Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0021085

Physical Location & Seq

Genomic Coordinates Forward (+)

6265145 .. 6266557

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1075300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATGAGTCCACTCAAAGATAGTTATGAACCATTCCGAAAAAATTTATACATTGATGAGGTGAAGGAGATCTCAAAAATGACCCCAGGAGATGTGGGTGCATACCGAAAACAGTTGGAATTGAAGATACATGGTAAGGATGTCACCAAGCCCATTAAGACCTGGCACCAAACTGGGCTTACAAATAAAATCTTCGAAATTATAAAGAGGCTCGGCTATGAAAAGCCAATGCCAATTCAGGCTCAGGCATTGCCTATAATTATGAGCGGTCGAGACTGCATTGGCATTGCAAAAACTGGCTCAGGCAAAACCCTTGTATATGTGCTGCCAATGCTGAGGCATAGCAAGGACCATCCACCTGTGATTCACAGTGTTATTAACAAGTTTGCCAGGGCACTTAGTCTCAGGTGTGTGCCTGTATATGGAGGTTCTGGTATTGCCCTGCAGACCGGGGAGTGGAAGGTTACCCACAAGGAAACTTTGGGCCCTATATCAGAGTTGACTGGAGCTGCCATTACTATCAGGGGTCAATATTTCCCGCCAGGCAAGGTTCCAGGGCCAGGAGATTGCAAGGTGTTCCTGTTTATTGACGGTCTTACTGAACAATCTGTCAAGAGAGGTAAAGCAGAAATAAAACGCAAGTCGGAAGAAATCATGAATCAGGCATTACCACTCCCGGGCGGTGCTCAGCAACGCAGATATCAAGCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

238

Amino Acids

26.3

Weight (kDa)

9.74

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	78 - 118	8e-12	DEAD/DEAH box helicase
KH_12	PF23469	154 - 207	6.9e-06	KH-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021085)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26290
malus_domestica	MD17G1075300.v1.1 MD17G1104600.v1.1
pyrus_communis	pycom09g01170
rosa_multiflora	Rmu_sc0042919.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	165
AccBSI	CCGCTC	1 cut(s)	267
AciI	CCGC	3 cut(s)	267, 539, 681
AcsI	RAATTY	1 cut(s)	43
AfiI	CCNNNNNNNGG	4 cut(s)	422, 456, 560, 677
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	6 cut(s)	85, 161, 389, 541, 553, 559
AluBI	AGCT	2 cut(s)	509, 707
AluI	AGCT	2 cut(s)	509, 707
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	2 cut(s)	267, 407
Ama87I	CYCGRG	1 cut(s)	676
AoxI	GGCC	2 cut(s)	484, 557
ApaI	GGGCCC	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	325, 509
ApoI	RAATTY	1 cut(s)	43
AspS9I	GGNCC	4 cut(s)	349, 484, 485, 557
AsuC2I	CCSGG	3 cut(s)	451, 677, 678
AsuHPI	GGTGA	2 cut(s)	73, 136
AsuII	TTCGAA	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	676
AvaII	GGWCC	1 cut(s)	349
BaeGI	GKGCMC	2 cut(s)	397, 488
BanI	GGYRCC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	688
BbvCI	CCTCAGC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	312, 496
BccI	CCATC	1 cut(s)	360
BciT130I	CCWGG	6 cut(s)	87, 163, 391, 543, 555, 561
BcnI	CCSGG	3 cut(s)	451, 677, 678
BcoDI	GTCTC	2 cut(s)	267, 407
BfmI	CTRYAG	1 cut(s)	443
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	2 cut(s)	326, 510
BlpI	GCTNAGC	1 cut(s)	687
BlsI	GCNGC	2 cut(s)	327, 511
Bme1390I	CCNGG	9 cut(s)	87, 163, 391, 451, 543, 555, 561, 677, 678
Bme18I	GGWCC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	676
BmgT120I	GGNCC	4 cut(s)	349, 484, 485, 557
BmiI	GGNNCC	3 cut(s)	167, 486, 552
BmrFI	CCNGG	9 cut(s)	87, 163, 391, 451, 543, 555, 561, 677, 678
BmrI	ACTGGG	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	3 cut(s)	243, 301, 335
Bpu1102I	GCTNAGC	1 cut(s)	687
Bpu14I	TTCGAA	1 cut(s)	195
BpuMI	CCSGG	3 cut(s)	451, 677, 678
BsaJI	CCNNGG	5 cut(s)	85, 390, 450, 554, 676
Bsc4I	CCNNNNNNNGG	4 cut(s)	422, 456, 560, 677
Bse1I	ACTGG	3 cut(s)	178, 301, 508
Bse3DI	GCAATG	2 cut(s)	248, 285
BseBI	CCWGG	6 cut(s)	87, 163, 391, 543, 555, 561
BseDI	CCNNGG	5 cut(s)	85, 390, 450, 554, 676
BseGI	GGATG	2 cut(s)	145, 352
BseLI	CCNNNNNNNGG	4 cut(s)	422, 456, 560, 677
BseMI	GCAATG	2 cut(s)	248, 285
BseMII	CTCAG	5 cut(s)	257, 315, 326, 418, 701
BseNI	ACTGG	3 cut(s)	178, 301, 508
BseSI	GKGCMC	2 cut(s)	397, 488
BseXI	GCAGC	2 cut(s)	312, 496
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	486, 559
BshNI	GGYRCC	1 cut(s)	165
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	688
BsiHKCI	CYCGRG	1 cut(s)	676
BsiSI	CCGG	2 cut(s)	450, 677
BslI	CCNNNNNNNGG	4 cut(s)	422, 456, 560, 677
BsmAI	GTCTC	2 cut(s)	267, 407
BsnI	GGCC	2 cut(s)	486, 559
BsoBI	CYCGRG	1 cut(s)	676
Bsp119I	TTCGAA	1 cut(s)	195
Bsp120I	GGGCCC	1 cut(s)	484
Bsp1286I	GDGCHC	3 cut(s)	397, 488, 688
Bsp143I	GATC	1 cut(s)	69
Bsp1720I	GCTNAGC	1 cut(s)	687
BspACI	CCGC	3 cut(s)	267, 539, 681
BspANI	GGCC	2 cut(s)	486, 559
BspCNI	CTCAG	5 cut(s)	256, 314, 327, 417, 700
BspHI	TCATGA	1 cut(s)	654
BspLI	GGNNCC	3 cut(s)	167, 486, 552
BspMAI	CTGCAG	1 cut(s)	447
BspT104I	TTCGAA	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	165
BsrBI	CCGCTC	1 cut(s)	267
BsrDI	GCAATG	2 cut(s)	248, 285
BsrI	ACTGG	3 cut(s)	178, 301, 508
BssECI	CCNNGG	5 cut(s)	85, 390, 450, 554, 676
BssMI	GATC	1 cut(s)	69
Bst2UI	CCWGG	6 cut(s)	87, 163, 391, 543, 555, 561
Bst4CI	ACNGT	3 cut(s)	114, 371, 593
BstBI	TTCGAA	1 cut(s)	195
BstDEI	CTNAG	6 cut(s)	243, 301, 335, 398, 404, 687
BstEII	GGTNACC	1 cut(s)	463
BstF5I	GGATG	2 cut(s)	145, 352
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	2 cut(s)	267, 407
BstMBI	GATC	1 cut(s)	69
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNI	CCWGG	6 cut(s)	87, 163, 391, 543, 555, 561
BstPI	GGTNACC	1 cut(s)	463
BstSCI	CCNGG	9 cut(s)	85, 161, 389, 449, 541, 553, 559, 675, 676
BstSFI	CTRYAG	1 cut(s)	443
BstSLI	GKGCMC	2 cut(s)	397, 488
BstV1I	GCAGC	2 cut(s)	312, 496
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	486, 559
BtsCI	GGATG	2 cut(s)	145, 352
BtsIMutI	CAGTG	1 cut(s)	376
CciI	TCATGA	1 cut(s)	654
Cfr13I	GGNCC	4 cut(s)	349, 484, 485, 557
Cfr9I	CCCGGG	1 cut(s)	676
CviAII	CATG	2 cut(s)	131, 655
DdeI	CTNAG	6 cut(s)	243, 301, 335, 398, 404, 687
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	488
Eco32I	GATATC	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	676
Eco91I	GGTNACC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	485
EcoO65I	GGTNACC	1 cut(s)	463
EcoRII	CCWGG	6 cut(s)	85, 161, 389, 541, 553, 559
EcoRV	GATATC	1 cut(s)	701
EcoT38I	GRGCYC	1 cut(s)	488
FaeI	CATG	2 cut(s)	134, 658
FatI	CATG	2 cut(s)	130, 654
FauI	CCCGC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	326, 510
FokI	GGATG	2 cut(s)	152, 339
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	2 cut(s)	326, 510
GluI	GCNGC	2 cut(s)	326, 510
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	486, 559
HapII	CCGG	2 cut(s)	450, 677
Hin1II	CATG	2 cut(s)	134, 658
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HinfI	GANTC	3 cut(s)	7, 364, 658
HpaII	CCGG	2 cut(s)	450, 677
HphI	GGTGA	2 cut(s)	73, 136
Hpy166II	GTNNAC	2 cut(s)	11, 501
Hpy188I	TCNGA	3 cut(s)	38, 496, 646
Hpy188III	TCNNGA	3 cut(s)	272, 613, 655
Hpy8I	GTNNAC	2 cut(s)	11, 501
HpyAV	CCTTC	2 cut(s)	58, 454
HpyCH4III	ACNGT	3 cut(s)	114, 371, 593
HpyCH4V	TGCA	5 cut(s)	101, 279, 290, 445, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	6 cut(s)	243, 301, 335, 398, 404, 687
Hsp92II	CATG	2 cut(s)	134, 658
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	2 cut(s)	312, 496
MaeIII	GTNAC	2 cut(s)	142, 463
MalI	GATC	1 cut(s)	71
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	1 cut(s)	69
MboII	GAAGA	3 cut(s)	136, 184, 659
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	3 cut(s)	397, 488, 688
MluCI	AATT	5 cut(s)	43, 119, 198, 234, 258
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	96, 624
MnlI	CCTC	5 cut(s)	52, 201, 330, 419, 611
MseI	TTAA	2 cut(s)	156, 378
MspI	CCGG	2 cut(s)	450, 677
MspR9I	CCNGG	9 cut(s)	87, 163, 391, 451, 543, 555, 561, 677, 678
MvaI	CCWGG	6 cut(s)	87, 163, 391, 543, 555, 561
MwoI	GCNNNNNNNGC	1 cut(s)	331
NciI	CCSGG	3 cut(s)	451, 677, 678
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	134, 658
NlaIV	GGNNCC	3 cut(s)	167, 486, 552
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	142
NspV	TTCGAA	1 cut(s)	195
PagI	TCATGA	1 cut(s)	654
PfeI	GAWTC	2 cut(s)	364, 658
PkrI	GCNGC	2 cut(s)	327, 511
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	203
Psp6I	CCWGG	6 cut(s)	85, 161, 389, 541, 553, 559
PspEI	GGTNACC	1 cut(s)	463
PspGI	CCWGG	6 cut(s)	85, 161, 389, 541, 553, 559
PspN4I	GGNNCC	3 cut(s)	167, 486, 552
PspOMI	GGGCCC	1 cut(s)	484
PspPI	GGNCC	4 cut(s)	349, 484, 485, 557
PstI	CTGCAG	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	156, 378
SatI	GCNGC	2 cut(s)	326, 510
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	4 cut(s)	349, 484, 485, 557
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	9 cut(s)	87, 163, 391, 451, 543, 555, 561, 677, 678
SduI	GDGCHC	3 cut(s)	397, 488, 688
SfcI	CTRYAG	1 cut(s)	443
SfuI	TTCGAA	1 cut(s)	195
SinI	GGWCC	1 cut(s)	349
SmaI	CCCGGG	1 cut(s)	678
Sse9I	AATT	5 cut(s)	43, 119, 198, 234, 258
SsiI	CCGC	3 cut(s)	267, 539, 681
SspI	AATATT	1 cut(s)	533
StyD4I	CCNGG	9 cut(s)	85, 161, 389, 449, 541, 553, 559, 675, 676
TaaI	ACNGT	3 cut(s)	114, 371, 593
TaqI	TCGA	2 cut(s)	195, 271
TasI	AATT	5 cut(s)	43, 119, 198, 234, 258
TfiI	GAWTC	2 cut(s)	364, 658
Tru1I	TTAA	2 cut(s)	156, 378
Tru9I	TTAA	2 cut(s)	156, 378
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	325, 509
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	42, 234, 671
TspMI	CCCGGG	1 cut(s)	676
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	1 cut(s)	43
XmaI	CCCGGG	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.