Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8266025.1

Orthogroup ID

OG0021089

Physical Location & Seq

Genomic Coordinates Reverse (-)

152 .. 800

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8266025.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgaaaggtgaagcattaagcctccatactgttaagggaagttcttccgttgaatgggtagaaggaccactattggctcagaaacaaccccttacatggtacaagtctatatttcatgcaccaccgggaaatgctccattagctttagatatggttagcatgggcaagggtcaagtatggatcaatggtcagagcatcggacgccactggcctggatacatagcacatggtagctgtggcaattgttcttatgctggaacttacaccgaaaacaaatgccgaacaaattgtggtcagccgtcacagagatggtaccatgttccacaatcgtggttgaaccagagtgaaaatttgttggtggtgtttgaagaatggggtggtgacccgactaagatttccctggtggcacgaagctatgaaaacttagggcagaccctctataacatagagggcggctccaaccatttgagattgcaattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

160

Amino Acids

17.74

Weight (kDa)

7.72

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021089)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g35280 FvH4_7g01440
rosa_chinensis	RchiOBHm_Chr3g0459411
rosa_laevigata	RLG00000025080
rosa_multiflora	Rmu_co8266025.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AciI	CCGC	1 cut(s)	453
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	349
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	2 cut(s)	101, 314
AfiI	CCNNNNNNNGG	2 cut(s)	54, 96
AgsI	TTSAA	3 cut(s)	53, 337, 368
AjnI	CCWGG	2 cut(s)	211, 399
AleI	CACNNNNGTG	1 cut(s)	328
AluBI	AGCT	3 cut(s)	143, 234, 414
AluI	AGCT	3 cut(s)	143, 234, 414
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	349
Asp700I	GAANNNNTTC	1 cut(s)	43
Asp718I	GGTACC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	20, 392
AvaII	GGWCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	312
BccI	CCATC	1 cut(s)	303
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	2 cut(s)	213, 401
BciVI	GTATCC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	455
Bme1390I	CCNGG	3 cut(s)	126, 213, 401
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	314, 457
BmrFI	CCNGG	3 cut(s)	126, 213, 401
BmsI	GCATC	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
BpuMI	CCSGG	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 96
Bse1I	ACTGG	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	213, 401
BseDI	CCNNGG	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	54, 96
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	54, 96
BsnI	GGCC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	453
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	314, 457
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	202
Bst2UI	CCWGG	2 cut(s)	213, 401
Bst4CI	ACNGT	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	202
BstDEI	CTNAG	3 cut(s)	78, 390, 424
BstEII	GGTNACC	1 cut(s)	380
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 201
BstNI	CCWGG	2 cut(s)	213, 401
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	124, 211, 399
BstXI	CCANNNNNNTGG	2 cut(s)	212, 330
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	65
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	100, 313
CviAII	CATG	5 cut(s)	96, 116, 160, 227, 317
CviJI	RGCY	8 cut(s)	21, 77, 143, 211, 234, 298, 414, 456
CviKI_1	RGCY	8 cut(s)	21, 77, 143, 211, 234, 298, 414, 456
CviQI	GTAC	2 cut(s)	100, 313
DdeI	CTNAG	3 cut(s)	78, 390, 424
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	211, 399
FaeI	CATG	5 cut(s)	99, 119, 163, 230, 320
FatI	CATG	5 cut(s)	95, 115, 159, 226, 316
Fnu4HI	GCNGC	1 cut(s)	454
Fsp4HI	GCNGC	1 cut(s)	454
GluI	GCNGC	1 cut(s)	454
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	125
HgaI	GACGC	1 cut(s)	210
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	5 cut(s)	99, 119, 163, 230, 320
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	2 cut(s)	20, 392
Hpy188I	TCNGA	3 cut(s)	81, 192, 200
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	2 cut(s)	119, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 201
HpyF3I	CTNAG	3 cut(s)	78, 390, 424
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	5 cut(s)	99, 119, 163, 230, 320
KpnI	GGTACC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	139, 461
LpnPI	CCDG	8 cut(s)	138, 193, 198, 225, 240, 353, 386, 413
LweI	GCATC	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	300, 380
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	36, 380
MfeI	CAATTG	2 cut(s)	241, 476
MluCI	AATT	4 cut(s)	241, 286, 349, 476
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	3 cut(s)	32, 442, 446
MroXI	GAANNNNTTC	1 cut(s)	43
MseI	TTAA	2 cut(s)	17, 33
MslI	CAYNNNNRTG	2 cut(s)	307, 328
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	3 cut(s)	126, 213, 401
MunI	CAATTG	2 cut(s)	241, 476
MvaI	CCWGG	2 cut(s)	213, 401
MwoI	GCNNNNNNNGC	2 cut(s)	140, 201
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	5 cut(s)	99, 119, 163, 230, 320
NlaIV	GGNNCC	2 cut(s)	314, 457
NmuCI	GTSAC	2 cut(s)	300, 380
OliI	CACNNNNGTG	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	211, 399
PspEI	GGTNACC	1 cut(s)	380
PspGI	CCWGG	2 cut(s)	211, 399
PspN4I	GGNNCC	2 cut(s)	314, 457
PspPI	GGNCC	1 cut(s)	65
RsaI	GTAC	2 cut(s)	101, 314
RsaNI	GTAC	2 cut(s)	100, 313
RseI	CAYNNNNRTG	2 cut(s)	307, 328
SaqAI	TTAA	2 cut(s)	17, 33
SatI	GCNGC	1 cut(s)	454
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	65
ScrFI	CCNGG	3 cut(s)	126, 213, 401
SetI	ASST	4 cut(s)	10, 145, 236, 416
SfaNI	GCATC	1 cut(s)	204
SinI	GGWCC	1 cut(s)	65
SmiMI	CAYNNNNRTG	2 cut(s)	307, 328
Sse9I	AATT	4 cut(s)	241, 286, 349, 476
SsiI	CCGC	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	124, 211, 399
TaaI	ACNGT	1 cut(s)	31
TasI	AATT	4 cut(s)	241, 286, 349, 476
TauI	GCSGC	1 cut(s)	456
Tru1I	TTAA	2 cut(s)	17, 33
Tru9I	TTAA	2 cut(s)	17, 33
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	2 cut(s)	300, 380
Tsp45I	GTSAC	2 cut(s)	300, 380
TspDTI	ATGAA	3 cut(s)	17, 104, 432
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.