Rroxscaffold_3G00248900

Chaperone protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
42357248 .. 42362940
5693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248900.1

Sequence Viewer

Length: 2868 bp
ATGGAGCCGCTGTCGATACTGCAACTTATGAGTGAGCTTCGTGAAGATAAGGAGGAGTTAGAGATCACTTATGGTGTGCAAATCCCCGAAAATGCCCTGTCTCTCGCTTGCAGCATTGCCATGAGATACTCTGATGTTTTATTGGCAGCCACCAAAGATGTGAATTATAAGAGTGAGAAGTCATTACCGGGACAGCTGGCAGTTCACCTCTTAGCTAAAACATGTTTTGAACTCATTAATGATTTTGACATGGGTGTAGAGAATTGTTTTGACGTGTACTCACTCATCCGCTCACATATTGAGTTGAATGAATGTAAGAAAGAAAAGGCTCCTACCAGCCAATGCTGGATCGACTATGTAACAGATGAGTATAAAGATCTTAAGGAAAAGTGGCATACACTCGAGGGGAAATGGAAGCTAGTCTTGCAGTCCAGGCGGAGATCAGAAAGAAGAACTCAAGACGTAGAGGCACTGAAGCATGTGCGCGTAAATCTTCTTTCTTATTTGCAGCAACCGGAAGTGGTGAAACCAACAGACCTTATGCAGCTTTTTTCCCTTGTAAATGTGCTTGGCAAAGATCAAAATGAGCTGTTAACTATTTACCCTTTTATGATAGCCAAGGTAGCGTGGTCCTTGACTGGTATTCCAAAATCATGGTTACTTCATTCTACGGAACCACTATTTCTCCCAGATATTGGCCCCACATTTGCAAAGAGGGTTGTGGGGCAAGAGCTTCCTAAACTTGCTGTCACCGGTGCCTTGACAGAGCTTGGGCCTGGGGCGCACCCAATTGCTTCGTTTCTATTTCTTTGCCGTCCTGGTTGTGGCAGGACAGAGCTTGCTAAAGCTATTGCTGAGCTATTTTTTGATGAAAAGGACAGGTTGACTGAACTCAACATGGTAAAATATAAGTGTGCAGATCATGTATCGGATGAAGATGAATATGACTTCCCACGGTATGAACCAAAGTCAGAATTTAGGGAGCATCTCATAGAAGCCGTGAAGAAGAGTCCTTTTGGTGTTGTCTTGCTTGATAACATTGAAGTTGCTCGTCCATCTGATGTAGAAATTTTGGTTGAAATTTTAACCCATGGAAGACTGAGCGATGGGAAAGGACACTTTGTTGATTTCACTAAGTTAGTGATTATTCTGACATCAAATGTTGTGCAAGATCCATTTATGTTGCGCTGTTGCAAATGTACTGAGATGGTTGAAAACTATTTTTTTAAAGACCTGGATGAAGATTCACCAAATGGTGTTTGCCGTCACGTTTTGATTCTACGAAAGGCAAGAAAGCATTTTAGGACTGAGTTATTTGAAACTTTGAATGATGTCATTGCATTCGAGCCCCTTTCACTTCTGCACTACAGATGTGTTACGAGATTGTTGTTGAGGGACATCGCATGCTCCATTACAGAAAAGCGCCTCATCATATGCCCATCTGAAGCTGCAGTTAGAGCTATATTACTTGATTCGGATTTTACGCGTGATGGCACAAAAAGTATAAAGAGCTATCTTCAGACCAATGTAGAAGCTATGCTAAAGGATCACCTTAATGAGATTGATGACCCGTGTGTTGTCTATATGGATGCCTCCGTGGGGACAGAGGAGTTGTCTTATTTTAGATTTGAGAAGATGAGTGCATTAGATTATGATCAGGAATTAAGGGACTTTGTAAACTCTTCAAGTGAATTAAGATCAACATACAGGAAAGAGAAGGTCTGGCTGAAGAAAGTTTCCATGCTGAAACGAAGTTTTCCTGAATTTCTGGCTAATGAAAAGGTGGTGAAGGATCCGGCCAAAGTTTCTAAGGTTCTGCATATAATAGACAGTCTATTAGAAAATGCAACTCATGAAAATGCCACAGTGAATGCATTTGGCTCCTTGGAGAAATCTGTTGAACCTCGGGATGATCAATTGGGGAGATCTAAGAAGATGGCTAAGAATGGTATCAATGGTCTGCGGGCATCTTTTTCCAATCTAATGGTAAAGGACGAATTCATTGGTACAGTAGCTGCAGCCTTTCTCATGTCTATTGATTCTCCACCACAGGGTCTCCCATGTAGACCTGCCAAGACGTTTTTACTGTTGGGTCTTACGGAAGTTGGTAAGGCAGATCTTGTAAAAGGTTTAATGGAGCATTTTGTGAGTGATGATGGGACGAGCCTATTGTTTCAAATTGATATGTCCAAGCATGATGACACAGAGACATGTTTCTCAAGCATGTACACTAGCAATGAGCAAGCGGTGAAGATAGTGCCTTATAGTATTTTCCTTATTGATCGAGTTGAAGATGCCCTTCCCTCTGAGTTCAATGCTCTAATACAACTGCTTGACTGCTGTACTATGAGTGACCAGCATGGACGCAAGGTTATTTTTAGTTGCTGCATTGTCATGGTTGCTTCAAGCGCTGGGAACAAGGACTTCATTGAAAAACTTGTCCACAGGAAATATAGTGCCAGATTTAATGGGAATGTCCTTGGACAGGAACTAAAAACATTTAGGTTCGAATTGCTGAATCGAATGGATGAGATGGTACTATTCAGCTCCTTATTTGGTGATCAACTTGGAAAATTCCTAAGGCTGTCAATGGATGGTGGAGGTGATCTTCATGAGAATCCTGTAAAGGAGGCTCTTGCATTTGAACTTGCTTTTCAGGATTTGTTTCTGCCTGCTAAATCTCTACCTGATCCACCCAGTCCACAGAACCAAGCAGATTCTGTGTTCTATCTCTTAAAATGGCGTGTCGTTAGAGATGGTGGACTTGAAGTTATAGACAAGAGTACCTTTTATCGCCACTTCTTGAATGGTTCTTCAGGGAATATGAATGAGTCTGGTACGGGACCCGTATTTCAATTGTCACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

955

Amino Acids

108.23

Weight (kDa)

5.49

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_2 PF07724 263 - 393 9.3e-22 AAA domain (Cdc48 subfamily)
AAA_2 PF07724 690 - 844 6.5e-14 AAA domain (Cdc48 subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016348)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
Acc36I ACCTGC 1 cut(s) 2077
AccB1I GGYRCC 1 cut(s) 755
AccB7I CCANNNNNTGG 1 cut(s) 695
AccBSI CCGCTC 1 cut(s) 291
AccI GTMKAC 1 cut(s) 2065
AccII CGCG 2 cut(s) 486, 1486
AciI CCGC 5 cut(s) 8, 289, 436, 1963, 2246
AclWI GGATC 6 cut(s) 356, 1166, 1554, 1787, 1800, 2684
AcoI YGGCCR 1 cut(s) 1797
AcsI RAATTY 6 cut(s) 974, 1068, 1080, 1763, 1997, 2573
AcuI CTGAAG 5 cut(s) 494, 1464, 1502, 1748, 2799
AfaI GTAC 8 cut(s) 278, 1201, 2008, 2228, 2344, 2538, 2785, 2839
AfeI AGCGCT 1 cut(s) 2410
AfiI CCNNNNNNNGG 5 cut(s) 695, 824, 1599, 2051, 2485
AflII CTTAAG 1 cut(s) 380
AflIII ACRYGT 4 cut(s) 221, 273, 1484, 2210
AgeI ACCGGT 1 cut(s) 752
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 4 cut(s) 431, 775, 817, 1233
Alw26I GTCTC 3 cut(s) 105, 2060, 2201
AlwI GGATC 6 cut(s) 356, 1166, 1554, 1787, 1800, 2684
AlwNI CAGNNNCTG 2 cut(s) 2015, 2720
Ama87I CYCGRG 2 cut(s) 401, 1905
Aor51HI AGCGCT 1 cut(s) 2410
AoxI GGCC 3 cut(s) 697, 773, 1797
ApeKI GCWGC 8 cut(s) 111, 146, 508, 544, 1448, 2015, 2018, 2385
ApoI RAATTY 6 cut(s) 974, 1068, 1080, 1763, 1997, 2573
AseI ATTAAT 1 cut(s) 237
AsiGI ACCGGT 1 cut(s) 752
AspLEI GCGC 5 cut(s) 486, 784, 1188, 1425, 2411
AspS9I GGNCC 4 cut(s) 630, 698, 773, 2843
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 9 cut(s) 197, 535, 742, 1239, 1541, 1798, 2260, 2570, 2615
AsuII TTCGAA 1 cut(s) 2508
AvaI CYCGRG 2 cut(s) 401, 1905
AvaII GGWCC 2 cut(s) 630, 2843
AxyI CCTNAGG 1 cut(s) 2579
BaeI ACNNNNGTAYC 2 cut(s) 2767, 2800
BamHI GGATCC 1 cut(s) 1792
BanI GGYRCC 1 cut(s) 755
BanII GRGCYC 1 cut(s) 1350
BbsI GAAGAC 1 cut(s) 1102
BbvI GCAGC 8 cut(s) 123, 158, 520, 556, 1435, 2002, 2030, 2372
BceAI ACGGC 3 cut(s) 798, 983, 1248
BciT130I CCWGG 4 cut(s) 433, 777, 819, 1235
BclI TGATCA 3 cut(s) 1654, 1912, 2560
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 3 cut(s) 105, 2060, 2201
BfaI CTAG 2 cut(s) 419, 2232
BfmI CTRYAG 4 cut(s) 1366, 1449, 2016, 2864
BfoI RGCGCY 2 cut(s) 1426, 2412
BfrI CTTAAG 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 2077
BglII AGATCT 3 cut(s) 376, 1925, 2116
BisI GCNGC 9 cut(s) 8, 112, 147, 509, 545, 1449, 2016, 2019, 2386
BlpI GCTNAGC 1 cut(s) 855
BlsI GCNGC 9 cut(s) 9, 113, 148, 510, 546, 1450, 2017, 2020, 2387
Bme1390I CCNGG 5 cut(s) 189, 433, 777, 819, 1235
Bme18I GGWCC 2 cut(s) 630, 2843
BmeT110I CYCGRG 2 cut(s) 401, 1905
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 4 cut(s) 630, 698, 773, 2843
BmiI GGNNCC 9 cut(s) 6, 330, 675, 700, 757, 1794, 1882, 2844, 2845
BmrFI CCNGG 5 cut(s) 189, 433, 777, 819, 1235
BmrI ACTGGG 1 cut(s) 2691
BmsI GCATC 4 cut(s) 994, 1579, 1976, 2284
BmuI ACTGGG 1 cut(s) 2691
BpiI GAAGAC 1 cut(s) 1102
Bpu1102I GCTNAGC 1 cut(s) 855
Bpu14I TTCGAA 1 cut(s) 2508
BpuEI CTTGAG 2 cut(s) 441, 2203
BpuMI CCSGG 1 cut(s) 189
BsaBI GATNNNNATC 1 cut(s) 1653
BsaI GGTCTC 1 cut(s) 2060
BsaJI CCNNGG 8 cut(s) 618, 776, 953, 1090, 1596, 1884, 1904, 2479
BsaWI WCCGGW 2 cut(s) 514, 752
BsaXI ACNNNNNCTCC 5 cut(s) 26, 669, 699, 2040, 2070
Bsc4I CCNNNNNNNGG 5 cut(s) 695, 824, 1599, 2051, 2485
Bse118I RCCGGY 1 cut(s) 752
Bse1I ACTGG 2 cut(s) 643, 2697
Bse21I CCTNAGG 1 cut(s) 2579
Bse3DI GCAATG 3 cut(s) 114, 1335, 2242
Bse8I GATNNNNATC 1 cut(s) 1653
BseBI CCWGG 4 cut(s) 433, 777, 819, 1235
BseDI CCNNGG 8 cut(s) 618, 776, 953, 1090, 1596, 1884, 1904, 2479
BseGI GGATG 7 cut(s) 285, 937, 1243, 1594, 1915, 2533, 2599
BseJI GATNNNNATC 1 cut(s) 1653
BseLI CCNNNNNNNGG 5 cut(s) 695, 824, 1599, 2051, 2485
BseMI GCAATG 3 cut(s) 114, 1335, 2242
BseMII CTCAG 5 cut(s) 846, 1091, 1194, 1299, 2298
BseNI ACTGG 2 cut(s) 643, 2697
BseRI GAGGAG 2 cut(s) 68, 1622
BseXI GCAGC 8 cut(s) 123, 158, 520, 556, 1435, 2002, 2030, 2372
BseYI CCCAGC 1 cut(s) 2411
BsgI GTGCAG 2 cut(s) 936, 1346
Bsh1236I CGCG 2 cut(s) 486, 1486
BshFI GGCC 3 cut(s) 699, 775, 1799
BshNI GGYRCC 1 cut(s) 755
BshTI ACCGGT 1 cut(s) 752
BsiHKCI CYCGRG 2 cut(s) 401, 1905
BsiSI CCGG 4 cut(s) 188, 515, 753, 1796
BslFI GGGAC 6 cut(s) 204, 1409, 1615, 1682, 2173, 2856
BslI CCNNNNNNNGG 5 cut(s) 695, 824, 1599, 2051, 2485
BsmAI GTCTC 3 cut(s) 105, 2060, 2201
BsmFI GGGAC 6 cut(s) 204, 1409, 1615, 1682, 2173, 2856
BsmI GAATGC 2 cut(s) 1340, 1876
BsnI GGCC 3 cut(s) 699, 775, 1799
Bso31I GGTCTC 1 cut(s) 2060
BsoBI CYCGRG 2 cut(s) 401, 1905
Bsp119I TTCGAA 1 cut(s) 2508
Bsp1286I GDGCHC 1 cut(s) 1350
Bsp1407I TGTACA 1 cut(s) 2226
Bsp1720I GCTNAGC 1 cut(s) 855
Bsp19I CCATGG 1 cut(s) 1090
BspACI CCGC 5 cut(s) 8, 289, 436, 1963, 2246
BspANI GGCC 3 cut(s) 699, 775, 1799
BspCNI CTCAG 5 cut(s) 847, 1092, 1195, 1300, 2299
BspFNI CGCG 2 cut(s) 486, 1486
BspHI TCATGA 2 cut(s) 1852, 2611
BspLI GGNNCC 9 cut(s) 6, 330, 675, 700, 757, 1794, 1882, 2844, 2845
BspMAI CTGCAG 2 cut(s) 1453, 2020
BspMI ACCTGC 1 cut(s) 2077
BspPI GGATC 6 cut(s) 356, 1166, 1554, 1787, 1800, 2684
BspT104I TTCGAA 1 cut(s) 2508
BspT107I GGYRCC 1 cut(s) 755
BspTI CTTAAG 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 2060
BsrBI CCGCTC 1 cut(s) 291
BsrDI GCAATG 3 cut(s) 114, 1335, 2242
BsrFI RCCGGY 1 cut(s) 752
BsrGI TGTACA 1 cut(s) 2226
BsrI ACTGG 2 cut(s) 643, 2697
BssAI RCCGGY 1 cut(s) 752
BssECI CCNNGG 8 cut(s) 618, 776, 953, 1090, 1596, 1884, 1904, 2479
BssT1I CCWWGG 4 cut(s) 618, 1090, 1884, 2479
Bst2UI CCWGG 4 cut(s) 433, 777, 819, 1235
Bst4CI ACNGT 5 cut(s) 957, 1832, 1867, 2011, 2088
Bst6I CTCTTC 2 cut(s) 1001, 1687
BstAFI CTTAAG 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 2226
BstBI TTCGAA 1 cut(s) 2508
BstC8I GCNNGC 7 cut(s) 109, 198, 840, 1405, 1965, 2244, 2673
BstDSI CCRYGG 3 cut(s) 953, 1090, 1596
BstENI CCTNNNNNAGG 1 cut(s) 2483
BstF5I GGATG 7 cut(s) 285, 937, 1243, 1594, 1915, 2533, 2599
BstFNI CGCG 2 cut(s) 486, 1486
BstH2I RGCGCY 2 cut(s) 1426, 2412
BstHHI GCGC 5 cut(s) 486, 784, 1188, 1425, 2411
BstMAI GTCTC 3 cut(s) 105, 2060, 2201
BstMWI GCNNNNNNNGC 6 cut(s) 424, 433, 623, 781, 1457, 2408
BstNI CCWGG 4 cut(s) 433, 777, 819, 1235
BstNSI RCATGY 5 cut(s) 225, 482, 1407, 2214, 2227
BstSCI CCNGG 5 cut(s) 187, 431, 775, 817, 1233
BstSFI CTRYAG 4 cut(s) 1366, 1449, 2016, 2864
BstUI CGCG 2 cut(s) 486, 1486
BstV1I GCAGC 8 cut(s) 123, 158, 520, 556, 1435, 2002, 2030, 2372
BstV2I GAAGAC 1 cut(s) 1102
BstX2I RGATCY 5 cut(s) 376, 1171, 1792, 1925, 2116
BstXI CCANNNNNNTGG 2 cut(s) 654, 1984
BstYI RGATCY 5 cut(s) 376, 1171, 1792, 1925, 2116
Bsu36I CCTNAGG 1 cut(s) 2579
BsuRI GGCC 3 cut(s) 699, 775, 1799
BtgI CCRYGG 3 cut(s) 953, 1090, 1596
BtgZI GCGATG 2 cut(s) 1119, 1384
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 7 cut(s) 285, 937, 1243, 1594, 1915, 2533, 2599
BtsIMutI CAGTG 2 cut(s) 470, 1872
BveI ACCTGC 1 cut(s) 2077
Cac8I GCNNGC 7 cut(s) 109, 198, 840, 1405, 1965, 2244, 2673
CaiI CAGNNNCTG 2 cut(s) 2015, 2720
CciI TCATGA 2 cut(s) 1852, 2611
CfoI GCGC 5 cut(s) 486, 784, 1188, 1425, 2411
Cfr10I RCCGGY 1 cut(s) 752
Cfr13I GGNCC 4 cut(s) 630, 698, 773, 2843
CseI GACGC 1 cut(s) 2373
Csp6I GTAC 8 cut(s) 277, 1200, 2007, 2227, 2343, 2537, 2784, 2838
CspAI ACCGGT 1 cut(s) 752
CviQI GTAC 8 cut(s) 277, 1200, 2007, 2227, 2343, 2537, 2784, 2838
DraI TTTAAA 1 cut(s) 1228
EaeI YGGCCR 1 cut(s) 1797
Eam1104I CTCTTC 2 cut(s) 1001, 1687
EarI CTCTTC 2 cut(s) 1001, 1687
EciI GGCGGA 1 cut(s) 451
Eco130I CCWWGG 4 cut(s) 618, 1090, 1884, 2479
Eco24I GRGCYC 1 cut(s) 1350
Eco31I GGTCTC 1 cut(s) 2060
Eco47I GGWCC 2 cut(s) 630, 2843
Eco47III AGCGCT 1 cut(s) 2410
Eco57I CTGAAG 5 cut(s) 494, 1464, 1502, 1748, 2799
Eco81I CCTNAGG 1 cut(s) 2579
Eco88I CYCGRG 2 cut(s) 401, 1905
EcoNI CCTNNNNNAGG 1 cut(s) 2483
EcoO109I RGGNCCY 1 cut(s) 2843
EcoRI GAATTC 1 cut(s) 1997
EcoRII CCWGG 4 cut(s) 431, 775, 817, 1233
EcoT14I CCWWGG 4 cut(s) 618, 1090, 1884, 2479
EcoT22I ATGCAT 1 cut(s) 1876
EcoT38I GRGCYC 1 cut(s) 1350
ErhI CCWWGG 4 cut(s) 618, 1090, 1884, 2479
FalI AAGNNNNNCTT 6 cut(s) 407, 439, 2283, 2315, 2771, 2803
FaqI GGGAC 6 cut(s) 204, 1409, 1615, 1682, 2173, 2856
FauI CCCGC 1 cut(s) 1956
FauNDI CATATG 1 cut(s) 1433
FbaI TGATCA 3 cut(s) 1654, 1912, 2560
FblI GTMKAC 1 cut(s) 2065
Fnu4HI GCNGC 9 cut(s) 8, 112, 147, 509, 545, 1449, 2016, 2019, 2386
FokI GGATG 7 cut(s) 272, 944, 1250, 1601, 1922, 2540, 2606
FriOI GRGCYC 1 cut(s) 1350
Fsp4HI GCNGC 9 cut(s) 8, 112, 147, 509, 545, 1449, 2016, 2019, 2386
FspBI CTAG 2 cut(s) 419, 2232
GlaI GCGC 5 cut(s) 485, 783, 1187, 1424, 2410
GluI GCNGC 9 cut(s) 8, 112, 147, 509, 545, 1449, 2016, 2019, 2386
GsaI CCCAGC 1 cut(s) 2415
HaeII RGCGCY 2 cut(s) 1426, 2412
HaeIII GGCC 3 cut(s) 699, 775, 1799
HapII CCGG 4 cut(s) 188, 515, 753, 1796
HgaI GACGC 1 cut(s) 2373
HhaI GCGC 5 cut(s) 486, 784, 1188, 1425, 2411
Hin6I GCGC 5 cut(s) 484, 782, 1186, 1423, 2409
HinP1I GCGC 5 cut(s) 484, 782, 1186, 1423, 2409
HincII GTYRAC 2 cut(s) 594, 885
HindII GTYRAC 2 cut(s) 594, 885
HinfI GANTC 9 cut(s) 1009, 1244, 1276, 1472, 2039, 2518, 2617, 2717, 2831
HpaI GTTAAC 1 cut(s) 594
HpaII CCGG 4 cut(s) 188, 515, 753, 1796
HphI GGTGA 9 cut(s) 197, 535, 742, 1239, 1541, 1798, 2260, 2570, 2615
Hpy188III TCNNGA 9 cut(s) 41, 458, 1658, 1760, 1853, 1907, 2612, 2657, 2803
HpyAV CCTTC 3 cut(s) 1711, 1783, 2309
HpyCH4III ACNGT 5 cut(s) 957, 1832, 1867, 2011, 2088
HpyCH4IV ACGT 4 cut(s) 273, 462, 1269, 2078
HpyF10VI GCNNNNNNNGC 6 cut(s) 424, 433, 623, 781, 1457, 2408
HpySE526I ACGT 4 cut(s) 273, 462, 1269, 2078
HspAI GCGC 5 cut(s) 484, 782, 1186, 1423, 2409
KflI GGGWCCC 1 cut(s) 2843
Ksp22I TGATCA 3 cut(s) 1654, 1912, 2560
KspAI GTTAAC 1 cut(s) 594
LmnI GCTCC 7 cut(s) 4, 334, 982, 1412, 1886, 2137, 2552
Lsp1109I GCAGC 8 cut(s) 123, 158, 520, 556, 1435, 2002, 2030, 2372
LweI GCATC 4 cut(s) 994, 1579, 1976, 2284
MaeI CTAG 2 cut(s) 419, 2232
MaeII ACGT 4 cut(s) 273, 462, 1269, 2078
MaeIII GTNAC 7 cut(s) 358, 657, 748, 1265, 1375, 2351, 2859
MbiI CCGCTC 1 cut(s) 291
MfeI CAATTG 3 cut(s) 789, 1916, 2855
MflI RGATCY 5 cut(s) 376, 1171, 1792, 1925, 2116
MhlI GDGCHC 1 cut(s) 1350
MluI ACGCGT 1 cut(s) 1484
MlyI GAGTC 2 cut(s) 1018, 2840
Mph1103I ATGCAT 1 cut(s) 1876
MslI CAYNNNNRTG 4 cut(s) 119, 1554, 1857, 2393
MspA1I CMGCKG 2 cut(s) 10, 196
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 4 cut(s) 188, 515, 753, 1796
MspR9I CCNGG 5 cut(s) 189, 433, 777, 819, 1235
MunI CAATTG 3 cut(s) 789, 1916, 2855
Mva1269I GAATGC 2 cut(s) 1340, 1876
MvaI CCWGG 4 cut(s) 433, 777, 819, 1235
MvnI CGCG 2 cut(s) 486, 1486
MwoI GCNNNNNNNGC 6 cut(s) 424, 433, 623, 781, 1457, 2408
NciI CCSGG 1 cut(s) 189
NcoI CCATGG 1 cut(s) 1090
NdeI CATATG 1 cut(s) 1433
NlaIV GGNNCC 9 cut(s) 6, 330, 675, 700, 757, 1794, 1882, 2844, 2845
NmuCI GTSAC 4 cut(s) 748, 1265, 2351, 2859
NsiI ATGCAT 1 cut(s) 1876
NspI RCATGY 5 cut(s) 225, 482, 1407, 2214, 2227
NspV TTCGAA 1 cut(s) 2508
PaeI GCATGC 1 cut(s) 1407
PaeR7I CTCGAG 1 cut(s) 401
PagI TCATGA 2 cut(s) 1852, 2611
PciI ACATGT 2 cut(s) 221, 2210
PctI GAATGC 2 cut(s) 1340, 1876
PfeI GAWTC 7 cut(s) 1244, 1276, 1472, 2039, 2518, 2617, 2717
PflMI CCANNNNNTGG 1 cut(s) 695
PinAI ACCGGT 1 cut(s) 752
PkrI GCNGC 9 cut(s) 9, 113, 148, 510, 546, 1450, 2017, 2020, 2387
PleI GAGTC 2 cut(s) 1017, 2839
PpsI GAGTC 2 cut(s) 1017, 2839
PpuMI RGGWCCY 1 cut(s) 2843
PscI ACATGT 2 cut(s) 221, 2210
PshBI ATTAAT 1 cut(s) 237
PsiI TTATAA 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 2843
Psp6I CCWGG 4 cut(s) 431, 775, 817, 1233
PspFI CCCAGC 1 cut(s) 2411
PspGI CCWGG 4 cut(s) 431, 775, 817, 1233
PspN4I GGNNCC 9 cut(s) 6, 330, 675, 700, 757, 1794, 1882, 2844, 2845
PspPI GGNCC 4 cut(s) 630, 698, 773, 2843
PspPPI RGGWCCY 1 cut(s) 2843
PspXI VCTCGAGB 1 cut(s) 401
PstI CTGCAG 2 cut(s) 1453, 2020
PstNI CAGNNNCTG 2 cut(s) 2015, 2720
PsuI RGATCY 5 cut(s) 376, 1171, 1792, 1925, 2116
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 8 cut(s) 278, 1201, 2008, 2228, 2344, 2538, 2785, 2839
RsaNI GTAC 8 cut(s) 277, 1200, 2007, 2227, 2343, 2537, 2784, 2838
RseI CAYNNNNRTG 4 cut(s) 119, 1554, 1857, 2393
SatI GCNGC 9 cut(s) 8, 112, 147, 509, 545, 1449, 2016, 2019, 2386
Sau96I GGNCC 4 cut(s) 630, 698, 773, 2843
SchI GAGTC 2 cut(s) 1018, 2840
ScrFI CCNGG 5 cut(s) 189, 433, 777, 819, 1235
SduI GDGCHC 1 cut(s) 1350
SfaNI GCATC 4 cut(s) 994, 1579, 1976, 2284
SfcI CTRYAG 4 cut(s) 1366, 1449, 2016, 2864
Sfr274I CTCGAG 1 cut(s) 401
SfuI TTCGAA 1 cut(s) 2508
SgrAI CRCCGGYG 1 cut(s) 752
SinI GGWCC 2 cut(s) 630, 2843
SlaI CTCGAG 1 cut(s) 401
SmiMI CAYNNNNRTG 4 cut(s) 119, 1554, 1857, 2393
SmlI CTYRAG 4 cut(s) 380, 401, 456, 2218
SmoI CTYRAG 4 cut(s) 380, 401, 456, 2218
SphI GCATGC 1 cut(s) 1407
SsiI CCGC 5 cut(s) 8, 289, 436, 1963, 2246
SspMI CTAG 2 cut(s) 419, 2232
StyD4I CCNGG 5 cut(s) 187, 431, 775, 817, 1233
StyI CCWWGG 4 cut(s) 618, 1090, 1884, 2479
TaaI ACNGT 5 cut(s) 957, 1832, 1867, 2011, 2088
TaiI ACGT 4 cut(s) 276, 465, 1272, 2081
TaqI TCGA 7 cut(s) 14, 351, 402, 1344, 2284, 2508, 2521
TatI WGTACW 4 cut(s) 276, 1199, 2226, 2342
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 7 cut(s) 1244, 1276, 1472, 2039, 2518, 2617, 2717
TscAI CASTG 2 cut(s) 477, 1872
TseFI GTSAC 4 cut(s) 748, 1265, 2351, 2859
TseI GCWGC 8 cut(s) 111, 146, 508, 544, 1448, 2015, 2018, 2385
Tsp45I GTSAC 4 cut(s) 748, 1265, 2351, 2859
TspGWI ACGGA 3 cut(s) 686, 1585, 2114
TspRI CASTG 2 cut(s) 477, 1872
Van91I CCANNNNNTGG 1 cut(s) 695
Vha464I CTTAAG 1 cut(s) 380
VpaK11BI GGWCC 2 cut(s) 630, 2843
VspI ATTAAT 1 cut(s) 237
XagI CCTNNNNNAGG 1 cut(s) 2483
XapI RAATTY 6 cut(s) 974, 1068, 1080, 1763, 1997, 2573
XceI RCATGY 5 cut(s) 225, 482, 1407, 2214, 2227
XcmI CCANNNNNNNNNTGG 1 cut(s) 2804
XhoI CTCGAG 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 2065
XspI CTAG 2 cut(s) 419, 2232
Zsp2I ATGCAT 1 cut(s) 1876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.