RLG00000001243

conserved protein UCP009193

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018852
Physical Location & Seq
Reverse (-)
12775809 .. 12776216
408 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001243

Sequence Viewer

Length: 408 bp
ATGGGGAAGAAGAGAAAATCCATAGCCACGAGCCTTGACGAGGTCGATCGAACAATGTACGCCTCCTTCTGCAGCGCTGCTAATTCCCTCTCTCAGTTATACACACAAGGCATGAACAACCAGAAGCTCTCCTTCCAAGCCGGCGAACGCCATGCCCTAGATAAAATTTATCAGTGGATCCACAGTACACAACAAGGAGGATCGAGAGTTACGACCGACAATGTACTCAGTTACCTTCAGAATGAGCTGGGCTATTGTGGAGAGGAGGCAACGCAGGCAATGTGCCCAAGAGTACTGCCAGTTCAATATCAGCATACACATCCCAATGTTCAAATTACAAACTTCGCTTTTCCTTCGAGTTTGAACGACTCATCAATGGATATACACGATAGTCCTTCTCAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4588

Protein Analysis

136

Amino Acids

15.16

Weight (kDa)

6.16

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018852)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g34113
rosa_chinensis RchiOBHm_Chr7g0233661
rosa_laevigata RLG00000001243
rosa_multiflora Rmu_sc0005305.1_g000011
rosa_samantha Rh7AG438400 Rh7BG411100 Rh7CG457900 Rh7DG427400
rosa_wichuraiana Rw7G036150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 172, 185, 208
AcsI RAATTY 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 4 cut(s) 59, 187, 225, 294
AfeI AGCGCT 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 3 cut(s) 305, 332, 364
AluBI AGCT 2 cut(s) 127, 247
AluI AGCT 2 cut(s) 127, 247
AlwI GGATC 3 cut(s) 172, 185, 208
Aor51HI AGCGCT 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 72, 77
ApoI RAATTY 1 cut(s) 165
AspLEI GCGC 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 287
BamHI GGATCC 1 cut(s) 177
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
BauI CACGAG 1 cut(s) 28
BbvI GCAGC 2 cut(s) 64, 84
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 70
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 2 cut(s) 73, 78
BlsI GCNGC 2 cut(s) 74, 79
BmcAI AGTACT 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 285
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 107, 241
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 2 cut(s) 64, 84
BseYI CCCAGC 1 cut(s) 247
Bsh1285I CGRYCG 2 cut(s) 49, 216
BsiEI CGRYCG 2 cut(s) 49, 216
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 3 cut(s) 46, 177, 200
BspCNI CTCAG 2 cut(s) 106, 240
BspLI GGNNCC 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 74
BspPI GGATC 3 cut(s) 172, 185, 208
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 140
BssMI GATC 3 cut(s) 46, 177, 200
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 142, 276
BstDEI CTNAG 2 cut(s) 93, 227
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 319
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 3 cut(s) 49, 180, 203
BstMBI GATC 3 cut(s) 46, 177, 200
BstMCI CGRYCG 2 cut(s) 49, 216
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 2 cut(s) 64, 84
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 142, 276
CfoI GCGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 140
Csp6I GTAC 4 cut(s) 58, 186, 224, 293
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 2 cut(s) 112, 152
CviJI RGCY 6 cut(s) 26, 33, 127, 140, 247, 252
CviKI_1 RGCY 6 cut(s) 26, 33, 127, 140, 247, 252
CviQI GTAC 4 cut(s) 58, 186, 224, 293
DdeI CTNAG 2 cut(s) 93, 227
DpnI GATC 3 cut(s) 48, 179, 202
DpnII GATC 3 cut(s) 46, 177, 200
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco47III AGCGCT 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 221
EcoNI CCTNNNNNAGG 1 cut(s) 38
FaeI CATG 2 cut(s) 115, 155
FaiI YATR 6 cut(s) 23, 100, 113, 153, 315, 383
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 2 cut(s) 111, 151
Fnu4HI GCNGC 2 cut(s) 73, 78
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 73, 78
FspBI CTAG 1 cut(s) 158
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 73, 78
GsaI CCCAGC 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 78
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 77
Hin1II CATG 2 cut(s) 115, 155
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 1 cut(s) 368
HpaII CCGG 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 204
Hpy8I GTNNAC 1 cut(s) 188
HpyAV CCTTC 5 cut(s) 76, 142, 245, 363, 405
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 93, 227
Hsp92II CATG 2 cut(s) 115, 155
HspAI GCGC 1 cut(s) 75
KroI GCCGGC 1 cut(s) 140
KroNI GCCGGC 1 cut(s) 142
Kzo9I GATC 3 cut(s) 46, 177, 200
LpnPI CCDG 5 cut(s) 134, 154, 233, 260, 312
Lsp1109I GCAGC 2 cut(s) 64, 84
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 208, 230
MalI GATC 3 cut(s) 48, 179, 202
MboI GATC 3 cut(s) 46, 177, 200
MboII GAAGA 2 cut(s) 19, 22
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 3 cut(s) 82, 165, 333
MlyI GAGTC 1 cut(s) 362
MnlI CCTC 6 cut(s) 34, 73, 98, 191, 256, 259
MroNI GCCGGC 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 1 cut(s) 141
MwoI GCNNNNNNNGC 1 cut(s) 275
NaeI GCCGGC 1 cut(s) 142
NdeII GATC 3 cut(s) 46, 177, 200
NgoMIV GCCGGC 1 cut(s) 140
NlaIII CATG 2 cut(s) 115, 155
NlaIV GGNNCC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 142
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 74, 79
Ple19I CGATCG 1 cut(s) 49
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PspFI CCCAGC 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 179
PsrI GAACNNNNNNTAC 2 cut(s) 285, 317
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 177
PsyI GACNNNGTC 1 cut(s) 41
PvuI CGATCG 1 cut(s) 49
RsaI GTAC 4 cut(s) 59, 187, 225, 294
RsaNI GTAC 4 cut(s) 58, 186, 224, 293
RseI CAYNNNNRTG 1 cut(s) 324
SatI GCNGC 2 cut(s) 73, 78
Sau3AI GATC 3 cut(s) 46, 177, 200
ScaI AGTACT 1 cut(s) 294
SchI GAGTC 1 cut(s) 362
SduI GDGCHC 1 cut(s) 287
SetI ASST 4 cut(s) 45, 129, 237, 249
SfcI CTRYAG 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 3 cut(s) 82, 165, 333
SspMI CTAG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 4 cut(s) 45, 49, 203, 356
TaqII GACCGA 1 cut(s) 230
TasI AATT 3 cut(s) 82, 165, 333
TatI WGTACW 3 cut(s) 185, 223, 292
TscAI CASTG 1 cut(s) 179
TseI GCWGC 2 cut(s) 72, 77
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 1 cut(s) 179
Tth111I GACNNNGTC 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 1 cut(s) 165
XspI CTAG 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.