FvH4_5g34113

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018852
Physical Location & Seq
Forward (+)
24797786 .. 24798394
609 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34113.t1

Sequence Viewer

Length: 399 bp
ATGGGGAAGAAGAGAAAACCCATAACCACGAGCCTCGACGAGGTCGATAGAAGCATGTACGCCTCGTTCTGCAGCGCTGCGAATTCCCTCTCTCAGCTATACACACAAGGCATGAACAACCAGAAGTTCTCCTTCCAAGCCGGCGAACGCCATGCCCTAGATAAAATTTATCAGTGGATCCGCAGTACACAACAAGGAGGATCGAGAGTTACCACAGACGATGTACTCAGTTACCTTCAGAATGAGCTGGGCTACTGTGGAGAGGAGGCACCGCAGTCAATGCTCCCTATAGTATTGCCAGTTCATTATCAGCATACACATCCCAATGTGCAATTCATAAACTCGGCTTTCCCTCCGAGTTTCAACGACTCATCAATGGAATTGCATACAGGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

133

Amino Acids

14.88

Weight (kDa)

5.91

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018852)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g34113
rosa_chinensis RchiOBHm_Chr7g0233661
rosa_laevigata RLG00000001243
rosa_multiflora Rmu_sc0005305.1_g000011
rosa_samantha Rh7AG438400 Rh7BG411100 Rh7CG457900 Rh7DG427400
rosa_wichuraiana Rw7G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AciI CCGC 2 cut(s) 181, 272
AclWI GGATC 3 cut(s) 172, 185, 208
AcsI RAATTY 2 cut(s) 82, 165
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 3 cut(s) 59, 187, 225
AfeI AGCGCT 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 1 cut(s) 364
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 2 cut(s) 97, 247
AluI AGCT 2 cut(s) 97, 247
AlwI GGATC 3 cut(s) 172, 185, 208
Aor51HI AGCGCT 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 72, 77
ApoI RAATTY 2 cut(s) 82, 165
AspLEI GCGC 1 cut(s) 77
BamHI GGATCC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 268
BauI CACGAG 1 cut(s) 28
BbvI GCAGC 2 cut(s) 64, 84
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 2 cut(s) 70, 288
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 2 cut(s) 73, 78
BlsI GCNGC 2 cut(s) 74, 79
BmiI GGNNCC 2 cut(s) 179, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 107, 241
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 64, 84
BseYI CCCAGC 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 40
Bsp143I GATC 2 cut(s) 177, 200
BspACI CCGC 2 cut(s) 181, 272
BspCNI CTCAG 2 cut(s) 106, 240
BspLI GGNNCC 2 cut(s) 179, 270
BspMAI CTGCAG 1 cut(s) 74
BspPI GGATC 3 cut(s) 172, 185, 208
BspT107I GGYRCC 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 140
BssMI GATC 2 cut(s) 177, 200
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 93, 227
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 319
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 2 cut(s) 180, 203
BstMBI GATC 2 cut(s) 177, 200
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 58
BstSFI CTRYAG 2 cut(s) 70, 288
BstV1I GCAGC 2 cut(s) 64, 84
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 140
Csp6I GTAC 3 cut(s) 58, 186, 224
CviAII CATG 3 cut(s) 55, 112, 152
CviJI RGCY 6 cut(s) 33, 97, 140, 247, 252, 347
CviKI_1 RGCY 6 cut(s) 33, 97, 140, 247, 252, 347
CviQI GTAC 3 cut(s) 58, 186, 224
DdeI CTNAG 2 cut(s) 93, 227
DpnI GATC 2 cut(s) 179, 202
DpnII GATC 2 cut(s) 177, 200
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco47III AGCGCT 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 82
FaeI CATG 3 cut(s) 58, 115, 155
FaiI YATR 9 cut(s) 23, 56, 100, 113, 153, 290, 315, 338, 387
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 3 cut(s) 54, 111, 151
Fnu4HI GCNGC 2 cut(s) 73, 78
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 73, 78
FspBI CTAG 1 cut(s) 158
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 73, 78
GsaI CCCAGC 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 78
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 77
Hin1II CATG 3 cut(s) 58, 115, 155
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 1 cut(s) 368
HpaII CCGG 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 240, 357
Hpy188III TCNNGA 1 cut(s) 204
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 142, 245
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 3 cut(s) 72, 331, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 2 cut(s) 93, 227
Hsp92II CATG 3 cut(s) 58, 115, 155
HspAI GCGC 1 cut(s) 75
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 177, 200
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 5 cut(s) 134, 154, 233, 312, 375
Lsp1109I GCAGC 2 cut(s) 64, 84
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 208, 230
MalI GATC 2 cut(s) 179, 202
MboI GATC 2 cut(s) 177, 200
MboII GAAGA 2 cut(s) 19, 22
MflI RGATCY 1 cut(s) 177
MluCI AATT 4 cut(s) 82, 165, 332, 380
MlyI GAGTC 1 cut(s) 362
MnlI CCTC 8 cut(s) 34, 44, 73, 98, 191, 256, 259, 363
MroNI GCCGGC 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 280
NaeI GCCGGC 1 cut(s) 142
NdeII GATC 2 cut(s) 177, 200
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 3 cut(s) 58, 115, 155
NlaIV GGNNCC 2 cut(s) 179, 270
NmeAIII GCCGAG 1 cut(s) 323
NspI RCATGY 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdiI GCCGGC 1 cut(s) 142
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 74, 79
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PspFI CCCAGC 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 179, 270
PsrI GAACNNNNNNTAC 4 cut(s) 50, 82, 285, 317
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 177
PsyI GACNNNGTC 1 cut(s) 41
RsaI GTAC 3 cut(s) 59, 187, 225
RsaNI GTAC 3 cut(s) 58, 186, 224
RseI CAYNNNNRTG 1 cut(s) 324
SatI GCNGC 2 cut(s) 73, 78
Sau3AI GATC 2 cut(s) 177, 200
SchI GAGTC 1 cut(s) 362
SetI ASST 4 cut(s) 45, 99, 237, 249
SfcI CTRYAG 2 cut(s) 70, 288
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 4 cut(s) 82, 165, 332, 380
SsiI CCGC 2 cut(s) 181, 272
SspMI CTAG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 3 cut(s) 36, 45, 203
TasI AATT 4 cut(s) 82, 165, 332, 380
TatI WGTACW 2 cut(s) 185, 223
TscAI CASTG 1 cut(s) 179
TseI GCWGC 2 cut(s) 72, 77
TspDTI ATGAA 3 cut(s) 128, 293, 325
TspRI CASTG 1 cut(s) 179
Tth111I GACNNNGTC 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 2 cut(s) 82, 165
XceI RCATGY 1 cut(s) 58
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.