FvH4_5g23830

MOB kinase activator-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016549
Physical Location & Seq
Reverse (-)
15117033 .. 15122369
5337 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23830.t1

Sequence Viewer

Length: 648 bp
ATGAGTCTCTTCGGTCTGGGCAGGAACCAGAGGACATTCCGGCCAAAAAAGAGCGCCCCTTCTGGGAGTAAGGGGGCTCAGCTGAGAAAGCACATTGATGCAACACTAGGCAGTGGGAACCTAAGAGAAGCAGTAAAACTTCCAACTGGAGAGGATTTAAATGAGTGGCTTGCTGTCAACACTGTGGATTTCTTCAATCAAGTCAATTTGTTGTTTGGTACCCTCACAGAGTTCTGCACCCCAGAGAATTGTCCAACAATGACTGCAGGCCCCAAGTACGAGTATAGATGGGCTGATGGTGTACAAATAAAGAAACCTATTGAGGTATCTGCTCCAAAATATGTTGAGTATTTGATGGACTGGATTGAATCTCAACTTGATGATGAATCCATATTTCCTCAAAAGCTTGGAGCACCATTCCCTCCTAATTTCAGGGAGGTTGTGAAGACAATATTCAAAAGACTGTTCCGTGTATATGCCCACATATACCACTCTCATTTTCAGAAGATTGTGAGCCTTAAGGAGGAGGCCCATCTAAATACCTGCTTCAAGCATTTCATACTATTTACCTGTGAATTTGCGCTAATTGACAAGAAGGAGCTAGCTCCACTTCAAGAGCTTATAGAATCTATCATCGTTCCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 ko04390 ko04391 ko04392 map04111 map04390 map04391 map04392
Pfam Domains
Protein Families
Mob1_phocein

Protein Analysis

216

Amino Acids

24.69

Weight (kDa)

7.68

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mob1_phocein PF03637 34 - 204 3.1e-82 Mob1/phocein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19045
fragaria_vesca FvH4_5g23830 FvH4_5g23830
malus_domestica MD00G1000800.v1.1 MD06G1014300.v1.1
prunus_persica Prupe.5G022100_v2.0.a1 Prupe.5G022100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0213221
rosa_laevigata RLG00000002821
rosa_multiflora Rmu_ssc0000084.1_g000016
rosa_rugosa Rorug07G0140400 Rorug07G0140400
rosa_samantha Rh7DG280100
rosa_wichuraiana Rw7G023610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 551
Acc65I GGTACC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 1 cut(s) 575
AfaI GTAC 3 cut(s) 220, 278, 303
AfiI CCNNNNNNNGG 2 cut(s) 63, 523
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 5 cut(s) 196, 368, 457, 550, 614
AluBI AGCT 5 cut(s) 82, 406, 601, 605, 619
AluI AGCT 5 cut(s) 82, 406, 601, 605, 619
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 1 cut(s) 11
AoxI GGCC 3 cut(s) 41, 268, 528
ApoI RAATTY 1 cut(s) 575
Asp718I GGTACC 1 cut(s) 218
AspLEI GCGC 2 cut(s) 56, 583
AspS9I GGNCC 2 cut(s) 269, 529
AsuNHI GCTAGC 1 cut(s) 601
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 415
BccI CCATC 4 cut(s) 282, 290, 349, 540
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 107, 602
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 57
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 1 cut(s) 551
BlpI GCTNAGC 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 269, 529
BmiI GGNNCC 4 cut(s) 26, 119, 220, 271
BmsI GCATC 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 605
BpiI GAAGAC 1 cut(s) 452
BpmI CTGGAG 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 78
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 523
Bse1I ACTGG 2 cut(s) 151, 365
BseLI CCNNNNNNNGG 2 cut(s) 63, 523
BseMII CTCAG 2 cut(s) 74, 92
BseNI ACTGG 2 cut(s) 151, 365
BseRI GAGGAG 1 cut(s) 539
BsgI GTGCAG 1 cut(s) 220
BshFI GGCC 3 cut(s) 43, 270, 530
BshNI GGYRCC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 63, 523
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 3 cut(s) 43, 270, 530
Bsp1286I GDGCHC 2 cut(s) 79, 415
Bsp1407I TGTACA 1 cut(s) 301
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 3 cut(s) 43, 270, 530
BspCNI CTCAG 2 cut(s) 75, 91
BspLI GGNNCC 4 cut(s) 26, 119, 220, 271
BspMAI CTGCAG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 551
BspOI GCTAGC 1 cut(s) 605
BspT107I GGYRCC 1 cut(s) 218
BspTI CTTAAG 1 cut(s) 518
BsrGI TGTACA 1 cut(s) 301
BsrI ACTGG 2 cut(s) 151, 365
Bst4CI ACNGT 2 cut(s) 184, 465
Bst6I CTCTTC 1 cut(s) 14
BstAFI CTTAAG 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 301
BstC8I GCNNGC 3 cut(s) 171, 268, 603
BstDEI CTNAG 3 cut(s) 78, 83, 122
BstENI CCTNNNNNAGG 1 cut(s) 521
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 2 cut(s) 56, 583
BstMAI GTCTC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 452
BsuRI GGCC 3 cut(s) 43, 270, 530
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 180
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 3 cut(s) 171, 268, 603
CfoI GCGC 2 cut(s) 56, 583
Cfr13I GGNCC 2 cut(s) 269, 529
Csp6I GTAC 3 cut(s) 219, 277, 302
CviQI GTAC 3 cut(s) 219, 277, 302
DdeI CTNAG 3 cut(s) 78, 83, 122
DraI TTTAAA 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 79
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 79
FaiI YATR 9 cut(s) 285, 342, 392, 475, 477, 485, 487, 560, 623
FriOI GRGCYC 1 cut(s) 79
FspBI CTAG 2 cut(s) 107, 602
GlaI GCGC 2 cut(s) 55, 582
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 3 cut(s) 43, 270, 530
HapII CCGG 1 cut(s) 40
HhaI GCGC 2 cut(s) 56, 583
Hin6I GCGC 2 cut(s) 54, 581
HinP1I GCGC 2 cut(s) 54, 581
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 4 cut(s) 4, 368, 386, 626
HpaII CCGG 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 178, 302
Hpy188I TCNGA 1 cut(s) 504
Hpy188III TCNNGA 1 cut(s) 614
Hpy8I GTNNAC 2 cut(s) 178, 302
HpyAV CCTTC 2 cut(s) 69, 589
HpyCH4III ACNGT 2 cut(s) 184, 465
HpyCH4V TGCA 3 cut(s) 101, 237, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 78, 83, 122
HspAI GCGC 2 cut(s) 54, 581
KpnI GGTACC 1 cut(s) 222
LmnI GCTCC 4 cut(s) 337, 410, 598, 610
LweI GCATC 1 cut(s) 88
MaeI CTAG 2 cut(s) 107, 602
MboII GAAGA 3 cut(s) 184, 457, 517
MhlI GDGCHC 2 cut(s) 79, 415
MluCI AATT 5 cut(s) 205, 247, 427, 575, 585
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 167, 278
MnlI CCTC 9 cut(s) 24, 145, 233, 316, 408, 430, 432, 517, 520
MseI TTAA 2 cut(s) 158, 519
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 82
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 88
NheI GCTAGC 1 cut(s) 601
NlaIV GGNNCC 4 cut(s) 26, 119, 220, 271
PfeI GAWTC 3 cut(s) 368, 386, 626
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspN4I GGNNCC 4 cut(s) 26, 119, 220, 271
PspPI GGNCC 2 cut(s) 269, 529
PstI CTGCAG 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 3 cut(s) 220, 278, 303
RsaNI GTAC 3 cut(s) 219, 277, 302
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 2 cut(s) 158, 519
Sau96I GGNCC 2 cut(s) 269, 529
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 2 cut(s) 79, 415
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 264
SmiI ATTTAAAT 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 5 cut(s) 205, 247, 427, 575, 585
SspI AATATT 1 cut(s) 453
SspMI CTAG 2 cut(s) 107, 602
SwaI ATTTAAAT 1 cut(s) 159
TaaI ACNGT 2 cut(s) 184, 465
TasI AATT 5 cut(s) 205, 247, 427, 575, 585
TatI WGTACW 1 cut(s) 301
TfiI GAWTC 3 cut(s) 368, 386, 626
Tru1I TTAA 2 cut(s) 158, 519
Tru9I TTAA 2 cut(s) 158, 519
TscAI CASTG 2 cut(s) 118, 187
TspDTI ATGAA 2 cut(s) 399, 547
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 2 cut(s) 118, 187
Vha464I CTTAAG 1 cut(s) 518
XagI CCTNNNNNAGG 1 cut(s) 521
XapI RAATTY 1 cut(s) 575
XspI CTAG 2 cut(s) 107, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.