Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0021089

Physical Location & Seq

Genomic Coordinates Reverse (-)

25847505 .. 25851573

Gene Structure 4069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCACGATGGCCATGGACCTACAAGATTAGTATGAGAGGTGAAGATATGAGCCTCCATATGGTTCGTGGAAGTTCTTCTGTTAAATGGGTACTATTGGCTCCAAATCGGTCCCATACATGGTACAAGGCTATTTTAAAAGCACCACCAGGAAATGCACCATTAGCTTTAGAGATATGGGTAGCATGGGAAAGGGTCAAATGTGGTCAGAGCTTCGGAAGCCATTGCCCGGCATATATAGCACAAGGGAGTTGTGGTGCTTGTTATTATGCTTATACTGAAAACAAATGCCGAACAAATTGTGGCCAGCCCTCTCAGAGATGGTACCATGTTCCCTGCTCGTGGTTGAAGCAGCCAAGTGGGAATTCATTGGTTGTGTTTGAAGAATGGGGTGGTGATCCTACTAAGATTGCTTTGGTAGCAAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

144

Amino Acids

16.18

Weight (kDa)

9.28

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	40 - 121	3.5e-07	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0021089)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35280 FvH4_7g01440
rosa_chinensis	RchiOBHm_Chr3g0459411
rosa_laevigata	RLG00000025080
rosa_multiflora	Rmu_co8266025.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	324
AccB1I	GGYRCC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	392
AcoI	YGGCCR	2 cut(s)	11, 304
AcsI	RAATTY	1 cut(s)	364
AfaI	GTAC	3 cut(s)	93, 125, 326
AfiI	CCNNNNNNNGG	4 cut(s)	61, 120, 229, 342
AgsI	TTSAA	2 cut(s)	349, 383
AjnI	CCWGG	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	2 cut(s)	349, 381
AluBI	AGCT	2 cut(s)	167, 213
AluI	AGCT	2 cut(s)	167, 213
AlwI	GGATC	1 cut(s)	392
AoxI	GGCC	2 cut(s)	11, 304
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	1 cut(s)	364
Asp700I	GAANNNNTTC	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	18, 111
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	53, 407
AvaII	GGWCC	2 cut(s)	18, 111
BalI	TGGCCA	2 cut(s)	13, 306
BanI	GGYRCC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	3, 315
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	230
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
Bme1390I	CCNGG	2 cut(s)	150, 230
Bme18I	GGWCC	2 cut(s)	18, 111
BmgT120I	GGNCC	2 cut(s)	18, 111
BmiI	GGNNCC	3 cut(s)	102, 113, 326
BmrFI	CCNGG	2 cut(s)	150, 230
BpuMI	CCSGG	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 120, 229, 342
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	4 cut(s)	61, 120, 229, 342
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	364
BshFI	GGCC	2 cut(s)	13, 306
BshNI	GGYRCC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	4 cut(s)	61, 120, 229, 342
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	13, 306
Bsp143I	GATC	1 cut(s)	397
Bsp19I	CCATGG	1 cut(s)	14
BspANI	GGCC	2 cut(s)	13, 306
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	3 cut(s)	102, 113, 326
BspPI	GGATC	1 cut(s)	392
BspT107I	GGYRCC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	1 cut(s)	397
BssSI	CACGAG	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	2 cut(s)	315, 405
BstDSI	CCRYGG	1 cut(s)	14
BstKTI	GATC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 219, 239, 419
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	148, 228
BstV1I	GCAGC	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	13, 306
BtgI	CCRYGG	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	18, 111
Csp6I	GTAC	3 cut(s)	92, 124, 325
CviAII	CATG	4 cut(s)	15, 120, 186, 329
CviQI	GTAC	3 cut(s)	92, 124, 325
DdeI	CTNAG	2 cut(s)	315, 405
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
DraI	TTTAAA	1 cut(s)	138
EaeI	YGGCCR	2 cut(s)	11, 304
Eco130I	CCWWGG	1 cut(s)	14
Eco47I	GGWCC	2 cut(s)	18, 111
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	4 cut(s)	18, 123, 189, 332
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	4 cut(s)	14, 119, 185, 328
FauNDI	CATATG	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	353
GluI	GCNGC	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	13, 306
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	4 cut(s)	18, 123, 189, 332
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	53, 407
Hpy188I	TCNGA	3 cut(s)	210, 218, 318
Hpy188III	TCNNGA	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 219, 239, 419
HpyF3I	CTNAG	2 cut(s)	315, 405
Hsp92II	CATG	4 cut(s)	18, 123, 189, 332
KpnI	GGTACC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	5 cut(s)	135, 162, 243, 320, 349
Lsp1109I	GCAGC	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	3 cut(s)	56, 69, 395
MlsI	TGGCCA	2 cut(s)	13, 306
MluCI	AATT	3 cut(s)	298, 364, 427
MluNI	TGGCCA	2 cut(s)	13, 306
MnlI	CCTC	3 cut(s)	32, 65, 322
Mox20I	TGGCCA	2 cut(s)	13, 306
MroXI	GAANNNNTTC	1 cut(s)	76
MscI	TGGCCA	2 cut(s)	13, 306
MseI	TTAA	2 cut(s)	84, 137
Msp20I	TGGCCA	2 cut(s)	13, 306
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	150, 230
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	4 cut(s)	164, 219, 239, 419
NciI	CCSGG	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	14
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	4 cut(s)	18, 123, 189, 332
NlaIV	GGNNCC	3 cut(s)	102, 113, 326
NmuCI	GTSAC	1 cut(s)	3
PdmI	GAANNNNTTC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	102, 113, 326
PspPI	GGNCC	2 cut(s)	18, 111
RsaI	GTAC	3 cut(s)	93, 125, 326
RsaNI	GTAC	3 cut(s)	92, 124, 325
SaqAI	TTAA	2 cut(s)	84, 137
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	1 cut(s)	397
Sau96I	GGNCC	2 cut(s)	18, 111
ScrFI	CCNGG	2 cut(s)	150, 230
SetI	ASST	4 cut(s)	23, 43, 169, 215
SinI	GGWCC	2 cut(s)	18, 111
Sse9I	AATT	3 cut(s)	298, 364, 427
StyD4I	CCNGG	2 cut(s)	148, 228
StyI	CCWWGG	1 cut(s)	14
TaqII	GACCGA	1 cut(s)	99
TasI	AATT	3 cut(s)	298, 364, 427
Tru1I	TTAA	2 cut(s)	84, 137
Tru9I	TTAA	2 cut(s)	84, 137
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	357
VpaK11BI	GGWCC	2 cut(s)	18, 111
XapI	RAATTY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.