Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042919.1

Orthogroup ID

OG0021085

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 438

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042919.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

acagcagcagttgtgcctgggactggtctgcctcttgttggcagtgatggggcagctcgggctgcagcacttgcggctgccatgaacttacagcataacctggcaaagatccacgctgatgcaatgcctgaacactatgaagcagagttggagataaatgattttccccagaatgctagatggaaagtcacccacaaggaaacgttgggccctatatcagagtggactggagctgcgattactaccaggggtcagtatttcccaccagggaaggttccaggacaaggagatcgcaagctctacttgtttattgagggccctaccgaacagtctgtcaagagagctaaagcagaattaaaaggtgttttggaagagatctcaaatcaggcattatcactccctggaggaaatcagcaaggcagatatcaagttatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

145

Amino Acids

15.53

Weight (kDa)

6.39

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021085)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26290
malus_domestica	MD17G1075300.v1.1 MD17G1104600.v1.1
pyrus_communis	pycom09g01170
rosa_multiflora	Rmu_sc0042919.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	1 cut(s)	103
AfiI	CCNNNNNNNGG	3 cut(s)	23, 38, 284
AjnI	CCWGG	6 cut(s)	16, 99, 245, 265, 277, 400
AluBI	AGCT	4 cut(s)	56, 233, 298, 344
AluI	AGCT	4 cut(s)	56, 233, 298, 344
AlwI	GGATC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	2 cut(s)	208, 316
ApaI	GGGCCC	2 cut(s)	212, 320
ApeKI	GCWGC	6 cut(s)	5, 53, 62, 65, 77, 233
ArsI	GACNNNNNNTTYG	2 cut(s)	318, 350
AspS9I	GGNCC	4 cut(s)	208, 209, 316, 317
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	57
BaeGI	GKGCMC	2 cut(s)	212, 320
BanII	GRGCYC	2 cut(s)	212, 320
BbvI	GCAGC	6 cut(s)	17, 49, 64, 65, 77, 220
BccI	CCATC	2 cut(s)	41, 174
BciT130I	CCWGG	6 cut(s)	18, 101, 247, 267, 279, 402
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	63
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	7 cut(s)	6, 54, 63, 66, 75, 78, 234
BlsI	GCNGC	7 cut(s)	7, 55, 64, 67, 76, 79, 235
Bme1390I	CCNGG	6 cut(s)	18, 101, 247, 267, 279, 402
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	4 cut(s)	208, 209, 316, 317
BmiI	GGNNCC	3 cut(s)	210, 276, 318
BmrFI	CCNGG	6 cut(s)	18, 101, 247, 267, 279, 402
BmsI	GCATC	1 cut(s)	109
BpmI	CTGGAG	2 cut(s)	249, 423
BsaJI	CCNNGG	4 cut(s)	17, 246, 266, 400
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 38, 284
Bse1I	ACTGG	2 cut(s)	28, 232
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	6 cut(s)	18, 101, 247, 267, 279, 402
BseDI	CCNNGG	4 cut(s)	17, 246, 266, 400
BseLI	CCNNNNNNNGG	3 cut(s)	23, 38, 284
BseMI	GCAATG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	28, 232
BseSI	GKGCMC	2 cut(s)	212, 320
BseXI	GCAGC	6 cut(s)	17, 49, 64, 65, 77, 220
BshFI	GGCC	2 cut(s)	210, 318
BsiHKCI	CYCGRG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	3 cut(s)	23, 38, 284
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	210, 318
BsoBI	CYCGRG	1 cut(s)	57
Bsp120I	GGGCCC	2 cut(s)	208, 316
Bsp1286I	GDGCHC	2 cut(s)	212, 320
Bsp143I	GATC	3 cut(s)	108, 289, 375
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	210, 318
BspLI	GGNNCC	3 cut(s)	210, 276, 318
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	28, 232
BssECI	CCNNGG	4 cut(s)	17, 246, 266, 400
BssMI	GATC	3 cut(s)	108, 289, 375
Bst2UI	CCWGG	6 cut(s)	18, 101, 247, 267, 279, 402
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	366
BstAPI	GCANNNNNTGC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	296
BstKTI	GATC	3 cut(s)	111, 292, 378
BstMBI	GATC	3 cut(s)	108, 289, 375
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 62, 71, 74
BstNI	CCWGG	6 cut(s)	18, 101, 247, 267, 279, 402
BstSCI	CCNGG	6 cut(s)	16, 99, 245, 265, 277, 400
BstSFI	CTRYAG	1 cut(s)	63
BstSLI	GKGCMC	2 cut(s)	212, 320
BstV1I	GCAGC	6 cut(s)	17, 49, 64, 65, 77, 220
BstX2I	RGATCY	2 cut(s)	108, 375
BstYI	RGATCY	2 cut(s)	108, 375
BsuRI	GGCC	2 cut(s)	210, 318
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	296
Cfr13I	GGNCC	4 cut(s)	208, 209, 316, 317
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	8 cut(s)	56, 62, 77, 210, 233, 298, 318, 344
CviKI_1	RGCY	8 cut(s)	56, 62, 77, 210, 233, 298, 318, 344
DpnI	GATC	3 cut(s)	110, 291, 377
DpnII	GATC	3 cut(s)	108, 289, 375
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco24I	GRGCYC	2 cut(s)	212, 320
Eco32I	GATATC	1 cut(s)	425
Eco88I	CYCGRG	1 cut(s)	57
EcoO109I	RGGNCCY	3 cut(s)	209, 316, 317
EcoRII	CCWGG	6 cut(s)	16, 99, 245, 265, 277, 400
EcoRV	GATATC	1 cut(s)	425
EcoT38I	GRGCYC	2 cut(s)	212, 320
FaeI	CATG	1 cut(s)	85
FaiI	YATR	6 cut(s)	83, 96, 138, 215, 434, 436
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	1 cut(s)	81
Fnu4HI	GCNGC	7 cut(s)	6, 54, 63, 66, 75, 78, 234
FriOI	GRGCYC	2 cut(s)	212, 320
Fsp4HI	GCNGC	7 cut(s)	6, 54, 63, 66, 75, 78, 234
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	7 cut(s)	6, 54, 63, 66, 75, 78, 234
GsuI	CTGGAG	2 cut(s)	249, 423
HaeIII	GGCC	2 cut(s)	210, 318
Hin1II	CATG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	65, 122
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 62, 71, 74
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	108, 289, 375
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	6 cut(s)	17, 49, 64, 65, 77, 220
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	3 cut(s)	110, 291, 377
MboI	GATC	3 cut(s)	108, 289, 375
MboII	GAAGA	1 cut(s)	383
MflI	RGATCY	2 cut(s)	108, 375
MhlI	GDGCHC	2 cut(s)	212, 320
MluCI	AATT	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	3 cut(s)	42, 307, 398
MseI	TTAA	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	117
MspR9I	CCNGG	6 cut(s)	18, 101, 247, 267, 279, 402
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	6 cut(s)	18, 101, 247, 267, 279, 402
MwoI	GCNNNNNNNGC	4 cut(s)	59, 62, 71, 74
NdeII	GATC	3 cut(s)	108, 289, 375
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	3 cut(s)	210, 276, 318
NmuCI	GTSAC	1 cut(s)	187
PctI	GAATGC	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	277
PkrI	GCNGC	7 cut(s)	7, 55, 64, 67, 76, 79, 235
Psp1406I	AACGTT	1 cut(s)	203
Psp6I	CCWGG	6 cut(s)	16, 99, 245, 265, 277, 400
PspGI	CCWGG	6 cut(s)	16, 99, 245, 265, 277, 400
PspN4I	GGNNCC	3 cut(s)	210, 276, 318
PspOMI	GGGCCC	2 cut(s)	208, 316
PspPI	GGNCC	4 cut(s)	208, 209, 316, 317
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	108, 375
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	7 cut(s)	6, 54, 63, 66, 75, 78, 234
Sau3AI	GATC	3 cut(s)	108, 289, 375
Sau96I	GGNCC	4 cut(s)	208, 209, 316, 317
ScrFI	CCNGG	6 cut(s)	18, 101, 247, 267, 279, 402
SduI	GDGCHC	2 cut(s)	212, 320
SetI	ASST	8 cut(s)	58, 102, 206, 235, 276, 300, 346, 364
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	353
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	6 cut(s)	16, 99, 245, 265, 277, 400
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	1 cut(s)	206
TasI	AATT	1 cut(s)	353
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	6 cut(s)	5, 53, 62, 65, 77, 233
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	98, 153
TspRI	CASTG	1 cut(s)	49
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.