Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012621

Physical Location & Seq

Genomic Coordinates Forward (+)

2171208 .. 2173353

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G002640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCTGACACGTTCTGCCAAGCGTGCAAGTGTTTCACGGAGGTTGTTTTCTCCGACCACGCGACCGGCGGCACCTCGTCGTGCTCCGAATGTGGGACTGTCGTGGTGGACGAGGTTCCCGAGTGGGTTTCTGTCCCCGACCGGGAAGACCCGACCCGGGAGCCCAGCCAGCCGGTTGGACCCGAGAGTGGGGTTTCCGGGTCCAATGGAGCAGCAGCCTCCGACGACGAGGAGGCATCGCAGGCGCGGCGGGGGAAGCGGCGGAGGAGGCCACGCCCTCCGCCTTTTGACTGGTTTGGTTCTATTGCTGCCGATCGAGCCAATGAGATATATAAGAAGGTGGTTGATCAGAAACCTCTCAAATTTAGGACTCCGGATGCAGTTGTGGCTGCTTGCGTCTACATTGCCTGTAGACAAGAAAATAAGCCCCGCACTGTGAAAGAGATGTGCTCAGCAAATGGAGCTACCAAGAAAGAAGTTGCCAGGGCAAAAGACTTCATCATGAAATACTTGGAGACTGAGGGTCAGGAAATAGGAACTATTCATGCTGCAGACTTTCTGAGACGTTTTTGTTCCGTTCTTGGAATGTCAAATATAGAAGTCATGGCTGCCCAAGAAACAGTGAAGAAATCTGAAGAACTTGTTTTAAGGAGGAGCCCAATATCGCTGGCAGCTGTTGTCATTTATATCATAACTCAACTATCAAATGACAAAAAGGGTGTTAAAGATATTGCGTTTGTCACTAGAGTGGCCGAAGCGACCATAAAAAATTCGTACAAAGATCTGTATCCTCATCTGTCAGAGTTATACCAACCTGGTTTGCCAAGGAGGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIB TF_Zn_Ribbon

Protein Analysis

279

Amino Acids

30.85

Weight (kDa)

8.31

Isoelectric Point (pI)

57.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIB	PF00382	103 - 161	1.3e-13	Transcription factor TFIIB repeat
TFIIB	PF00382	180 - 264	7.5e-12	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012621)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880 FvH4_5g15880
rosa_chinensis	RchiOBHm_Chr7g0180171
rosa_laevigata	RLG00000005285
rosa_multiflora	Rmu_ssc0000119.1_g000040
rosa_roxburghii	Rroxscaffold_3G00273060
rosa_rugosa	Rorug06G0431200 Rorug06G0431300 Rorug06G0431400 Rorug06G0431500
rosa_samantha	Rh7AG031700 Rh7BG031700 Rh7CG033500 Rh7DG032100
rosa_wichuraiana	Rw7G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	2 cut(s)	399, 412
AccII	CGCG	2 cut(s)	62, 247
AccIII	TCCGGA	1 cut(s)	373
AciI	CCGC	7 cut(s)	69, 247, 250, 259, 262, 281, 430
AcoI	YGGCCR	1 cut(s)	750
AcsI	RAATTY	2 cut(s)	362, 769
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	5 cut(s)	93, 142, 157, 188, 189
AflIII	ACRYGT	1 cut(s)	9
AhdI	GACNNNNNGTC	1 cut(s)	522
AjnI	CCWGG	2 cut(s)	482, 814
AleI	CACNNNNGTG	1 cut(s)	746
AluBI	AGCT	2 cut(s)	464, 674
AluI	AGCT	2 cut(s)	464, 674
Alw21I	GWGCWC	2 cut(s)	86, 452
Alw26I	GTCTC	2 cut(s)	509, 556
Ama87I	CYCGRG	3 cut(s)	119, 156, 182
Aor13HI	TCCGGA	1 cut(s)	373
AoxI	GGCC	2 cut(s)	269, 750
ApeKI	GCWGC	7 cut(s)	212, 215, 308, 389, 548, 608, 671
ApoI	RAATTY	2 cut(s)	362, 769
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	179, 201
AsuC2I	CCSGG	4 cut(s)	143, 157, 158, 199
AvaI	CYCGRG	3 cut(s)	119, 156, 182
AvaII	GGWCC	2 cut(s)	179, 201
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	165, 659
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	86, 452
BbvI	GCAGC	7 cut(s)	224, 227, 295, 376, 535, 595, 683
BciT130I	CCWGG	2 cut(s)	484, 816
BciVI	GTATCC	1 cut(s)	798
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	4 cut(s)	143, 157, 158, 199
BcoDI	GTCTC	2 cut(s)	509, 556
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	2 cut(s)	409, 549
BfuI	GTATCC	1 cut(s)	798
BglII	AGATCT	1 cut(s)	781
BlpI	GCTNAGC	1 cut(s)	451
Bme1390I	CCNGG	6 cut(s)	143, 157, 158, 199, 484, 816
Bme18I	GGWCC	2 cut(s)	179, 201
BmeRI	GACNNNNNGTC	1 cut(s)	522
BmeT110I	CYCGRG	3 cut(s)	119, 156, 182
BmgT120I	GGNCC	2 cut(s)	179, 201
BmiI	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 656
BmrFI	CCNGG	6 cut(s)	143, 157, 158, 199, 484, 816
BmsI	GCATC	2 cut(s)	245, 367
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
Bpu1102I	GCTNAGC	1 cut(s)	451
BpuMI	CCSGG	4 cut(s)	143, 157, 158, 199
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	3 cut(s)	156, 483, 824
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	5 cut(s)	93, 142, 157, 188, 189
Bse118I	RCCGGY	2 cut(s)	65, 172
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	786
BseAI	TCCGGA	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	484, 816
BseDI	CCNNGG	3 cut(s)	156, 483, 824
BseGI	GGATG	1 cut(s)	382
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	5 cut(s)	93, 142, 157, 188, 189
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	3 cut(s)	465, 510, 551
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	3 cut(s)	245, 280, 667
BseXI	GCAGC	7 cut(s)	224, 227, 295, 376, 535, 595, 683
BseYI	CCCAGC	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	62, 247
Bsh1285I	CGRYCG	3 cut(s)	66, 142, 316
BshFI	GGCC	2 cut(s)	271, 752
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	3 cut(s)	66, 142, 316
BsiHKAI	GWGCWC	2 cut(s)	86, 452
BsiHKCI	CYCGRG	3 cut(s)	119, 156, 182
BsiSI	CCGG	6 cut(s)	66, 142, 157, 173, 198, 374
BslFI	GGGAC	2 cut(s)	109, 119
BslI	CCNNNNNNNGG	5 cut(s)	93, 142, 157, 188, 189
BsmAI	GTCTC	2 cut(s)	509, 556
BsmBI	CGTCTC	1 cut(s)	556
BsmFI	GGGAC	2 cut(s)	109, 119
BsnI	GGCC	2 cut(s)	271, 752
BsoBI	CYCGRG	3 cut(s)	119, 156, 182
Bsp1286I	GDGCHC	4 cut(s)	86, 165, 452, 659
Bsp13I	TCCGGA	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	313, 346, 781
Bsp1720I	GCTNAGC	1 cut(s)	451
BspACI	CCGC	7 cut(s)	69, 247, 250, 259, 262, 281, 430
BspANI	GGCC	2 cut(s)	271, 752
BspCNI	CTCAG	3 cut(s)	464, 511, 552
BspEI	TCCGGA	1 cut(s)	373
BspFNI	CGCG	2 cut(s)	62, 247
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 656
BspMAI	CTGCAG	1 cut(s)	553
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	2 cut(s)	65, 172
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	2 cut(s)	65, 172
BssECI	CCNNGG	3 cut(s)	156, 483, 824
BssMI	GATC	3 cut(s)	313, 346, 781
BssT1I	CCWWGG	1 cut(s)	824
Bst2UI	CCWGG	2 cut(s)	484, 816
Bst4CI	ACNGT	3 cut(s)	100, 436, 622
BstC8I	GCNNGC	5 cut(s)	25, 170, 243, 394, 669
BstDEI	CTNAG	3 cut(s)	451, 519, 560
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	2 cut(s)	62, 247
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	3 cut(s)	316, 349, 784
BstMAI	GTCTC	2 cut(s)	509, 556
BstMBI	GATC	3 cut(s)	313, 346, 781
BstMCI	CGRYCG	3 cut(s)	66, 142, 316
BstMWI	GCNNNNNNNGC	9 cut(s)	24, 169, 242, 247, 256, 268, 317, 386, 461
BstNI	CCWGG	2 cut(s)	484, 816
BstSCI	CCNGG	6 cut(s)	141, 155, 156, 197, 482, 814
BstSFI	CTRYAG	2 cut(s)	409, 549
BstUI	CGCG	2 cut(s)	62, 247
BstV1I	GCAGC	7 cut(s)	224, 227, 295, 376, 535, 595, 683
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	781
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	798
BsuRI	GGCC	2 cut(s)	271, 752
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	432, 627
Cac8I	GCNNGC	5 cut(s)	25, 170, 243, 394, 669
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	2 cut(s)	65, 172
Cfr13I	GGNCC	2 cut(s)	179, 201
Cfr9I	CCCGGG	1 cut(s)	156
CseI	GACGC	1 cut(s)	385
CsiI	ACCWGGT	1 cut(s)	814
Csp6I	GTAC	1 cut(s)	775
CviAII	CATG	3 cut(s)	502, 545, 604
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	3 cut(s)	451, 519, 560
DpnI	GATC	3 cut(s)	315, 348, 783
DpnII	GATC	3 cut(s)	313, 346, 781
DriI	GACNNNNNGTC	1 cut(s)	522
EaeI	YGGCCR	1 cut(s)	750
Eam1105I	GACNNNNNGTC	1 cut(s)	522
EciI	GGCGGA	2 cut(s)	270, 277
Eco130I	CCWWGG	1 cut(s)	824
Eco24I	GRGCYC	2 cut(s)	165, 659
Eco47I	GGWCC	2 cut(s)	179, 201
Eco57I	CTGAAG	1 cut(s)	654
Eco88I	CYCGRG	3 cut(s)	119, 156, 182
EcoRII	CCWGG	2 cut(s)	482, 814
EcoT14I	CCWWGG	1 cut(s)	824
EcoT38I	GRGCYC	2 cut(s)	165, 659
ErhI	CCWWGG	1 cut(s)	824
Esp3I	CGTCTC	1 cut(s)	556
FaeI	CATG	3 cut(s)	505, 548, 607
FaqI	GGGAC	2 cut(s)	109, 119
FatI	CATG	3 cut(s)	501, 544, 603
FauI	CCCGC	2 cut(s)	243, 437
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	2 cut(s)	399, 412
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	2 cut(s)	165, 659
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	271, 752
HapII	CCGG	6 cut(s)	66, 142, 157, 173, 198, 374
HgaI	GACGC	1 cut(s)	385
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	3 cut(s)	505, 548, 607
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	6 cut(s)	66, 142, 157, 173, 198, 374
Hpy166II	GTNNAC	3 cut(s)	109, 400, 413
Hpy188I	TCNGA	8 cut(s)	7, 55, 88, 223, 351, 561, 634, 802
Hpy188III	TCNNGA	4 cut(s)	119, 374, 502, 527
Hpy8I	GTNNAC	3 cut(s)	109, 400, 413
Hpy99I	CGWCG	3 cut(s)	82, 227, 230
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	3 cut(s)	100, 436, 622
HpyCH4IV	ACGT	2 cut(s)	11, 565
HpyCH4V	TGCA	3 cut(s)	27, 380, 551
HpyF10VI	GCNNNNNNNGC	9 cut(s)	24, 169, 242, 247, 256, 268, 317, 386, 461
HpyF3I	CTNAG	3 cut(s)	451, 519, 560
HpySE526I	ACGT	2 cut(s)	11, 565
Hsp92II	CATG	3 cut(s)	505, 548, 607
HspAI	GCGC	1 cut(s)	245
Kpn2I	TCCGGA	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	313, 346, 781
LmnI	GCTCC	5 cut(s)	89, 160, 209, 461, 654
Lsp1109I	GCAGC	7 cut(s)	224, 227, 295, 376, 535, 595, 683
LweI	GCATC	2 cut(s)	245, 367
MabI	ACCWGGT	1 cut(s)	814
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	2 cut(s)	11, 565
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	3 cut(s)	315, 348, 783
MboI	GATC	3 cut(s)	313, 346, 781
MboII	GAAGA	3 cut(s)	158, 637, 647
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	4 cut(s)	86, 165, 452, 659
MluCI	AATT	2 cut(s)	362, 769
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	3 cut(s)	78, 157, 246
MroI	TCCGGA	1 cut(s)	373
MseI	TTAA	2 cut(s)	647, 723
MslI	CAYNNNNRTG	1 cut(s)	746
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	6 cut(s)	66, 142, 157, 173, 198, 374
MspR9I	CCNGG	6 cut(s)	143, 157, 158, 199, 484, 816
MvaI	CCWGG	2 cut(s)	484, 816
MvnI	CGCG	2 cut(s)	62, 247
MwoI	GCNNNNNNNGC	9 cut(s)	24, 169, 242, 247, 256, 268, 317, 386, 461
NciI	CCSGG	4 cut(s)	143, 157, 158, 199
NdeII	GATC	3 cut(s)	313, 346, 781
NlaIII	CATG	3 cut(s)	505, 548, 607
NlaIV	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 656
NmuCI	GTSAC	1 cut(s)	739
OliI	CACNNNNGTG	1 cut(s)	746
PagI	TCATGA	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 117
Ple19I	CGATCG	1 cut(s)	316
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
Psp6I	CCWGG	2 cut(s)	482, 814
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	2 cut(s)	482, 814
PspN4I	GGNNCC	6 cut(s)	73, 117, 162, 181, 202, 656
PspPI	GGNCC	2 cut(s)	179, 201
PstI	CTGCAG	1 cut(s)	553
PsuI	RGATCY	1 cut(s)	781
PvuI	CGATCG	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
RseI	CAYNNNNRTG	1 cut(s)	746
SaqAI	TTAA	2 cut(s)	647, 723
Sau3AI	GATC	3 cut(s)	313, 346, 781
Sau96I	GGNCC	2 cut(s)	179, 201
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	6 cut(s)	143, 157, 158, 199, 484, 816
SduI	GDGCHC	4 cut(s)	86, 165, 452, 659
SexAI	ACCWGGT	1 cut(s)	814
SfaNI	GCATC	2 cut(s)	245, 367
SfcI	CTRYAG	2 cut(s)	409, 549
SinI	GGWCC	2 cut(s)	179, 201
SmaI	CCCGGG	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	746
Sse9I	AATT	2 cut(s)	362, 769
SsiI	CCGC	7 cut(s)	69, 247, 250, 259, 262, 281, 430
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	6 cut(s)	141, 155, 156, 197, 482, 814
StyI	CCWWGG	1 cut(s)	824
TaaI	ACNGT	3 cut(s)	100, 436, 622
TaiI	ACGT	2 cut(s)	14, 568
TaqI	TCGA	1 cut(s)	316
TasI	AATT	2 cut(s)	362, 769
TauI	GCSGC	3 cut(s)	72, 250, 262
Tru1I	TTAA	2 cut(s)	647, 723
Tru9I	TTAA	2 cut(s)	647, 723
TscAI	CASTG	2 cut(s)	439, 627
TseFI	GTSAC	1 cut(s)	739
TseI	GCWGC	7 cut(s)	212, 215, 308, 389, 548, 608, 671
Tsp45I	GTSAC	1 cut(s)	739
TspDTI	ATGAA	3 cut(s)	487, 518, 533
TspGWI	ACGGA	2 cut(s)	53, 565
TspMI	CCCGGG	1 cut(s)	156
TspRI	CASTG	2 cut(s)	439, 627
VpaK11BI	GGWCC	2 cut(s)	179, 201
XapI	RAATTY	2 cut(s)	362, 769
XmaI	CCCGGG	1 cut(s)	156
XmiI	GTMKAC	2 cut(s)	399, 412
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.