Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0021085

Physical Location & Seq

Genomic Coordinates Reverse (-)

8894928 .. 8896396

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1104600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAATTTGAAGCATAACCTGGCAAAAATTCAAGCTGATGCAATGCCCGAGCACTTTGAAGCAGAGTTGGAAATAAATGATATTCCCCAGAATGCCCGATGGAAGGTTACCCACAAGGAAACTTTGGGCCCTATATCAGACTTGACTGGAGCTGCCATTACTATCAGGGGTCAATATTTCCCGCCAGGCAAGGTTCCAGGGCCAGGAGATCCCAAGGTGTTCCTGTTTATTGAGGGTCCTACCGAACAATCTGTCAAGAGAGGTAAAGCAGAACTAAAACACAAGTTGGAAGAAATCATGAATCAGGCATTATCACTTCCTGGAGGCGCTCAGCCACGCAGATATCAATTATATAAGAGAGAACGTGATTCCTACCTACCTTTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

130

Amino Acids

14.53

Weight (kDa)

8.86

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_12	PF23469	20 - 103	1.2e-13	KH-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0021085)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26290
malus_domestica	MD17G1075300.v1.1 MD17G1104600.v1.1
pyrus_communis	pycom09g01170
rosa_multiflora	Rmu_sc0042919.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	2 cut(s)	4, 27
AfiI	CCNNNNNNNGG	2 cut(s)	103, 203
AgsI	TTSAA	3 cut(s)	10, 32, 59
AjnI	CCWGG	5 cut(s)	18, 184, 196, 202, 319
AluBI	AGCT	2 cut(s)	35, 152
AluI	AGCT	2 cut(s)	35, 152
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	2 cut(s)	127, 200
ApaI	GGGCCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	2 cut(s)	4, 27
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	4 cut(s)	127, 128, 200, 236
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	93
BciT130I	CCWGG	5 cut(s)	20, 186, 198, 204, 321
BfoI	RGCGCY	1 cut(s)	330
BisI	GCNGC	1 cut(s)	153
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	5 cut(s)	20, 186, 198, 204, 321
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	4 cut(s)	127, 128, 200, 236
BmiI	GGNNCC	3 cut(s)	129, 195, 237
BmrFI	CCNGG	5 cut(s)	20, 186, 198, 204, 321
BmsI	GCATC	1 cut(s)	28
BpmI	CTGGAG	2 cut(s)	168, 342
Bpu1102I	GCTNAGC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	197, 213
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 203
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	5 cut(s)	20, 186, 198, 204, 321
BseDI	CCNNGG	2 cut(s)	197, 213
BseLI	CCNNNNNNNGG	2 cut(s)	103, 203
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	151
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	139
BshFI	GGCC	2 cut(s)	129, 202
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	103, 203
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	129, 202
BsoBI	CYCGRG	1 cut(s)	47
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	54, 131
Bsp143I	GATC	1 cut(s)	208
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	2 cut(s)	129, 202
BspCNI	CTCAG	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	129, 195, 237
BspPI	GGATC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	197, 213
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	5 cut(s)	20, 186, 198, 204, 321
BstDEI	CTNAG	1 cut(s)	330
BstEII	GGTNACC	1 cut(s)	106
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstNI	CCWGG	5 cut(s)	20, 186, 198, 204, 321
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	5 cut(s)	18, 184, 196, 202, 319
BstSLI	GKGCMC	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	129, 202
CciI	TCATGA	1 cut(s)	297
CfoI	GCGC	1 cut(s)	329
Cfr13I	GGNCC	4 cut(s)	127, 128, 200, 236
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	5 cut(s)	35, 129, 152, 202, 334
CviKI_1	RGCY	5 cut(s)	35, 129, 152, 202, 334
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	106
EcoO109I	RGGNCCY	2 cut(s)	128, 236
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	5 cut(s)	18, 184, 196, 202, 319
EcoRV	GATATC	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	301
FaiI	YATR	6 cut(s)	15, 134, 299, 352, 354, 388
FatI	CATG	1 cut(s)	297
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	153
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	1 cut(s)	153
GsuI	CTGGAG	2 cut(s)	168, 342
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	2 cut(s)	129, 202
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	2 cut(s)	301, 368
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	2 cut(s)	256, 298
HpyAV	CCTTC	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	41, 386
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	302
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	54, 131
MluCI	AATT	3 cut(s)	4, 27, 347
MmeI	TCCRAC	2 cut(s)	48, 267
MnlI	CCTC	3 cut(s)	226, 254, 317
MspR9I	CCNGG	5 cut(s)	20, 186, 198, 204, 321
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	5 cut(s)	20, 186, 198, 204, 321
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	3 cut(s)	129, 195, 237
PagI	TCATGA	1 cut(s)	297
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	301, 368
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	5 cut(s)	18, 184, 196, 202, 319
PspEI	GGTNACC	1 cut(s)	106
PspGI	CCWGG	5 cut(s)	18, 184, 196, 202, 319
PspN4I	GGNNCC	3 cut(s)	129, 195, 237
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	4 cut(s)	127, 128, 200, 236
PspPPI	RGGWCCY	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	208
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	4 cut(s)	127, 128, 200, 236
ScrFI	CCNGG	5 cut(s)	20, 186, 198, 204, 321
SduI	GDGCHC	2 cut(s)	54, 131
SfaNI	GCATC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	236
Sse9I	AATT	3 cut(s)	4, 27, 347
SsiI	CCGC	1 cut(s)	182
SspI	AATATT	1 cut(s)	176
StyD4I	CCNGG	5 cut(s)	18, 184, 196, 202, 319
StyI	CCWWGG	1 cut(s)	213
TaiI	ACGT	1 cut(s)	367
TasI	AATT	3 cut(s)	4, 27, 347
TfiI	GAWTC	2 cut(s)	301, 368
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	17, 314
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	4, 27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.