Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0021085

Physical Location & Seq

Genomic Coordinates Forward (+)

17789108 .. 17789865

Gene Structure 758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGATGTCTAAGTCTAGAGCTGAGGAGATGATCAACGCTGCTAATACTGCAAACCTCGCAGCAATGTCTCTCAATCATGAAGAAGGTATGTCTCAAGATGTGGAAGCTCGGACGCGGGCGGCAGCACTTGTAGCTGCCATGAACTTAAAGCGTTCCCTGGAAAAGATCCATGCTGATGCAATGCCTGAACACTACGAAGCAGAGTTGGAGATAAATGACTTGCCCCAGAATGGTAGATGGAAAGTCACCCACAAGGAAACGGTAGGACCTATAACAGACTGGACTGGAGTTGCCGTTACTACCAGGGGTCAGTATTTCCCACCAGGGAAGGTTCCAGGACCAGCAGATCGCAAGCTCTACTTGTTTATTGAGGGTCATACCGAAAAGTCTGTCGAGAGAGCTAAAGCAGAACTAGAACATGTTTTGGAAGAGATCTCAAATCCTGGAGGAAATCAGTTATGCAGATATCAAGTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

160

Amino Acids

17.67

Weight (kDa)

5.69

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_12	PF23469	66 - 143	1.1e-15	KH-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021085)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26290
malus_domestica	MD17G1075300.v1.1 MD17G1104600.v1.1
pyrus_communis	pycom09g01170
rosa_multiflora	Rmu_sc0042919.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	115
AciI	CCGC	2 cut(s)	115, 119
AclWI	GGATC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	418
AjnI	CCWGG	5 cut(s)	156, 302, 322, 334, 442
AluBI	AGCT	5 cut(s)	20, 107, 134, 355, 401
AluI	AGCT	5 cut(s)	20, 107, 134, 355, 401
Alw26I	GTCTC	2 cut(s)	72, 96
AlwI	GGATC	1 cut(s)	160
ApeKI	GCWGC	4 cut(s)	38, 59, 122, 134
ArsI	GACNNNNNNTTYG	2 cut(s)	375, 407
AspS9I	GGNCC	2 cut(s)	266, 338
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	266, 338
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	4 cut(s)	25, 71, 121, 134
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	5 cut(s)	158, 304, 324, 336, 444
BclI	TGATCA	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	72, 96
BfaI	CTAG	2 cut(s)	15, 413
BglII	AGATCT	1 cut(s)	432
BisI	GCNGC	5 cut(s)	39, 60, 120, 123, 135
BlsI	GCNGC	5 cut(s)	40, 61, 121, 124, 136
Bme1390I	CCNGG	5 cut(s)	158, 304, 324, 336, 444
Bme18I	GGWCC	2 cut(s)	266, 338
BmgT120I	GGNCC	2 cut(s)	266, 338
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	5 cut(s)	158, 304, 324, 336, 444
BmsI	GCATC	1 cut(s)	166
BpmI	CTGGAG	2 cut(s)	306, 465
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	156, 303, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	284, 289
Bse3DI	GCAATG	2 cut(s)	69, 186
BseBI	CCWGG	5 cut(s)	158, 304, 324, 336, 444
BseDI	CCNNGG	3 cut(s)	156, 303, 323
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	2 cut(s)	69, 186
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	284, 289
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	4 cut(s)	25, 71, 121, 134
Bsh1236I	CGCG	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	2 cut(s)	72, 96
Bsp143I	GATC	4 cut(s)	30, 165, 346, 432
BspACI	CCGC	2 cut(s)	115, 119
BspCNI	CTCAG	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	160
BsrDI	GCAATG	2 cut(s)	69, 186
BsrI	ACTGG	2 cut(s)	284, 289
BssECI	CCNNGG	3 cut(s)	156, 303, 323
BssMI	GATC	4 cut(s)	30, 165, 346, 432
Bst2UI	CCWGG	5 cut(s)	158, 304, 324, 336, 444
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	117, 353
BstDEI	CTNAG	2 cut(s)	9, 21
BstFNI	CGCG	1 cut(s)	115
BstKTI	GATC	4 cut(s)	33, 168, 349, 435
BstMAI	GTCTC	2 cut(s)	72, 96
BstMBI	GATC	4 cut(s)	30, 165, 346, 432
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 56, 131
BstNI	CCWGG	5 cut(s)	158, 304, 324, 336, 444
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	5 cut(s)	156, 302, 322, 334, 442
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	4 cut(s)	25, 71, 121, 134
BstX2I	RGATCY	2 cut(s)	165, 432
BstYI	RGATCY	2 cut(s)	165, 432
Cac8I	GCNNGC	2 cut(s)	117, 353
CciI	TCATGA	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	266, 338
CseI	GACGC	1 cut(s)	121
CviAII	CATG	4 cut(s)	77, 139, 170, 419
CviJI	RGCY	5 cut(s)	20, 107, 134, 355, 401
CviKI_1	RGCY	5 cut(s)	20, 107, 134, 355, 401
DdeI	CTNAG	2 cut(s)	9, 21
DpnI	GATC	4 cut(s)	32, 167, 348, 434
DpnII	GATC	4 cut(s)	30, 165, 346, 432
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco32I	GATATC	1 cut(s)	467
Eco47I	GGWCC	2 cut(s)	266, 338
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	5 cut(s)	156, 302, 322, 334, 442
EcoRV	GATATC	1 cut(s)	467
FaeI	CATG	4 cut(s)	80, 142, 173, 422
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	4 cut(s)	76, 138, 169, 418
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	5 cut(s)	39, 60, 120, 123, 135
Fsp4HI	GCNGC	5 cut(s)	39, 60, 120, 123, 135
FspBI	CTAG	2 cut(s)	15, 413
GluI	GCNGC	5 cut(s)	39, 60, 120, 123, 135
GsuI	CTGGAG	2 cut(s)	306, 465
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	4 cut(s)	80, 142, 173, 422
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	4 cut(s)	15, 77, 95, 394
HpyAV	CCTTC	2 cut(s)	77, 322
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	3 cut(s)	50, 179, 462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 56, 131
HpyF3I	CTNAG	2 cut(s)	9, 21
Hsp92II	CATG	4 cut(s)	80, 142, 173, 422
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	4 cut(s)	30, 165, 346, 432
Lsp1109I	GCAGC	4 cut(s)	25, 71, 121, 134
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	2 cut(s)	15, 413
MaeIII	GTNAC	2 cut(s)	244, 295
MalI	GATC	4 cut(s)	32, 167, 348, 434
MboI	GATC	4 cut(s)	30, 165, 346, 432
MboII	GAAGA	2 cut(s)	92, 440
MflI	RGATCY	2 cut(s)	165, 432
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	4 cut(s)	16, 65, 364, 440
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	174
MspR9I	CCNGG	5 cut(s)	158, 304, 324, 336, 444
MvaI	CCWGG	5 cut(s)	158, 304, 324, 336, 444
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	47, 56, 131
NdeII	GATC	4 cut(s)	30, 165, 346, 432
NlaIII	CATG	4 cut(s)	80, 142, 173, 422
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	1 cut(s)	422
PagI	TCATGA	1 cut(s)	76
PciI	ACATGT	1 cut(s)	418
PfoI	TCCNGGA	2 cut(s)	334, 442
PkrI	GCNGC	5 cut(s)	40, 61, 121, 124, 136
PpuMI	RGGWCCY	1 cut(s)	266
PscI	ACATGT	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	5 cut(s)	156, 302, 322, 334, 442
PspGI	CCWGG	5 cut(s)	156, 302, 322, 334, 442
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	2 cut(s)	266, 338
PspPPI	RGGWCCY	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	165, 432
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	5 cut(s)	39, 60, 120, 123, 135
Sau3AI	GATC	4 cut(s)	30, 165, 346, 432
Sau96I	GGNCC	2 cut(s)	266, 338
ScrFI	CCNGG	5 cut(s)	158, 304, 324, 336, 444
SetI	ASST	9 cut(s)	22, 57, 88, 109, 136, 271, 333, 357, 403
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	2 cut(s)	266, 338
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SsiI	CCGC	2 cut(s)	115, 119
SspMI	CTAG	2 cut(s)	15, 413
StyD4I	CCNGG	5 cut(s)	156, 302, 322, 334, 442
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	393
TauI	GCSGC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	4 cut(s)	38, 59, 122, 134
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	93, 155
VpaK11BI	GGWCC	2 cut(s)	266, 338
XbaI	TCTAGA	1 cut(s)	14
XceI	RCATGY	1 cut(s)	422
XspI	CTAG	2 cut(s)	15, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.