCTC	3 cut(s)	55, 542, 689
AlwI	GGATC	1 cut(s)	354
Ama87I	CYCGRG	2 cut(s)	156, 182
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	6 cut(s)	212, 215, 305, 335, 422, 581
ApoI	RAATTY	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	179, 201
AsuC2I	CCSGG	4 cut(s)	143, 157, 158, 199
AvaI	CYCGRG	2 cut(s)	156, 182
AvaII	GGWCC	2 cut(s)	179, 201
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	86, 485
BbvI	GCAGC	6 cut(s)	224, 227, 292, 322, 409, 568
BccI	CCATC	1 cut(s)	687
BceAI	ACGGC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	517
BciVI	GTATCC	1 cut(s)	635
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	4 cut(s)	143, 157, 158, 199
BcoDI	GTCTC	3 cut(s)	55, 542, 689
BfmI	CTRYAG	3 cut(s)	442, 582, 690
BfuI	GTATCC	1 cut(s)	635
BglI	GCCNNNNNGGC	1 cut(s)	244
BisI	GCNGC	9 cut(s)	70, 213, 216, 245, 257, 306, 336, 423, 582
BlpI	GCTNAGC	1 cut(s)	484
BlsI	GCNGC	9 cut(s)	71, 214, 217, 246, 258, 307, 337, 424, 583
Bme1390I	CCNGG	5 cut(s)	143, 157, 158, 199, 517
Bme18I	GGWCC	2 cut(s)	179, 201
BmeRI	GACNNNNNGTC	1 cut(s)	555
BmeT110I	CYCGRG	2 cut(s)	156, 182
BmgT120I	GGNCC	2 cut(s)	179, 201
BmiI	GGNNCC	4 cut(s)	73, 162, 181, 202
BmrFI	CCNGG	5 cut(s)	143, 157, 158, 199, 517
BmsI	GCATC	2 cut(s)	242, 400
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
Bpu1102I	GCTNAGC	1 cut(s)	484
BpuMI	CCSGG	4 cut(s)	143, 157, 158, 199
BsaJI	CCNNGG	2 cut(s)	156, 516
BsaWI	WCCGGW	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 142, 157, 188, 189, 287
Bse118I	RCCGGY	3 cut(s)	65, 172, 238
Bse3DI	GCAATG	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	517
BseDI	CCNNGG	2 cut(s)	156, 516
BseGI	GGATG	2 cut(s)	415, 679
BseLI	CCNNNNNNNGG	6 cut(s)	93, 142, 157, 188, 189, 287
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	3 cut(s)	498, 543, 619
BseRI	GAGGAG	2 cut(s)	242, 277
BseXI	GCAGC	6 cut(s)	224, 227, 292, 322, 409, 568
BseYI	CCCAGC	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	62, 244
Bsh1285I	CGRYCG	2 cut(s)	66, 142
BshFI	GGCC	1 cut(s)	268
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	2 cut(s)	66, 142
BsiHKAI	GWGCWC	2 cut(s)	86, 485
BsiHKCI	CYCGRG	2 cut(s)	156, 182
BsiSI	CCGG	7 cut(s)	66, 142, 157, 173, 198, 239, 407
BslFI	GGGAC	2 cut(s)	109, 119
BslI	CCNNNNNNNGG	6 cut(s)	93, 142, 157, 188, 189, 287
BsmAI	GTCTC	3 cut(s)	55, 542, 689
BsmBI	CGTCTC	1 cut(s)	689
BsmFI	GGGAC	2 cut(s)	109, 119
BsnI	GGCC	1 cut(s)	268
BsoBI	CYCGRG	2 cut(s)	156, 182
Bsp1286I	GDGCHC	3 cut(s)	86, 165, 485
Bsp13I	TCCGGA	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	346, 379
Bsp1720I	GCTNAGC	1 cut(s)	484
BspACI	CCGC	6 cut(s)	69, 244, 247, 256, 259, 278
BspANI	GGCC	1 cut(s)	268
BspCNI	CTCAG	3 cut(s)	497, 544, 618
BspEI	TCCGGA	1 cut(s)	406
BspFNI	CGCG	2 cut(s)	62, 244
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	4 cut(s)	73, 162, 181, 202
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	3 cut(s)	65, 172, 238
BssAI	RCCGGY	3 cut(s)	65, 172, 238
BssECI	CCNNGG	2 cut(s)	156, 516
BssMI	GATC	2 cut(s)	346, 379
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	100, 469
BstC8I	GCNNGC	4 cut(s)	25, 170, 240, 427
BstDEI	CTNAG	3 cut(s)	484, 552, 605
BstF5I	GGATG	2 cut(s)	415, 679
BstFNI	CGCG	2 cut(s)	62, 244
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	349, 382
BstMAI	GTCTC	3 cut(s)	55, 542, 689
BstMBI	GATC	2 cut(s)	346, 379
BstMCI	CGRYCG	2 cut(s)	66, 142
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 169, 239, 244, 253, 265, 419, 494
BstNI	CCWGG	1 cut(s)	517
BstSCI	CCNGG	5 cut(s)	141, 155, 156, 197, 515
BstSFI	CTRYAG	3 cut(s)	442, 582, 690
BstUI	CGCG	2 cut(s)	62, 244
BstV1I	GCAGC	6 cut(s)	224, 227, 292, 322, 409, 568
BstV2I	GAAGAC	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	415, 679
Cac8I	GCNNGC	4 cut(s)	25, 170, 240, 427
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	3 cut(s)	65, 172, 238
Cfr13I	GGNCC	2 cut(s)	179, 201
Cfr9I	CCCGGG	1 cut(s)	156
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	2 cut(s)	535, 578
CviJI	RGCY	8 cut(s)	163, 172, 218, 268, 353, 422, 460, 497
CviKI_1	RGCY	8 cut(s)	163, 172, 218, 268, 353, 422, 460, 497
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	3 cut(s)	484, 552, 605
DpnI	GATC	2 cut(s)	348, 381
DpnII	GATC	2 cut(s)	346, 379
DriI	GACNNNNNGTC	1 cut(s)	555
Eam1105I	GACNNNNNGTC	1 cut(s)	555
EciI	GGCGGA	2 cut(s)	267, 274
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	179, 201
Eco88I	CYCGRG	2 cut(s)	156, 182
EcoRII	CCWGG	1 cut(s)	515
EcoT38I	GRGCYC	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	689
FaeI	CATG	2 cut(s)	538, 581
FaiI	YATR	6 cut(s)	341, 364, 366, 536, 579, 633
FaqI	GGGAC	2 cut(s)	109, 119
FatI	CATG	2 cut(s)	534, 577
FauI	CCCGC	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	379
FblI	GTMKAC	2 cut(s)	432, 445
Fnu4HI	GCNGC	9 cut(s)	70, 213, 216, 245, 257, 306, 336, 423, 582
FokI	GGATG	2 cut(s)	422, 666
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	9 cut(s)	70, 213, 216, 245, 257, 306, 336, 423, 582
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	9 cut(s)	70, 213, 216, 245, 257, 306, 336, 423, 582
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	7 cut(s)	66, 142, 157, 173, 198, 239, 407
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	538, 581
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	7 cut(s)	66, 142, 157, 173, 198, 239, 407
Hpy166II	GTNNAC	3 cut(s)	109, 433, 446
Hpy188I	TCNGA	9 cut(s)	7, 55, 88, 223, 316, 384, 608, 629, 649
Hpy188III	TCNNGA	3 cut(s)	407, 535, 560
Hpy8I	GTNNAC	3 cut(s)	109, 433, 446
Hpy99I	CGWCG	2 cut(s)	82, 227
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	100, 469
HpyCH4IV	ACGT	2 cut(s)	11, 698
HpyCH4V	TGCA	3 cut(s)	27, 413, 584
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 169, 239, 244, 253, 265, 419, 494
HpyF3I	CTNAG	3 cut(s)	484, 552, 605
HpySE526I	ACGT	2 cut(s)	11, 698
Hsp92II	CATG	2 cut(s)	538, 581
HspAI	GCGC	1 cut(s)	242
Kpn2I	TCCGGA	1 cut(s)	406
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	346, 379
LmnI	GCTCC	4 cut(s)	89, 160, 209, 494
Lsp1109I	GCAGC	6 cut(s)	224, 227, 292, 322, 409, 568
LweI	GCATC	2 cut(s)	242, 400
MaeII	ACGT	2 cut(s)	11, 698
MalI	GATC	2 cut(s)	348, 381
MboI	GATC	2 cut(s)	346, 379
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	3 cut(s)	86, 165, 485
MluCI	AATT	3 cut(s)	327, 395, 673
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	4 cut(s)	78, 157, 246, 627
MreI	CGCCGGCG	1 cut(s)	238
MroI	TCCGGA	1 cut(s)	406
MroNI	GCCGGC	1 cut(s)	238
MspI	CCGG	7 cut(s)	66, 142, 157, 173, 198, 239, 407
MspR9I	CCNGG	5 cut(s)	143, 157, 158, 199, 517
MvaI	CCWGG	1 cut(s)	517
MvnI	CGCG	2 cut(s)	62, 244
MwoI	GCNNNNNNNGC	8 cut(s)	24, 169, 239, 244, 253, 265, 419, 494
NaeI	GCCGGC	1 cut(s)	240
NciI	CCSGG	4 cut(s)	143, 157, 158, 199
NdeII	GATC	2 cut(s)	346, 379
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	538, 581
NlaIV	GGNNCC	4 cut(s)	73, 162, 181, 202
NmeAIII	GCCGAG	1 cut(s)	145
PagI	TCATGA	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	240
PkrI	GCNGC	9 cut(s)	71, 214, 217, 246, 258, 307, 337, 424, 583
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	515
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	4 cut(s)	73, 162, 181, 202
PspPI	GGNCC	2 cut(s)	179, 201
PstI	CTGCAG	1 cut(s)	586
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
SatI	GCNGC	9 cut(s)	70, 213, 216, 245, 257, 306, 336, 423, 582
Sau3AI	GATC	2 cut(s)	346, 379
Sau96I	GGNCC	2 cut(s)	179, 201
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	5 cut(s)	143, 157, 158, 199, 517
SduI	GDGCHC	3 cut(s)	86, 165, 485
SetI	ASST	9 cut(s)	14, 45, 77, 117, 323, 375, 391, 499, 701
SfaNI	GCATC	2 cut(s)	242, 400
SfcI	CTRYAG	3 cut(s)	442, 582, 690
SgrAI	CRCCGGYG	1 cut(s)	238
SinI	GGWCC	2 cut(s)	179, 201
SmaI	CCCGGG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	327, 395, 673
SsiI	CCGC	6 cut(s)	69, 244, 247, 256, 259, 278
SspI	AATATT	1 cut(s)	728
StyD4I	CCNGG	5 cut(s)	141, 155, 156, 197, 515
TaaI	ACNGT	2 cut(s)	100, 469
TaiI	ACGT	2 cut(s)	14, 701
TaqI	TCGA	1 cut(s)	349
TasI	AATT	3 cut(s)	327, 395, 673
TauI	GCSGC	3 cut(s)	72, 247, 259
TseI	GCWGC	6 cut(s)	212, 215, 305, 335, 422, 581
TspDTI	ATGAA	4 cut(s)	520, 551, 566, 607
TspGWI	ACGGA	2 cut(s)	53, 698
TspMI	CCCGGG	1 cut(s)	156
VpaK11BI	GGWCC	2 cut(s)	179, 201
XapI	RAATTY	1 cut(s)	395
XmaI	CCCGGG	1 cut(s)	156
XmiI	GTMKAC	2 cut(s)	432, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.