FvH4_5g22170

Chaperone protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
13516208 .. 13521493
5286 bp
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UTR
Exon/CDS
Intron
FvH4_5g22170.t4

Sequence Viewer

Length: 2016 bp
ATGGAGGCATTGTCGACATTGCAACTTATGAATGAGCTTCGTGAAGACAAGGAGGAGTTGGAGATCACTTATGGTGTTCAAATCCCCGAAGACACCTTGTCTTTGGCTTGCAGCATTGCCATGAGATACCCTGATGTATTATTGGCAGCCACCAAAATCGTTTGTTATAAGAGTGAGAAGTCACTACCGGGACAGCTGGCTGTTCACCTCTTAGCTAAAGCTTGTTTTGAACTTGTGAATGATTTTGACATGGGTGTAGAAGATTGTTTAGAAGTATACCCACTCATCCGTGCACATATTGAGTTGAATGAATGTAAGAAAGAAAAAGCTCCTACTAGCCAATGCTGGATCAGCTATGTAACAGATGAGTATGAAGATCTTAAGGAAAAGTGGCATACACTCGAGGAGAAATGGAAGTTAGTCTTGCAGTCGAGGCGGAGATCAGAAAGAAGAACTCAAGAAGTAGAAGCATTGAAGCATGTACGCCTAAATCTTCTTTCTTATTTGCAGCAACCAGAAATGGTGATAGCAACAGGCCTTATGCAGCTTTTTTCCCTTGTAAATGTGCTTGGCAAAGATCAACATGAGCTGTCAACTATTTACCCTTTTATGATAGCCAAGGTAGCGTGGTCCTTGACTGGTATTCCAAAATCATGGTTACTTCATTCTACAGAACCAAAATTTTTCCCAGATATTGGCCCAACATTTGCAAAGAGGGTTGTGGGGCAAGAGCTTCCCAAACTTGCTGTCACCAGTGCCTTGACAGAGCTTAGGTCTGGGGCACACCCAATTGCTTCGTTTCTCTTTCTTTGCCGGCCTGGTTGTGGCAGGACAGAGCTTGCTAAAGCTGTTGCTGAGCTATTTTTTGATGCAAAGGACATGTTGACTGAACTCAACATGGTGAAATATAAGTGTGCAGAGCCAAATCCTGTATCAGATGAAGATGAATATGGATATGACTTCCCACGGTATGAACCAAAGTCAGAATTTAGGGAGCATCTCATAGAAGCTGTGAAGAAGAGGCCTTTTGGCATCGTCTTGCTTGATAACATTGAAGTTGCTCGTCCATCTGATGTAGACATTTTGGTTGAAATTCTAACCCATGGTAGACTGAGCGATGGGAAAGGACACTTTGTTGATTTCACTAAGATGTTGATTATTCTGACATCAAACGTTGTGCAAGATCCATTTATGTTGCGGTGTTGCAATTGTGAGGAGATGGTTGAAAAGTTTTTTTTTAAAGACTTGGATGAAGATTCACCAAATGGCGTTTGCCGTCACCTTTTGATTCTAAAAAAGGCAAGAAAGCATTTTAGGACTGAGTTATTTGAAGCTCTGAATGATGTTGTTGCATTTGAGCCCCTTTCACTTCTGCACTACAGATGTGTTACGAGATTGTTGTTGAGGGACATCGCATGCTCCATTACAGAAAAACACCTCATATTATGCCCGTCTGAAGCTGCAGTTAGAGCTATATTACTCGATTCGGATTTTATGCGTGATGGCACAAAGAATATTAAGAGCTTTTTTCAGACCAGTGTAGAAGCTATGGTAAAGGATCGCCTTAATGAGATTGATGACATCTGTGTCGTCTATATGGATGCCTCCGTGGGGACAGAGGAGTTGTCTTATGTTAGATTTGAGAAGATTAGTGCATTAGATTATTATGATCAGGAAATAAAGGACTTCCTAAAATCTTCAAGTGAACTAAGATCAACGTACAGGAAAGAGAAGGTCTGGGTGAAGAAAGTTTCCATGCTGAAACGAAGTTTTCCTGTGTTGTTGGCTAATGAAAATTCAGTGAAGGATCCCGCCAAAGTGTTTAAAGTTCTGCAAATAATAGACAGTCTATTAGAAAATGCAACTCATGAATATACCACAGTGAACGCATTTGGCTCATTGGAGGAAACTGATGAACCTCGGGATGATCAATTGGAGAAATCTAAGAAGATGGCTAAGAATGGTATCAATAGTCTGCGAGCATCTTTGTCCAATCTAAAGGTACACCAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

672

Amino Acids

76.89

Weight (kDa)

5.58

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_2 PF07724 263 - 395 5.1e-20 AAA domain (Cdc48 subfamily)
AAA_2 PF07724 697 - 850 2.8e-10 AAA domain (Cdc48 subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016348)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AasI GACNNNNNNGTC 1 cut(s) 1586
AccB7I CCANNNNNTGG 1 cut(s) 695
AccI GTMKAC 4 cut(s) 14, 276, 1077, 1108
AciI CCGC 3 cut(s) 436, 1198, 1812
AclI AACGTT 1 cut(s) 1173
AclWI GGATC 5 cut(s) 356, 1178, 1566, 1802, 1815
AcsI RAATTY 4 cut(s) 680, 986, 1092, 1795
AcuI CTGAAG 1 cut(s) 1476
AfaI GTAC 3 cut(s) 483, 1721, 2004
AfiI CCNNNNNNNGG 3 cut(s) 695, 824, 1611
AflII CTTAAG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 879
AgsI TTSAA 9 cut(s) 80, 230, 307, 475, 1055, 1091, 1226, 1331, 1701
AhdI GACNNNNNGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 817
Alw21I GWGCWC 1 cut(s) 295
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 5 cut(s) 356, 1178, 1566, 1802, 1815
Ama87I CYCGRG 2 cut(s) 401, 1920
AoxI GGCC 4 cut(s) 535, 697, 815, 1022
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 5 cut(s) 111, 146, 508, 544, 1460
ApoI RAATTY 4 cut(s) 680, 986, 1092, 1795
ArsI GACNNNNNNTTYG 2 cut(s) 732, 764
AspS9I GGNCC 2 cut(s) 630, 698
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 7 cut(s) 197, 535, 742, 913, 1251, 1271, 1753
AvaI CYCGRG 2 cut(s) 401, 1920
AvaII GGWCC 1 cut(s) 630
BaeGI GKGCMC 2 cut(s) 295, 784
BamHI GGATCC 1 cut(s) 1807
BanII GRGCYC 1 cut(s) 1362
BbsI GAAGAC 2 cut(s) 51, 96
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 5 cut(s) 123, 158, 520, 556, 1447
BccI CCATC 5 cut(s) 1075, 1112, 1213, 1496, 1945
BceAI ACGGC 1 cut(s) 1260
BciT130I CCWGG 1 cut(s) 819
BclI TGATCA 2 cut(s) 1669, 1927
BcnI CCSGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 3 cut(s) 669, 1378, 1461
BfrI CTTAAG 1 cut(s) 380
BglII AGATCT 1 cut(s) 376
BisI GCNGC 5 cut(s) 112, 147, 509, 545, 1461
BlpI GCTNAGC 1 cut(s) 855
BlsI GCNGC 5 cut(s) 113, 148, 510, 546, 1462
Bme1390I CCNGG 2 cut(s) 189, 819
Bme18I GGWCC 1 cut(s) 630
BmeRI GACNNNNNGTC 1 cut(s) 97
BmeT110I CYCGRG 2 cut(s) 401, 1920
BmgT120I GGNCC 2 cut(s) 630, 698
BmiI GGNNCC 1 cut(s) 1809
BmrFI CCNGG 2 cut(s) 189, 819
BmsI GCATC 5 cut(s) 859, 1006, 1041, 1591, 1991
BpiI GAAGAC 2 cut(s) 51, 96
Bpu10I CCTNAGC 1 cut(s) 770
Bpu1102I GCTNAGC 1 cut(s) 855
BpuEI CTTGAG 1 cut(s) 441
BpuMI CCSGG 1 cut(s) 189
BsaJI CCNNGG 5 cut(s) 618, 965, 1102, 1608, 1919
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 695, 824, 1611
Bse118I RCCGGY 1 cut(s) 813
Bse1I ACTGG 3 cut(s) 643, 753, 1536
Bse3DI GCAATG 2 cut(s) 17, 114
BseBI CCWGG 1 cut(s) 819
BseDI CCNNGG 5 cut(s) 618, 965, 1102, 1608, 1919
BseGI GGATG 4 cut(s) 285, 1255, 1606, 1930
BseLI CCNNNNNNNGG 3 cut(s) 695, 824, 1611
BseMI GCAATG 2 cut(s) 17, 114
BseMII CTCAG 3 cut(s) 846, 1103, 1311
BseNI ACTGG 3 cut(s) 643, 753, 1536
BseRI GAGGAG 4 cut(s) 68, 419, 1229, 1634
BseSI GKGCMC 2 cut(s) 295, 784
BseXI GCAGC 5 cut(s) 123, 158, 520, 556, 1447
BsgI GTGCAG 2 cut(s) 936, 1358
BshFI GGCC 4 cut(s) 537, 699, 817, 1024
BsiHKAI GWGCWC 1 cut(s) 295
BsiHKCI CYCGRG 2 cut(s) 401, 1920
BsiSI CCGG 2 cut(s) 188, 814
BslFI GGGAC 3 cut(s) 204, 1421, 1627
BslI CCNNNNNNNGG 3 cut(s) 695, 824, 1611
BsmFI GGGAC 3 cut(s) 204, 1421, 1627
BsnI GGCC 4 cut(s) 537, 699, 817, 1024
BsoBI CYCGRG 2 cut(s) 401, 1920
Bsp1286I GDGCHC 3 cut(s) 295, 784, 1362
Bsp1720I GCTNAGC 1 cut(s) 855
Bsp19I CCATGG 1 cut(s) 1102
BspACI CCGC 3 cut(s) 436, 1198, 1812
BspANI GGCC 4 cut(s) 537, 699, 817, 1024
BspCNI CTCAG 3 cut(s) 847, 1104, 1312
BspHI TCATGA 1 cut(s) 1867
BspLI GGNNCC 1 cut(s) 1809
BspMAI CTGCAG 1 cut(s) 1465
BspPI GGATC 5 cut(s) 356, 1178, 1566, 1802, 1815
BspTI CTTAAG 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 17, 114
BsrFI RCCGGY 1 cut(s) 813
BsrI ACTGG 3 cut(s) 643, 753, 1536
BssAI RCCGGY 1 cut(s) 813
BssECI CCNNGG 5 cut(s) 618, 965, 1102, 1608, 1919
BssNAI GTATAC 1 cut(s) 277
BssT1I CCWWGG 2 cut(s) 618, 1102
Bst1107I GTATAC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 3 cut(s) 969, 1847, 1882
Bst6I CTCTTC 1 cut(s) 1013
BstAFI CTTAAG 1 cut(s) 380
BstC8I GCNNGC 6 cut(s) 109, 198, 815, 840, 1417, 1980
BstDEI CTNAG 9 cut(s) 211, 770, 855, 1112, 1146, 1320, 1709, 1944, 1956
BstDSI CCRYGG 3 cut(s) 965, 1102, 1608
BstF5I GGATG 4 cut(s) 285, 1255, 1606, 1930
BstMWI GCNNNNNNNGC 4 cut(s) 351, 433, 623, 1469
BstNI CCWGG 1 cut(s) 819
BstNSI RCATGY 3 cut(s) 482, 883, 1419
BstSCI CCNGG 2 cut(s) 187, 817
BstSFI CTRYAG 3 cut(s) 669, 1378, 1461
BstSLI GKGCMC 2 cut(s) 295, 784
BstV1I GCAGC 5 cut(s) 123, 158, 520, 556, 1447
BstV2I GAAGAC 2 cut(s) 51, 96
BstX2I RGATCY 3 cut(s) 376, 1183, 1807
BstXI CCANNNNNNTGG 1 cut(s) 654
BstYI RGATCY 3 cut(s) 376, 1183, 1807
BstZ17I GTATAC 1 cut(s) 277
BsuRI GGCC 4 cut(s) 537, 699, 817, 1024
BtgI CCRYGG 3 cut(s) 965, 1102, 1608
BtgZI GCGATG 2 cut(s) 1131, 1396
BtsCI GGATG 4 cut(s) 285, 1255, 1606, 1930
BtsIMutI CAGTG 4 cut(s) 760, 1543, 1806, 1887
Cac8I GCNNGC 6 cut(s) 109, 198, 815, 840, 1417, 1980
CciI TCATGA 1 cut(s) 1867
Cfr10I RCCGGY 1 cut(s) 813
Cfr13I GGNCC 2 cut(s) 630, 698
Csp6I GTAC 3 cut(s) 482, 1720, 2003
CviQI GTAC 3 cut(s) 482, 1720, 2003
DdeI CTNAG 9 cut(s) 211, 770, 855, 1112, 1146, 1320, 1709, 1944, 1956
DraI TTTAAA 2 cut(s) 1240, 1825
DrdI GACNNNNNNGTC 1 cut(s) 1586
DriI GACNNNNNGTC 1 cut(s) 97
DseDI GACNNNNNNGTC 1 cut(s) 1586
Eam1104I CTCTTC 1 cut(s) 1013
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 1013
EciI GGCGGA 1 cut(s) 451
Eco130I CCWWGG 2 cut(s) 618, 1102
Eco147I AGGCCT 2 cut(s) 537, 1024
Eco24I GRGCYC 1 cut(s) 1362
Eco47I GGWCC 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 1476
Eco88I CYCGRG 2 cut(s) 401, 1920
EcoRII CCWGG 1 cut(s) 817
EcoT14I CCWWGG 2 cut(s) 618, 1102
EcoT38I GRGCYC 1 cut(s) 1362
ErhI CCWWGG 2 cut(s) 618, 1102
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 3 cut(s) 204, 1421, 1627
FauI CCCGC 1 cut(s) 1819
FbaI TGATCA 2 cut(s) 1669, 1927
FblI GTMKAC 4 cut(s) 14, 276, 1077, 1108
Fnu4HI GCNGC 5 cut(s) 112, 147, 509, 545, 1461
FokI GGATG 4 cut(s) 272, 1262, 1613, 1937
FriOI GRGCYC 1 cut(s) 1362
Fsp4HI GCNGC 5 cut(s) 112, 147, 509, 545, 1461
FspBI CTAG 1 cut(s) 336
GluI GCNGC 5 cut(s) 112, 147, 509, 545, 1461
HaeIII GGCC 4 cut(s) 537, 699, 817, 1024
HapII CCGG 2 cut(s) 188, 814
HincII GTYRAC 3 cut(s) 15, 594, 885
HindII GTYRAC 3 cut(s) 15, 594, 885
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 3 cut(s) 1256, 1288, 1484
HpaII CCGG 2 cut(s) 188, 814
HphI GGTGA 7 cut(s) 197, 535, 742, 913, 1251, 1271, 1753
Hpy188I TCNGA 9 cut(s) 445, 937, 985, 1072, 1164, 1338, 1456, 1489, 1533
Hpy188III TCNNGA 5 cut(s) 41, 458, 1673, 1868, 1922
HpyAV CCTTC 2 cut(s) 1726, 1798
HpyCH4III ACNGT 3 cut(s) 969, 1847, 1882
HpyCH4IV ACGT 2 cut(s) 1173, 1718
HpyF10VI GCNNNNNNNGC 4 cut(s) 351, 433, 623, 1469
HpyF3I CTNAG 9 cut(s) 211, 770, 855, 1112, 1146, 1320, 1709, 1944, 1956
HpySE526I ACGT 2 cut(s) 1173, 1718
KroI GCCGGC 1 cut(s) 813
KroNI GCCGGC 1 cut(s) 815
Ksp22I TGATCA 2 cut(s) 1669, 1927
LmnI GCTCC 3 cut(s) 334, 994, 1424
Lsp1109I GCAGC 5 cut(s) 123, 158, 520, 556, 1447
LweI GCATC 5 cut(s) 859, 1006, 1041, 1591, 1991
MaeI CTAG 1 cut(s) 336
MaeII ACGT 2 cut(s) 1173, 1718
MaeIII GTNAC 6 cut(s) 180, 358, 657, 748, 1277, 1387
MfeI CAATTG 3 cut(s) 789, 1207, 1931
MflI RGATCY 3 cut(s) 376, 1183, 1807
MhlI GDGCHC 3 cut(s) 295, 784, 1362
MluCI AATT 7 cut(s) 680, 789, 986, 1092, 1207, 1795, 1931
MmeI TCCRAC 1 cut(s) 39
MroNI GCCGGC 1 cut(s) 813
MseI TTAA 5 cut(s) 381, 1239, 1518, 1566, 1824
MslI CAYNNNNRTG 2 cut(s) 119, 1148
MspA1I CMGCKG 1 cut(s) 196
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 2 cut(s) 188, 814
MspR9I CCNGG 2 cut(s) 189, 819
MunI CAATTG 3 cut(s) 789, 1207, 1931
MvaI CCWGG 1 cut(s) 819
MwoI GCNNNNNNNGC 4 cut(s) 351, 433, 623, 1469
NaeI GCCGGC 1 cut(s) 815
NciI CCSGG 1 cut(s) 189
NcoI CCATGG 1 cut(s) 1102
NgoMIV GCCGGC 1 cut(s) 813
NlaIV GGNNCC 1 cut(s) 1809
NmuCI GTSAC 3 cut(s) 180, 748, 1277
NspI RCATGY 3 cut(s) 482, 883, 1419
PaeI GCATGC 1 cut(s) 1419
PaeR7I CTCGAG 1 cut(s) 401
PagI TCATGA 1 cut(s) 1867
PceI AGGCCT 2 cut(s) 537, 1024
PciI ACATGT 1 cut(s) 879
PdiI GCCGGC 1 cut(s) 815
PfeI GAWTC 3 cut(s) 1256, 1288, 1484
PflMI CCANNNNNTGG 1 cut(s) 695
PkrI GCNGC 5 cut(s) 113, 148, 510, 546, 1462
PscI ACATGT 1 cut(s) 879
PsiI TTATAA 1 cut(s) 168
Psp1406I AACGTT 1 cut(s) 1173
Psp6I CCWGG 1 cut(s) 817
PspGI CCWGG 1 cut(s) 817
PspN4I GGNNCC 1 cut(s) 1809
PspPI GGNCC 2 cut(s) 630, 698
PspXI VCTCGAGB 1 cut(s) 401
PstI CTGCAG 1 cut(s) 1465
PsuI RGATCY 3 cut(s) 376, 1183, 1807
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 3 cut(s) 483, 1721, 2004
RsaNI GTAC 3 cut(s) 482, 1720, 2003
RseI CAYNNNNRTG 2 cut(s) 119, 1148
SalI GTCGAC 1 cut(s) 13
SaqAI TTAA 5 cut(s) 381, 1239, 1518, 1566, 1824
SatI GCNGC 5 cut(s) 112, 147, 509, 545, 1461
Sau96I GGNCC 2 cut(s) 630, 698
ScrFI CCNGG 2 cut(s) 189, 819
SduI GDGCHC 3 cut(s) 295, 784, 1362
SfaNI GCATC 5 cut(s) 859, 1006, 1041, 1591, 1991
SfcI CTRYAG 3 cut(s) 669, 1378, 1461
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 1 cut(s) 630
SlaI CTCGAG 1 cut(s) 401
SmiMI CAYNNNNRTG 2 cut(s) 119, 1148
SmlI CTYRAG 3 cut(s) 380, 401, 456
SmoI CTYRAG 3 cut(s) 380, 401, 456
SphI GCATGC 1 cut(s) 1419
Sse9I AATT 7 cut(s) 680, 789, 986, 1092, 1207, 1795, 1931
SseBI AGGCCT 2 cut(s) 537, 1024
SsiI CCGC 3 cut(s) 436, 1198, 1812
SspI AATATT 1 cut(s) 1516
SspMI CTAG 1 cut(s) 336
StuI AGGCCT 2 cut(s) 537, 1024
StyD4I CCNGG 2 cut(s) 187, 817
StyI CCWWGG 2 cut(s) 618, 1102
TaaI ACNGT 3 cut(s) 969, 1847, 1882
TaiI ACGT 2 cut(s) 1176, 1721
TaqI TCGA 4 cut(s) 14, 402, 431, 1482
TasI AATT 7 cut(s) 680, 789, 986, 1092, 1207, 1795, 1931
TfiI GAWTC 3 cut(s) 1256, 1288, 1484
Tru1I TTAA 5 cut(s) 381, 1239, 1518, 1566, 1824
Tru9I TTAA 5 cut(s) 381, 1239, 1518, 1566, 1824
TscAI CASTG 4 cut(s) 760, 1543, 1806, 1887
TseFI GTSAC 3 cut(s) 180, 748, 1277
TseI GCWGC 5 cut(s) 111, 146, 508, 544, 1460
Tsp45I GTSAC 3 cut(s) 180, 748, 1277
TspGWI ACGGA 2 cut(s) 278, 1597
TspRI CASTG 4 cut(s) 760, 1543, 1806, 1887
Van91I CCANNNNNTGG 1 cut(s) 695
Vha464I CTTAAG 1 cut(s) 380
VneI GTGCAC 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 630
XapI RAATTY 4 cut(s) 680, 986, 1092, 1795
XceI RCATGY 3 cut(s) 482, 883, 1419
XhoI CTCGAG 1 cut(s) 401
XmiI GTMKAC 4 cut(s) 14, 276, 1077, 1108
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.