Rmu_sc0005305.1_g000011

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005305.1
OG0018852
Physical Location & Seq
Reverse (-)
61713 .. 62066
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005305.1_g000011.1.cds

Sequence Viewer

Length: 354 bp
atgtacgcctccttctgcagcgctgctaattccctctctcagttatacacacaaggcatgaacaaccagaagctctccttccaagccggcgaacgccatgccctagataaaatttatcggtggatccacagtatacaacaaggaggatcgagagttacgacggacaatgtactcagttaccttcagaatgagctgggctattgtggagaggaggcaacgcaggcaatgtgctctagcgtactgccagttcaatatcagcatacacatcccaatattcaatttacaaactccgctttcccttcgagtttcaacgactcatcaatggatatacatgatagtccttctcaatactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

117

Amino Acids

13.12

Weight (kDa)

5.57

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018852)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g34113
rosa_chinensis RchiOBHm_Chr7g0233661
rosa_laevigata RLG00000001243
rosa_multiflora Rmu_sc0005305.1_g000011
rosa_samantha Rh7AG438400 Rh7BG411100 Rh7CG457900 Rh7DG427400
rosa_wichuraiana Rw7G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 133
AciI CCGC 1 cut(s) 291
AclWI GGATC 3 cut(s) 118, 131, 154
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 167
AfaI GTAC 3 cut(s) 5, 171, 240
AfeI AGCGCT 1 cut(s) 22
AgsI TTSAA 3 cut(s) 251, 278, 310
AluBI AGCT 2 cut(s) 73, 193
AluI AGCT 2 cut(s) 73, 193
Alw21I GWGCWC 1 cut(s) 233
AlwI GGATC 3 cut(s) 118, 131, 154
Aor51HI AGCGCT 1 cut(s) 22
ApeKI GCWGC 2 cut(s) 18, 23
ApoI RAATTY 1 cut(s) 111
AspLEI GCGC 1 cut(s) 23
BamHI GGATCC 1 cut(s) 123
BarI GAAGNNNNNNTAC 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 10, 30
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BfaI CTAG 2 cut(s) 104, 234
BfmI CTRYAG 1 cut(s) 16
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 2 cut(s) 19, 24
BlsI GCNGC 2 cut(s) 20, 25
BmiI GGNNCC 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 231
BseGI GGATG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 2 cut(s) 53, 187
BseNI ACTGG 1 cut(s) 245
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 2 cut(s) 10, 30
BseYI CCCAGC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 233
BsiSI CCGG 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 123, 146
BspACI CCGC 1 cut(s) 291
BspCNI CTCAG 2 cut(s) 52, 186
BspLI GGNNCC 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 20
BspPI GGATC 3 cut(s) 118, 131, 154
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 1 cut(s) 245
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 2 cut(s) 123, 146
BssNAI GTATAC 1 cut(s) 134
Bst1107I GTATAC 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 88, 222
BstDEI CTNAG 2 cut(s) 39, 173
BstF5I GGATG 1 cut(s) 265
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 2 cut(s) 126, 149
BstMBI GATC 2 cut(s) 123, 146
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 10, 30
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BstZ17I GTATAC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 88, 222
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 1 cut(s) 86
Csp6I GTAC 3 cut(s) 4, 170, 239
CviAII CATG 3 cut(s) 58, 98, 332
CviJI RGCY 4 cut(s) 73, 86, 193, 198
CviKI_1 RGCY 4 cut(s) 73, 86, 193, 198
CviQI GTAC 3 cut(s) 4, 170, 239
DdeI CTNAG 2 cut(s) 39, 173
DpnI GATC 2 cut(s) 125, 148
DpnII GATC 2 cut(s) 123, 146
Eco47III AGCGCT 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 167
FaeI CATG 3 cut(s) 61, 101, 335
FaiI YATR 7 cut(s) 46, 59, 99, 134, 261, 329, 333
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 3 cut(s) 57, 97, 331
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 19, 24
FokI GGATG 1 cut(s) 252
Fsp4HI GCNGC 2 cut(s) 19, 24
FspBI CTAG 2 cut(s) 104, 234
GlaI GCGC 1 cut(s) 22
GluI GCNGC 2 cut(s) 19, 24
GsaI CCCAGC 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 24
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 61, 101, 335
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 150
Hpy8I GTNNAC 1 cut(s) 134
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 5 cut(s) 22, 88, 191, 309, 351
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 2 cut(s) 39, 173
Hsp92II CATG 3 cut(s) 61, 101, 335
HspAI GCGC 1 cut(s) 21
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 123, 146
LpnPI CCDG 5 cut(s) 80, 100, 179, 206, 258
Lsp1109I GCAGC 2 cut(s) 10, 30
MaeI CTAG 2 cut(s) 104, 234
MaeIII GTNAC 2 cut(s) 154, 176
MalI GATC 2 cut(s) 125, 148
MboI GATC 2 cut(s) 123, 146
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 3 cut(s) 28, 111, 278
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 5 cut(s) 19, 44, 137, 202, 205
MroNI GCCGGC 1 cut(s) 86
MspI CCGG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 221
NaeI GCCGGC 1 cut(s) 88
NdeII GATC 2 cut(s) 123, 146
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 3 cut(s) 61, 101, 335
NlaIV GGNNCC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PdiI GCCGGC 1 cut(s) 88
PkrI GCNGC 2 cut(s) 20, 25
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PspFI CCCAGC 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 125
PsrI GAACNNNNNNTAC 2 cut(s) 231, 263
PstI CTGCAG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 123
RsaI GTAC 3 cut(s) 5, 171, 240
RsaNI GTAC 3 cut(s) 4, 170, 239
SatI GCNGC 2 cut(s) 19, 24
Sau3AI GATC 2 cut(s) 123, 146
SchI GAGTC 1 cut(s) 308
SduI GDGCHC 1 cut(s) 233
SetI ASST 3 cut(s) 75, 183, 195
SfcI CTRYAG 1 cut(s) 16
Sse9I AATT 3 cut(s) 28, 111, 278
SsiI CCGC 1 cut(s) 291
SspI AATATT 1 cut(s) 274
SspMI CTAG 2 cut(s) 104, 234
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 2 cut(s) 149, 302
TasI AATT 3 cut(s) 28, 111, 278
TatI WGTACW 1 cut(s) 169
TseI GCWGC 2 cut(s) 18, 23
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 176
XapI RAATTY 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 2 cut(s) 104, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.