Rh7CG457900

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018852
Physical Location & Seq
Forward (+)
60332612 .. 60333090
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG457900.1

Sequence Viewer

Length: 408 bp
ATGGGGAAGAAGAGAAAATCCATAGCCACGAGCCTTGACGAGGTGGATCGAAGCATGCACGCCTCCTTCTGCAGCGCTGCTAATTCCCTCTCTCAGTTATACACACAAGGCATGAACAACCAGAAGCTCTCCTTCCAAGCCGGCGAACGCCATGCCTTAGATAAAATTTATCAGTGGATCCGCAGTACACAACAAGGAGGATCGAGAGTTACGACGGACAATGTACTCTGTTACCTTCAGAATGAGCTGGGATATTGTGGAGACGAGGCAACGCAGGCGATATGCCCTAGAGTACTGCCAGTTCAATATCAGCATACACATACCAATGTGCAATTCACAAATTCTTCTTTCCCTCCGAGTTTCAACGACACATCAATGGACATACATGATAGTCCTTCTCAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

135

Amino Acids

15.17

Weight (kDa)

6.49

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018852)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g34113
rosa_chinensis RchiOBHm_Chr7g0233661
rosa_laevigata RLG00000001243
rosa_multiflora Rmu_sc0005305.1_g000011
rosa_samantha Rh7AG438400 Rh7BG411100 Rh7CG457900 Rh7DG427400
rosa_wichuraiana Rw7G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 181
AclWI GGATC 4 cut(s) 54, 172, 185, 208
AcsI RAATTY 2 cut(s) 165, 340
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 3 cut(s) 187, 225, 294
AfeI AGCGCT 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 2 cut(s) 305, 364
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 2 cut(s) 127, 247
AluI AGCT 2 cut(s) 127, 247
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 4 cut(s) 54, 172, 185, 208
Aor51HI AGCGCT 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 72, 77
ApoI RAATTY 2 cut(s) 165, 340
AspLEI GCGC 1 cut(s) 77
BamHI GGATCC 1 cut(s) 177
BauI CACGAG 1 cut(s) 28
BbvI GCAGC 2 cut(s) 64, 84
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 70
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 2 cut(s) 73, 78
BlsI GCNGC 2 cut(s) 74, 79
BmcAI AGTACT 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 64, 84
BseYI CCCAGC 1 cut(s) 247
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 255
BsmBI CGTCTC 1 cut(s) 255
Bsp143I GATC 3 cut(s) 46, 177, 200
BspACI CCGC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 74
BspPI GGATC 4 cut(s) 54, 172, 185, 208
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 140
BssMI GATC 3 cut(s) 46, 177, 200
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 5
BstC8I GCNNGC 4 cut(s) 56, 60, 142, 276
BstDEI CTNAG 2 cut(s) 93, 157
BstENI CCTNNNNNAGG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 3 cut(s) 49, 180, 203
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 3 cut(s) 46, 177, 200
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 64, 84
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 4 cut(s) 56, 60, 142, 276
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 140
Csp6I GTAC 3 cut(s) 186, 224, 293
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 4 cut(s) 55, 112, 152, 386
CviJI RGCY 5 cut(s) 26, 33, 127, 140, 247
CviKI_1 RGCY 5 cut(s) 26, 33, 127, 140, 247
CviQI GTAC 3 cut(s) 186, 224, 293
DdeI CTNAG 2 cut(s) 93, 157
DpnI GATC 3 cut(s) 48, 179, 202
DpnII GATC 3 cut(s) 46, 177, 200
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco47III AGCGCT 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 4 cut(s) 58, 115, 155, 389
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 4 cut(s) 54, 111, 151, 385
Fnu4HI GCNGC 2 cut(s) 73, 78
Fsp4HI GCNGC 2 cut(s) 73, 78
FspBI CTAG 1 cut(s) 288
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 73, 78
GsaI CCCAGC 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 78
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 77
Hin1II CATG 4 cut(s) 58, 115, 155, 389
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HpaII CCGG 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 2 cut(s) 240, 357
Hpy188III TCNNGA 1 cut(s) 204
Hpy8I GTNNAC 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 4 cut(s) 76, 142, 245, 405
HpyCH4V TGCA 3 cut(s) 58, 72, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 93, 157
Hsp92II CATG 4 cut(s) 58, 115, 155, 389
HspAI GCGC 1 cut(s) 75
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 3 cut(s) 46, 177, 200
LpnPI CCDG 5 cut(s) 134, 154, 233, 260, 312
Lsp1109I GCAGC 2 cut(s) 64, 84
MaeI CTAG 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 208, 230
MalI GATC 3 cut(s) 48, 179, 202
MboI GATC 3 cut(s) 46, 177, 200
MboII GAAGA 3 cut(s) 19, 22, 336
MflI RGATCY 1 cut(s) 177
MluCI AATT 4 cut(s) 82, 165, 332, 340
MnlI CCTC 6 cut(s) 34, 73, 98, 191, 259, 363
MroNI GCCGGC 1 cut(s) 140
MslI CAYNNNNRTG 2 cut(s) 324, 374
MspI CCGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 275
NaeI GCCGGC 1 cut(s) 142
NdeII GATC 3 cut(s) 46, 177, 200
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 4 cut(s) 58, 115, 155, 389
NlaIV GGNNCC 1 cut(s) 179
NspI RCATGY 1 cut(s) 58
PaeI GCATGC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 74, 79
PspFI CCCAGC 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 179
PsrI GAACNNNNNNTAC 2 cut(s) 285, 317
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 177
RsaI GTAC 3 cut(s) 187, 225, 294
RsaNI GTAC 3 cut(s) 186, 224, 293
RseI CAYNNNNRTG 2 cut(s) 324, 374
SatI GCNGC 2 cut(s) 73, 78
Sau3AI GATC 3 cut(s) 46, 177, 200
ScaI AGTACT 1 cut(s) 294
SetI ASST 4 cut(s) 45, 129, 237, 249
SfcI CTRYAG 1 cut(s) 70
SmiMI CAYNNNNRTG 2 cut(s) 324, 374
SphI GCATGC 1 cut(s) 58
Sse9I AATT 4 cut(s) 82, 165, 332, 340
SsiI CCGC 1 cut(s) 181
SspMI CTAG 1 cut(s) 288
TaqI TCGA 2 cut(s) 49, 203
TasI AATT 4 cut(s) 82, 165, 332, 340
TatI WGTACW 3 cut(s) 185, 223, 292
TscAI CASTG 1 cut(s) 179
TseI GCWGC 2 cut(s) 72, 77
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 1 cut(s) 179
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 2 cut(s) 165, 340
XceI RCATGY 1 cut(s) 58
XspI CTAG 1 cut(s) 288
ZrmI AGTACT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.